Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G082800 Theobroma cacao HOM05D006355 ORTHO05D008284 8.8e-182 640.2 330 100.0
Gohir.A07G013400 Gossypium hirsutum HOM05D006355 ORTHO05D008284 2.3e-137 492.7 330 76.7
Gohir.D07G013200 Gossypium hirsutum HOM05D006355 ORTHO05D008284 6.6e-137 491.1 330 76.7
Gorai.001G013900 Gossypium raimondii HOM05D006355 ORTHO05D008284 2.5e-136 489.2 330 76.4
Duzib168G2189 Durio zibethinus HOM05D006355 ORTHO05D008284 9.9e-133 477.2 329 75.7
COL.COLO4_18155 Corchorus olitorius HOM05D006355 ORTHO05D008284 7.1e-131 471.1 330 76.7
Cpa.g.sc28.115 Carica papaya HOM05D006355 ORTHO05D008284 1.7e-113 413.3 330 67.3
TAR413G0001 Trochodendron aralioides HOM05D006355 ORTHO05D008284 9.9e-109 397.5 329 65.7
CiPaw.03G211000 Carya illinoinensis HOM05D006355 ORTHO05D008284 4.2e-107 392.1 331 63.4
Atru.chr7.1648 Acer truncatum HOM05D006355 ORTHO05D008284 2.1e-106 389.8 330 63.6
Gohir.A05G032100 Gossypium hirsutum HOM05D006355 ORTHO05D008284 2.1e-106 389.8 329 66.9
QL02p061794 Quercus lobata HOM05D006355 ORTHO05D008284 2.7e-106 389.4 330 63.0
Manes.16G098900 Manihot esculenta HOM05D006355 ORTHO05D008284 7.9e-106 387.9 331 64.0
QL02p061767 Quercus lobata HOM05D006355 ORTHO05D008284 1.0e-105 387.5 330 62.7
Haze_25952 Corylus avellana HOM05D006355 ORTHO05D008284 1.9e-104 383.3 329 63.2
Rhsim05G0014000 Rhododendron simsii HOM05D006355 ORTHO05D008284 1.6e-103 380.2 332 62.0
Cfa003044 Carpinus fangiana HOM05D006355 ORTHO05D008284 1.8e-102 376.7 329 62.6
Ciclev10008972m.g Citrus clementina HOM05D006355 ORTHO05D008284 4.0e-102 375.6 328 61.3
Lj4A288G20 Lonicera japonica HOM05D006355 ORTHO05D008284 7.6e-101 371.3 335 62.4
Potri.006G146200 Populus trichocarpa HOM05D006355 ORTHO05D008284 1.0e-100 370.9 331 61.9
Hma1.2p1_0672F.1_g200900 Hydrangea macrophylla HOM05D006355 ORTHO05D008284 5.5e-99 365.2 330 62.7
GSVIVG01015151001 Vitis vinifera HOM05D006355 ORTHO05D008284 5.5e-99 365.2 330 60.6
Peaxi162Scf00494g00027 Petunia axillaris HOM05D006355 ORTHO05D008284 8.7e-97 357.8 332 59.9
CANSAT56G3969 Cannabis sativa HOM05D006355 ORTHO05D008284 1.5e-96 357.1 333 60.1
CANSAT56G1278 Cannabis sativa HOM05D006355 ORTHO05D008284 2.5e-96 356.3 333 60.1
Migut.L01533 Erythranthe guttata HOM05D006355 ORTHO05D008284 2.5e-96 356.3 327 60.2
Nn8g38760 Nelumbo nucifera HOM05D006355 ORTHO05D008284 2.8e-95 352.8 327 60.6
Nn8g41302 Nelumbo nucifera HOM05D006355 ORTHO05D008284 2.8e-95 352.8 327 60.6
Sabra06G0115400 Salix brachista HOM05D006355 ORTHO05D008284 1.1e-94 350.9 371 55.3
Prupe.7G204300 Prunus persica HOM05D006355 ORTHO05D008284 1.2e-93 347.4 331 58.9
Nitab4.5_0002079g0060 Nicotiana tabacum HOM05D006355 ORTHO05D008284 1.5e-93 347.1 329 59.3
