Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 1.7e-70 269.2 137 100.0
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 8.7e-67 256.9 137 93.4
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 4.3e-66 254.6 137 92.7
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 4.3e-66 254.6 137 92.7
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 4.3e-66 254.6 137 92.7
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.8e-64 249.2 137 91.2
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.8e-64 249.2 137 91.2
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 4.0e-64 248.1 137 90.5
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 4.0e-64 248.1 137 90.5
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 3.4e-63 245.0 137 87.6
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 7.6e-63 243.8 137 87.6
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 9.9e-63 243.4 137 87.6
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.7e-62 242.7 137 87.6
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 8.4e-62 240.4 137 86.9
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 1.1e-61 240.0 137 86.1
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 1.1e-61 240.0 135 88.1
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 1.4e-61 239.6 137 86.1
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 2.5e-61 238.8 137 86.1
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 4.2e-61 238.0 137 85.4
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 4.2e-61 238.0 137 85.4
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 7.1e-61 237.3 138 86.2
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 7.1e-61 237.3 137 86.1
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 9.3e-61 236.9 137 85.4
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 9.3e-61 236.9 137 87.6
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.2e-60 236.5 137 86.9
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 1.2e-60 236.5 137 86.1
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 2.1e-60 235.7 137 86.1
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 3.5e-60 235.0 129 89.9
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 4.6e-60 234.6 134 84.3
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 4.6e-60 234.6 137 86.9
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 7.9e-60 233.8 135 85.2
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 1.8e-59 232.6 132 85.6
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 2.3e-59 232.3 136 83.1
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 3.0e-59 231.9 144 83.3
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 3.9e-59 231.5 137 83.2
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 3.9e-59 231.5 142 85.2
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 5.1e-59 231.1 137 83.2
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 1.1e-58 229.9 137 83.2
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 1.1e-58 229.9 137 85.4
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 1.9e-58 229.2 137 84.7
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 1.9e-58 229.2 137 84.7
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 1.9e-58 229.2 137 81.8
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 2.5e-58 228.8 137 83.9
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 2.5e-58 228.8 131 84.7
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 3.3e-58 228.4 137 84.7
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 3.3e-58 228.4 140 82.9
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 3.3e-58 228.4 132 83.3
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 5.6e-58 227.6 137 83.2
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 5.6e-58 227.6 137 83.2
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 5.6e-58 227.6 137 83.2
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 5.6e-58 227.6 148 80.4
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 7.4e-58 227.3 137 83.2
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 7.4e-58 227.3 137 83.2
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 7.4e-58 227.3 137 83.2
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 7.4e-58 227.3 139 84.2
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 1.3e-57 226.5 137 83.2
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.3e-57 226.5 137 83.2
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 1.6e-57 226.1 145 80.7
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 1.6e-57 226.1 140 82.1
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.6e-57 226.1 164 75.0
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 2.1e-57 225.7 132 81.8
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 2.1e-57 225.7 132 81.8
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 2.1e-57 225.7 132 81.8
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 2.8e-57 225.3 132 83.3
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 2.8e-57 225.3 137 82.5
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 4.8e-57 224.6 137 81.8
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 6.2e-57 224.2 137 82.5
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 6.2e-57 224.2 138 81.9
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 4.0e-56 221.5 129 82.9
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 4.0e-56 221.5 138 80.4
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 5.3e-56 221.1 144 78.5
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 5.3e-56 221.1 137 82.5
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 5.3e-56 221.1 134 80.6
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 6.9e-56 220.7 137 81.8
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.5e-55 219.5 137 81.0
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 2.0e-55 219.2 137 76.6
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 2.0e-55 219.2 140 77.9
