Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G182300 Theobroma cacao HOM05D007304 ORTHO05D009233 3.0e-122 441.8 215 100.0
Duzib177G0769 Durio zibethinus HOM05D007304 ORTHO05D009233 3.2e-108 395.2 216 88.0
Gorai.005G074700 Gossypium raimondii HOM05D007304 ORTHO05D009233 2.8e-96 355.5 216 81.9
COL.COLO4_22675 Corchorus olitorius HOM05D007304 ORTHO05D009233 6.3e-96 354.4 194 87.6
Cfa018186 Carpinus fangiana HOM05D007304 ORTHO05D009233 5.3e-95 351.3 217 78.3
Gohir.A02G060400 Gossypium hirsutum HOM05D007304 ORTHO05D009233 3.8e-93 345.1 216 79.2
CiPaw.16G062000 Carya illinoinensis HOM05D007304 ORTHO05D009233 3.9e-90 335.1 217 74.7
Haze_17932 Corylus avellana HOM05D007304 ORTHO05D009233 2.6e-89 332.4 193 80.3
Manes.02G191500 Manihot esculenta HOM05D007304 ORTHO05D009233 4.4e-89 331.6 217 73.3
QL02p033889 Quercus lobata HOM05D007304 ORTHO05D009233 2.8e-88 328.9 217 74.7
Gohir.D02G065833 Gossypium hirsutum HOM05D007304 ORTHO05D009233 2.0e-86 322.8 194 80.9
Potri.013G113500 Populus trichocarpa HOM05D007304 ORTHO05D009233 2.0e-86 322.8 217 71.9
CSS0049262 Camellia sinensis var. sinensis HOM05D007304 ORTHO05D009233 2.5e-84 315.8 217 69.6
Atru.chr13.1788 Acer truncatum HOM05D007304 ORTHO05D009233 7.2e-84 314.3 216 71.3
Atru.chr13.1792 Acer truncatum HOM05D007304 ORTHO05D009233 7.2e-84 314.3 216 71.3
Ciclev10002467m.g Citrus clementina HOM05D007304 ORTHO05D009233 1.1e-81 307.0 215 68.8
RhsimUnG0069500 Rhododendron simsii HOM05D007304 ORTHO05D009233 4.4e-81 305.1 217 68.2
Rhsim11G0060100 Rhododendron simsii HOM05D007304 ORTHO05D009233 2.4e-79 299.3 217 67.3
Sed0026932 Sechium edule HOM05D007304 ORTHO05D009233 5.3e-79 298.1 217 64.1
GSVIVG01034475001 Vitis vinifera HOM05D007304 ORTHO05D009233 3.5e-78 295.4 217 67.3
MSTRG.22445 Avicennia marina HOM05D007304 ORTHO05D009233 7.7e-78 294.3 216 63.9
Sabra13G0096200 Salix brachista HOM05D007304 ORTHO05D009233 1.3e-77 293.5 189 72.0
ClCG11G008190 Citrullus lanatus HOM05D007304 ORTHO05D009233 1.7e-77 293.1 217 64.1
TAR376G0332 Trochodendron aralioides HOM05D007304 ORTHO05D009233 3.8e-77 292.0 222 66.7
MELO3C008119.2 Cucumis melo HOM05D007304 ORTHO05D009233 6.5e-77 291.2 217 64.5
CsaV3_2G033470 Cucumis sativus L. HOM05D007304 ORTHO05D009233 1.5e-76 290.0 217 64.5
TPR.G8829 Trifolium pratense HOM05D007304 ORTHO05D009233 1.5e-76 290.0 217 65.9
Migut.N03345 Erythranthe guttata HOM05D007304 ORTHO05D009233 5.5e-76 288.1 216 63.0
Dinv41708 Davidia involucrata HOM05D007304 ORTHO05D009233 9.4e-76 287.3 204 71.6