TWI34G0237 Tripterygium wilfordii HOM05D006355 ORTHO05D008284 2.0e-93 346.7 328 58.2
Glyma.13G107200 Glycine max HOM05D006355 ORTHO05D008284 3.4e-93 345.9 331 58.9
Aqoxy7G01135 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 7.6e-93 344.7 333 59.2
Cc06_g11800 Coffea canephora HOM05D006355 ORTHO05D008284 1.0e-92 344.4 331 57.4
Glyma.17G052200 Glycine max HOM05D006355 ORTHO05D008284 2.2e-92 343.2 334 59.0
Oeu010827.1 Olea europaea HOM05D006355 ORTHO05D008284 2.2e-92 343.2 331 57.1
Solyc07g041020.3 Solanum lycopersicum HOM05D006355 ORTHO05D008284 2.9e-92 342.8 329 57.4
ClCG11G001610 Citrullus lanatus HOM05D006355 ORTHO05D008284 3.8e-92 342.4 330 57.6
Eucgr.C00847 Eucalyptus grandis HOM05D006355 ORTHO05D008284 3.8e-92 342.4 332 57.5
Lj4g0004716 Lotus japonicus HOM05D006355 ORTHO05D008284 6.5e-92 341.7 331 57.7
SalBow1G0189 Salvia bowleyana HOM05D006355 ORTHO05D008284 9.3e-91 337.8 325 55.4
vmacro17166 Vaccinium macrocarpon HOM05D006355 ORTHO05D008284 1.2e-90 337.4 332 56.6
Sed0027351 Sechium edule HOM05D006355 ORTHO05D008284 2.7e-90 336.3 330 57.3
CAN.G35.5 Capsicum annuum HOM05D006355 ORTHO05D008284 3.5e-90 335.9 330 57.3
MELO3C004639.2 Cucumis melo HOM05D006355 ORTHO05D008284 4.6e-90 335.5 329 56.8
CsaV3_2G001300 Cucumis sativus L. HOM05D006355 ORTHO05D008284 4.6e-90 335.5 329 56.5
PGSC0003DMG400014101 Solanum tuberosum HOM05D006355 ORTHO05D008284 2.3e-89 333.2 329 57.8
RcHm_v2.0_Chr2g0094111 Rosa chinensis HOM05D006355 ORTHO05D008284 8.7e-89 331.3 331 57.1
Phvul.003G133900 Phaseolus vulgaris HOM05D006355 ORTHO05D008284 1.1e-88 330.9 334 56.9
Ca_21303_v3 Cicer arietinum L. HOM05D006355 ORTHO05D008284 1.5e-88 330.5 331 56.8
Sopen07g020150 Solanum pennellii HOM05D006355 ORTHO05D008284 9.7e-88 327.8 329 55.9
Nitab4.5_0002842g0040 Nicotiana tabacum HOM05D006355 ORTHO05D008284 2.8e-87 326.2 337 55.2
Lalb_Chr12g0199961 Lupinus albus HOM05D006355 ORTHO05D008284 8.2e-87 324.7 328 54.6
DCAR_024718 Daucus carota HOM05D006355 ORTHO05D008284 1.1e-86 324.3 335 54.9
Hund08706 Selenicereus undatus HOM05D006355 ORTHO05D008284 1.4e-86 323.9 344 57.0
arahy.Tifrunner.gnm1.ann1.I94R61 Arachis hypogaea HOM05D006355 ORTHO05D008284 5.3e-86 322.0 336 56.8
FvH4_1g08060 Fragaria vesca HOM05D006355 ORTHO05D008284 4.5e-85 318.9 331 57.1
FAN19G0491 Fragaria x ananassa HOM05D006355 ORTHO05D008284 4.5e-85 318.9 331 57.1
TPR.G9437 Trifolium pratense HOM05D006355 ORTHO05D008284 1.0e-84 317.8 331 55.0
ECA234G3558 Erigeron canadensis HOM05D006355 ORTHO05D008284 2.2e-84 316.6 331 53.2
Psat4g016280 Pisum sativum HOM05D006355 ORTHO05D008284 2.9e-84 316.2 332 55.1
FAN28G1606 Fragaria x ananassa HOM05D006355 ORTHO05D008284 8.5e-84 314.7 331 56.5
FAN23G1962 Fragaria x ananassa HOM05D006355 ORTHO05D008284 5.5e-83 312.0 331 56.8