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 3.4e-55 218.4 137 76.6
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 1.0e-54 216.9 137 76.6
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 1.3e-54 216.5 169 71.6
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 1.3e-54 216.5 139 79.1
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 1.3e-54 216.5 144 76.4
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 8.4e-54 213.8 136 81.6
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 1.1e-53 213.4 140 74.3
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 1.1e-53 213.4 130 80.0
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 1.4e-53 213.0 136 77.9
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 4.2e-53 211.5 132 81.8
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 7.1e-53 210.7 123 85.4
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 1.6e-52 209.5 123 84.6
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 7.9e-52 207.2 129 78.3
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 1.8e-51 206.1 125 83.2
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 1.8e-51 206.1 125 83.2
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 1.8e-51 206.1 128 78.9
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 1.8e-51 206.1 132 75.0
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 2.3e-51 205.7 123 82.9
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 6.7e-51 204.1 125 84.0
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 1.9e-50 202.6 137 77.4
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 1.9e-50 202.6 137 77.4
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 1.3e-49 199.9 131 74.0
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 1.3e-49 199.9 134 72.4
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 1.3e-49 199.9 131 74.0
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 5.3e-48 194.5 110 88.2
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 5.3e-48 194.5 110 88.2
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 5.9e-47 191.0 115 85.2
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 7.7e-47 190.7 128 69.5
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 1.4e-45 186.4 110 85.5
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 1.9e-45 186.0 106 89.6
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 3.2e-45 185.3 109 82.6
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 9.4e-45 183.7 124 70.2
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 1.2e-44 183.3 109 81.7
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 1.6e-44 183.0 127 74.0
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 4.6e-44 181.4 139 69.1
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 4.6e-44 181.4 110 83.6
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 1.5e-42 176.4 110 81.8
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 1.7e-41 172.9 113 81.4
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 2.4e-40 169.1 126 70.6
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 1.0e-38 163.7 109 73.4
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 6.5e-38 161.0 112 75.0
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 1.9e-37 159.5 125 66.4
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 3.2e-37 158.7 140 65.0
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 2.1e-36 156.0 84 95.2
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 7.9e-36 154.1 85 91.8
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 2.3e-35 152.5 115 64.3
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 3.9e-35 151.8 132 59.1
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 2.6e-34 149.1 182 49.5
Duzib187G1493 Durio zibethinus HOM05D005002 ORTHO05D006016 1.8e-32 142.9 86 87.2
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 1.8e-32 142.9 84 88.1
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 1.7e-30 136.3 84 85.7
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 2.2e-30 136.0 84 83.3
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 1.2e-28 130.2 108 68.5
MBI15_g18374_MAGBIO Magnolia biondii HOM05D005002 ORTHO05D006016 2.7e-28 129.0 135 56.3
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 3.9e-27 125.2 104 57.7
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 4.4e-26 121.7 75 80.0
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 2.2e-25 119.4 120 56.7
Nitab4.5_0000668g0030 Nicotiana tabacum HOM05D005002 ORTHO05D006016 1.4e-24 116.7 64 85.9
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 2.0e-23 112.8 114 50.9
Lalb_Chr08g0233981 Lupinus albus HOM05D005002 ORTHO05D006016 4.5e-23 111.7 65 81.5
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 8.5e-22 107.5 93 60.2
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 7.2e-21 104.4 53 88.7
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 1.0e-19 100.5 53 86.8
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 8.8e-19 97.4 52 84.6
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 2.0e-18 96.3 121 41.3
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 2.2e-17 92.8 65 73.8
SEGI_02469 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 4.8e-17 91.7 62 74.2
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 7.0e-16 87.8 77 58.4
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 2.7e-15 85.9 61 72.1
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 2.7e-15 85.9 107 43.9
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 4.5e-15 85.1 61 68.9
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 2.5e-13 79.3 45 80.0
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 3.4e-10 68.9 88 48.9
Cre16.g657000 Chlamydomonas reinhardtii HOM05D005002 ORTHO05D006016 1.4e-08 63.5 120 35.0
SEGI_34318 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 2.0e-07 59.7 41 73.2
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 5.0e-06 55.1 51 58.8


User provided reference genes

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