Lj5g0021067 Lotus japonicus HOM05D007304 ORTHO05D009233 1.6e-75 286.6 219 64.4
RcHm_v2.0_Chr7g0219041 Rosa chinensis HOM05D007304 ORTHO05D009233 1.6e-75 286.6 218 66.5
SalBow6G2896 Salvia bowleyana HOM05D007304 ORTHO05D009233 1.6e-75 286.6 219 63.0
FAN04G0833 Fragaria x ananassa HOM05D007304 ORTHO05D009233 2.1e-75 286.2 217 65.4
FAN13G2406 Fragaria x ananassa HOM05D007304 ORTHO05D009233 3.6e-75 285.4 217 65.4
FvH4_5g27630 Fragaria vesca HOM05D007304 ORTHO05D009233 8.0e-75 284.3 217 65.0
Lalb_Chr06g0162071 Lupinus albus HOM05D007304 ORTHO05D009233 1.0e-74 283.9 217 64.5
TWI32G0836 Tripterygium wilfordii HOM05D007304 ORTHO05D009233 1.4e-74 283.5 193 71.0
Sopen11g009380 Solanum pennellii HOM05D007304 ORTHO05D009233 5.2e-74 281.6 217 62.7
Peaxi162Scf00310g00614 Petunia axillaris HOM05D007304 ORTHO05D009233 6.8e-74 281.2 217 63.6
Ca_10612_v3 Cicer arietinum L. HOM05D007304 ORTHO05D009233 8.8e-74 280.8 214 64.0
PGSC0003DMG400009226 Solanum tuberosum HOM05D007304 ORTHO05D009233 1.2e-73 280.4 218 62.4
arahy.Tifrunner.gnm1.ann1.W17VPE Arachis hypogaea HOM05D007304 ORTHO05D009233 2.0e-73 279.6 218 65.1
Medtr1g096340 Medicago truncatula HOM05D007304 ORTHO05D009233 2.6e-73 279.3 217 64.5
Oeu039601.1 Olea europaea HOM05D007304 ORTHO05D009233 2.6e-73 279.3 216 63.0
arahy.Tifrunner.gnm1.ann1.E78XAF Arachis hypogaea HOM05D007304 ORTHO05D009233 3.4e-73 278.9 218 64.7
Nitab4.5_0000560g0190 Nicotiana tabacum HOM05D007304 ORTHO05D009233 5.7e-73 278.1 219 63.0
Glyma.20G175900 Glycine max HOM05D007304 ORTHO05D009233 7.5e-73 277.7 217 62.2
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 9.8e-73 277.3 202 67.3
Psat6g187320 Pisum sativum HOM05D007304 ORTHO05D009233 9.8e-73 277.3 221 64.3
THA.LOC104816302 Tarenaya hassleriana HOM05D007304 ORTHO05D009233 2.8e-72 275.8 216 64.4
Nitab4.5_0000422g0040 Nicotiana tabacum HOM05D007304 ORTHO05D009233 3.7e-72 275.4 218 61.5
VMungo0720G1999 Vigna mungo HOM05D007304 ORTHO05D009233 8.3e-72 274.2 217 62.7
Phvul.007G089900 Phaseolus vulgaris HOM05D007304 ORTHO05D009233 1.8e-71 273.1 217 63.6
CAN.G1530.5 Capsicum annuum HOM05D007304 ORTHO05D009233 3.1e-71 272.3 218 60.6
MD05G1041300 Malus domestica HOM05D007304 ORTHO05D009233 4.1e-71 271.9 194 68.0
Nn5g27732 Nelumbo nucifera HOM05D007304 ORTHO05D009233 4.1e-71 271.9 212 64.2
PGR102G2268 Punica granatum HOM05D007304 ORTHO05D009233 7.0e-71 271.2 224 62.1
CANSAT25G3778 Cannabis sativa HOM05D007304 ORTHO05D009233 9.1e-71 270.8 219 62.1
Cc10_g11390 Coffea canephora HOM05D007304 ORTHO05D009233 1.6e-70 270.0 181 65.7