SGA_v2.0_scaffold21G09447 Striga asiatica HOM05D006355 ORTHO05D008284 7.2e-83 311.6 330 53.9
FAN26G1509 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.6e-82 310.5 343 55.7
FAN26G2768 Fragaria x ananassa HOM05D006355 ORTHO05D008284 2.1e-82 310.1 343 55.4
Thhalv10022802m.g Eutrema salsugineum HOM05D006355 ORTHO05D008284 6.1e-82 308.5 329 53.5
Medtr4g125720 Medicago truncatula HOM05D006355 ORTHO05D008284 1.4e-81 307.4 331 52.6
Carub.0003s3364 Capsella rubella HOM05D006355 ORTHO05D008284 2.3e-81 306.6 330 51.5
PGR142G1993 Punica granatum HOM05D006355 ORTHO05D008284 2.0e-80 303.5 340 53.2
Sp3g32760 Schrenkiella parvula HOM05D006355 ORTHO05D008284 4.3e-80 302.4 330 53.3
HanXRQChr12g0354551 Helianthus annuus HOM05D006355 ORTHO05D008284 2.8e-79 299.7 331 52.0
CARHR109830 Cardamine hirsuta HOM05D006355 ORTHO05D008284 8.2e-79 298.1 332 50.9
MD02G1085300 Malus domestica HOM05D006355 ORTHO05D008284 2.4e-78 296.6 332 51.8
BcaB03g16724 Brassica carinata HOM05D006355 ORTHO05D008284 2.0e-77 293.5 332 51.2
AUR62025162 Chenopodium quinoa HOM05D006355 ORTHO05D008284 7.7e-77 291.6 328 53.4
Aa31LG8G16390 Aethionema arabicum HOM05D006355 ORTHO05D008284 1.0e-76 291.2 329 50.8
Lsat_1_v5_gn_5_143521 Lactuca sativa HOM05D006355 ORTHO05D008284 1.7e-76 290.4 323 51.4
AUR62029015 Chenopodium quinoa HOM05D006355 ORTHO05D008284 1.1e-75 287.7 330 52.4
AT2G19385 Arabidopsis thaliana HOM05D006355 ORTHO05D008284 1.4e-75 287.3 330 50.6
MD15G1212400 Malus domestica HOM05D006355 ORTHO05D008284 1.4e-75 287.3 334 51.2
Sc08g0008680 Simmondsia chinensis HOM05D006355 ORTHO05D008284 1.9e-75 287.0 333 52.6
AL3G48940 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 1.2e-74 284.3 330 49.4
MBI11_g07532_MAGBIO Magnolia biondii HOM05D006355 ORTHO05D008284 1.6e-74 283.9 333 52.6
Dinv36798 Davidia involucrata HOM05D006355 ORTHO05D008284 3.6e-74 282.7 272 57.7
Os01g0583200 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D008284 3.9e-73 279.3 330 50.3
ATR0051G027 Amborella trichopoda HOM05D006355 ORTHO05D008284 6.7e-73 278.5 332 49.7
C07p02840 Brassica napus HOM05D006355 ORTHO05D008284 6.7e-73 278.5 329 51.1
BolC7t40681H Brassica oleracea HOM05D006355 ORTHO05D008284 6.7e-73 278.5 329 51.1
A07p01380 Brassica napus HOM05D006355 ORTHO05D008284 2.0e-72 276.9 330 50.6
BraA07t27933Z Brassica rapa HOM05D006355 ORTHO05D008284 4.4e-72 275.8 330 50.6
BcaC06g36568 Brassica carinata HOM05D006355 ORTHO05D008284 5.7e-72 275.4 330 50.9
CDE06G0893 Ceratophyllum demersum HOM05D006355 ORTHO05D008284 1.3e-71 274.2 332 50.3
Zm00001eb357030 Zea mays HOM05D006355 ORTHO05D008284 3.7e-71 272.7 329 50.2
VMungo1215G0260 Vigna mungo HOM05D006355 ORTHO05D008284 8.2e-71 271.6 309 54.7
