Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 1.8e-62 242.7 149 100.0
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 1.6e-58 229.6 147 96.6
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 6.8e-57 224.2 149 92.6
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.3e-55 219.9 149 90.6
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 8.3e-55 217.2 149 89.3
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.8e-54 216.1 149 89.9
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 1.2e-53 213.4 124 91.9
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 4.3e-51 204.9 123 86.2
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 4.3e-51 204.9 124 87.1
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 5.6e-51 204.5 146 84.9
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 7.3e-51 204.1 148 80.4
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 2.8e-50 202.2 148 79.7
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 4.7e-50 201.4 125 84.0
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 6.2e-50 201.1 123 86.2
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 6.2e-50 201.1 123 86.2
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 8.0e-50 200.7 124 84.7
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 8.0e-50 200.7 124 84.7
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 1.1e-49 200.3 147 81.0
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 1.4e-49 199.9 123 85.4
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 1.4e-49 199.9 121 86.8
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.8e-49 199.5 121 86.8
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 4.0e-49 198.4 123 84.6
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 4.0e-49 198.4 123 84.6
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 4.0e-49 198.4 123 84.6
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 4.0e-49 198.4 123 84.6
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.0e-49 198.4 121 86.8
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 4.0e-49 198.4 121 86.0
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 4.0e-49 198.4 124 85.5
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.2e-49 198.0 121 86.0
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 7.5e-48 194.1 124 83.1
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 9.8e-48 193.7 121 83.5
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 9.8e-48 193.7 122 82.8
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 1.7e-47 193.0 124 81.5
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 1.7e-47 193.0 124 81.5
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 2.2e-47 192.6 124 82.3
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 2.2e-47 192.6 120 84.2
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 2.9e-47 192.2 122 82.0
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 4.9e-47 191.4 123 82.1
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 4.9e-47 191.4 122 81.1
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 8.3e-47 190.7 135 79.3
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 1.1e-46 190.3 122 79.5
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 1.1e-46 190.3 124 80.6
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 1.1e-46 190.3 120 81.7
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 1.4e-46 189.9 124 79.8
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 1.4e-46 189.9 123 82.1
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 1.9e-46 189.5 120 82.5
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 1.9e-46 189.5 124 80.6
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 1.9e-46 189.5 121 83.5
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 1.9e-46 189.5 120 83.3
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 3.2e-46 188.7 120 79.2
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 3.2e-46 188.7 124 79.0
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 4.1e-46 188.3 124 78.2
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 5.4e-46 188.0 121 81.0
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 7.0e-46 187.6 124 80.6
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 9.2e-46 187.2 120 79.2
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 9.2e-46 187.2 122 79.5
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 9.2e-46 187.2 122 79.5
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 1.2e-45 186.8 124 79.0
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 1.2e-45 186.8 122 79.5
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 1.6e-45 186.4 121 80.2
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 2.0e-45 186.0 120 82.5
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 2.7e-45 185.7 120 78.3
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 2.7e-45 185.7 120 78.3
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 2.7e-45 185.7 120 78.3
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 2.7e-45 185.7 120 78.3
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 2.7e-45 185.7 120 78.3
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 2.7e-45 185.7 123 78.0
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 3.5e-45 185.3 121 76.9
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 3.5e-45 185.3 120 79.2
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 3.5e-45 185.3 118 80.5
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 4.6e-45 184.9 120 77.5
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 4.6e-45 184.9 121 78.5
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 4.6e-45 184.9 124 77.4
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 6.0e-45 184.5 120 77.5
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 6.0e-45 184.5 119 81.5
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 6.0e-45 184.5 120 80.0
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 1.0e-44 183.7 122 78.7
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.7e-44 183.0 120 77.5
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 1.7e-44 183.0 121 76.9
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 1.7e-44 183.0 120 80.0
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 8.6e-44 180.6 122 79.5
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 8.6e-44 180.6 124 76.6
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 8.6e-44 180.6 122 77.0
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 1.5e-43 179.9 125 75.2
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 1.5e-43 179.9 129 74.4
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 1.5e-43 179.9 120 79.2
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 1.9e-43 179.5 125 74.4
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 1.9e-43 179.5 120 78.3
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 2.5e-43 179.1 123 75.6
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 4.3e-43 178.3 121 75.2
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 5.6e-43 177.9 118 77.1
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 5.6e-43 177.9 118 77.1
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 7.3e-43 177.6 123 74.0
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 9.5e-43 177.2 123 75.6
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 1.6e-42 176.4 121 73.6
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.6e-42 176.4 118 76.3
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 2.1e-42 176.0 122 78.7
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 4.7e-42 174.9 118 76.3
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 4.7e-42 174.9 118 75.4
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 4.7e-42 174.9 126 73.0
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 1.1e-41 173.7 120 75.8
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 1.8e-41 172.9 125 72.8
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 2.3e-41 172.6 121 72.7
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 1.2e-40 170.2 122 76.2
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 2.6e-40 169.1 116 75.0
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 4.9e-39 164.9 120 71.7
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 6.4e-39 164.5 117 70.9
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 8.3e-39 164.1 195 52.8
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 1.1e-38 163.7 104 83.7
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 7.1e-38 161.0 123 65.9
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 9.2e-38 160.6 121 76.0
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 6.0e-37 157.9 124 69.4
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 6.0e-37 157.9 100 84.0
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 1.0e-36 157.1 118 70.3
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 1.0e-36 157.1 100 84.0
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 1.3e-36 156.8 124 66.1
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 1.7e-36 156.4 100 82.0
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 6.6e-36 154.5 121 63.6
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.5e-35 152.5 94 84.0
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 4.3e-35 151.8 102 78.4
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 1.6e-34 149.8 117 66.7
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 1.4e-33 146.7 89 87.6
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 2.6e-32 142.5 120 60.0
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 1.3e-31 140.2 121 60.3
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 8.4e-31 137.5 83 86.7
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.4e-30 136.7 124 55.6
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 5.4e-30 134.8 122 54.9
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 1.5e-27 126.7 144 50.7
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 7.3e-27 124.4 120 52.5
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 4.7e-26 121.7 125 50.4
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.0e-25 118.6 101 66.3
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 1.9e-22 109.8 79 72.2
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 6.0e-21 104.8 91 59.3
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 6.0e-21 104.8 91 59.3
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 5.6e-19 98.2 65 76.9
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 7.3e-19 97.8 95 62.1
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 4.3e-11 72.0 83 56.6
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 4.3e-11 72.0 83 56.6
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 5.6e-11 71.6 70 62.9
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 1.3e-10 70.5 49 61.2
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 1.8e-09 66.6 47 70.2


User provided reference genes

Program Settings