EL10Ac8g19156 Beta vulgaris HOM05D006355 ORTHO05D008284 1.1e-70 271.2 411 44.8
Actinidia25231 Actinidia chinensis HOM05D006355 ORTHO05D008284 1.0e-68 264.6 158 77.2
arahy.Tifrunner.gnm1.ann1.2VE13Z Arachis hypogaea HOM05D006355 ORTHO05D008284 1.7e-68 263.8 333 51.4
PSO832G0549 Papaver somniferum HOM05D006355 ORTHO05D008284 3.7e-63 246.1 340 47.9
PSO063G0296 Papaver somniferum HOM05D006355 ORTHO05D008284 1.8e-62 243.8 342 48.0
SEGI_15381 Sequoiadendron giganteum HOM05D006355 ORTHO05D008284 1.0e-57 228.0 330 43.3
HPP92_009733 Vanilla planifolia HOM05D006355 ORTHO05D008284 2.9e-52 209.9 333 39.6
Pp3c3_280 Physcomitrium patens HOM05D006355 ORTHO05D008284 1.5e-43 181.0 328 37.8
Mapoly0108s0017 Marchantia polymorpha HOM05D006355 ORTHO05D008284 3.3e-43 179.9 269 42.8
CBR_g39727 Chara braunii HOM05D006355 ORTHO05D008284 6.1e-42 175.6 193 50.8
AagrBONN_evm.TU.Sc2ySwM_228.3887 Anthoceros agrestis HOM05D006355 ORTHO05D008284 4.0e-41 172.9 163 52.8
SMO200G0211 Selaginella moellendorffii HOM05D006355 ORTHO05D008284 1.2e-40 171.4 332 36.1
CSS0037261 Camellia sinensis var. sinensis HOM05D006355 ORTHO05D008284 7.0e-38 162.2 267 43.1
unitig_8.g3528 Utricularia gibba HOM05D001583 ORTHO05D001900 7.0e-38 162.2 320 36.9
Carub.0003s3362 Capsella rubella HOM05D006355 ORTHO05D008284 3.5e-37 159.8 342 35.7
AL3G48950 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 2.5e-35 153.7 197 43.7
AT2G19380 Arabidopsis thaliana HOM05D006355 ORTHO05D011679 8.3e-31 138.7 340 32.1
SGA_v2.0_scaffold23G10049 Striga asiatica HOM05D006355 ORTHO05D008284 3.9e-28 129.8 364 30.5
Cre17.g701050 Chlamydomonas reinhardtii HOM05D006355 ORTHO05D008284 3.3e-27 126.7 137 45.3
PRCOL_00003845 Prasinoderma coloniale HOM05D006355 ORTHO05D008284 1.2e-26 124.8 129 46.5
MCO07G733 Micromonas commoda HOM05D006355 ORTHO05D008284 9.8e-24 115.2 147 42.2
SHI30664 Sapria himalayana HOM05D006355 ORTHO05D008284 1.6e-21 107.8 179 39.7
SHI23456 Sapria himalayana HOM05D006355 ORTHO05D008284 4.6e-21 106.3 57 77.2
SHI30666 Sapria himalayana HOM05D006355 ORTHO05D008284 1.3e-20 104.8 57 75.4
Aqoxy7G02122 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 1.9e-19 100.9 245 36.3
Migut.B00896 Erythranthe guttata HOM05D002142 ORTHO05D001189 2.1e-18 97.4 170 39.4
Aqoxy4G01928 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 8.1e-18 95.5 245 35.5
Actinidia25232 Actinidia chinensis HOM05D006355 ORTHO05D008284 4.7e-10 69.7 119 42.0
Os01g0583300 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D300111 3.4e-08 63.5 41 73.2
GSVIVG01008148001 Vitis vinifera HOM05D006355 ORTHO05D000948 7.1e-06 55.8 99 38.4


User provided reference genes

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