DCAR_011537 Daucus carota HOM05D007304 ORTHO05D009233 1.3e-69 266.9 193 64.8
SGA_v2.0_scaffold149G36602 Striga asiatica HOM05D007304 ORTHO05D009233 1.3e-69 266.9 219 57.5
AUR62004650 Chenopodium quinoa HOM05D007304 ORTHO05D009233 2.9e-69 265.8 193 64.2
AUR62023569 Chenopodium quinoa HOM05D007304 ORTHO05D009233 2.5e-68 262.7 215 59.5
ECA246G3843 Erigeron canadensis HOM05D007304 ORTHO05D009233 2.5e-68 262.7 217 62.2
Hund27084 Selenicereus undatus HOM05D007304 ORTHO05D009233 1.2e-67 260.4 222 60.4
Lj4P501T9 Lonicera japonica HOM05D007304 ORTHO05D009233 3.6e-67 258.8 174 67.8
EL10Ac8g20249 Beta vulgaris HOM05D007304 ORTHO05D009233 1.4e-66 256.9 219 59.4
HanXRQChr05g0150521 Helianthus annuus HOM05D007304 ORTHO05D009233 1.4e-66 256.9 216 60.2
Ah.07g202740 Amaranthus hybridus HOM05D007304 ORTHO05D009233 1.8e-66 256.5 217 60.4
AL6G43210 Arabidopsis lyrata HOM05D007304 ORTHO05D009233 1.8e-66 256.5 218 60.1
Aqoxy5G02599 Aquilegia oxysepala HOM05D007304 ORTHO05D009233 1.2e-65 253.8 158 72.2
Carub.0006s2806 Capsella rubella HOM05D007304 ORTHO05D009233 1.2e-65 253.8 219 58.4
PSO063G3154 Papaver somniferum HOM05D007304 ORTHO05D009233 3.4e-65 252.3 217 59.0
CARHR260470 Cardamine hirsuta HOM05D007304 ORTHO05D009233 4.4e-65 251.9 218 59.2
MBI17_g27205_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 1.7e-64 250.0 221 57.9
AT4G09620 Arabidopsis thaliana HOM05D007304 ORTHO05D009233 3.7e-64 248.8 218 57.8
Lsat_1_v5_gn_6_109640 Lactuca sativa HOM05D007304 ORTHO05D009233 8.3e-64 247.7 214 58.9
PSO017G3329 Papaver somniferum HOM05D007304 ORTHO05D009233 1.1e-63 247.3 219 57.5
Sp6g07990 Schrenkiella parvula HOM05D007304 ORTHO05D009233 4.5e-62 241.9 218 56.9
Thhalv10028979m.g Eutrema salsugineum HOM05D007304 ORTHO05D009233 5.9e-62 241.5 215 56.7
Aa31LG9G14900 Aethionema arabicum HOM05D007304 ORTHO05D009233 1.3e-61 240.4 216 54.6
BraA03t12064Z Brassica rapa HOM05D007304 ORTHO05D009233 1.3e-61 240.4 219 55.7
BcaC01g04711 Brassica carinata HOM05D007304 ORTHO05D009233 3.8e-61 238.8 218 56.4
C03p34620 Brassica napus HOM05D007304 ORTHO05D009233 5.0e-61 238.4 218 56.4
BolC3t15773H Brassica oleracea HOM05D007304 ORTHO05D009233 5.0e-61 238.4 218 56.4
A03p28640 Brassica napus HOM05D007304 ORTHO05D009233 8.6e-61 237.7 219 55.3
Sc26g0000380 Simmondsia chinensis HOM05D007304 ORTHO05D009233 8.0e-59 231.1 210 51.4
SEGI_32747 Sequoiadendron giganteum HOM05D007304 ORTHO05D009233 4.4e-57 225.3 215 54.4
Eucgr.F04126 Eucalyptus grandis HOM05D007304 ORTHO05D009233 1.4e-55 220.3 197 58.4
HPP92_003142 Vanilla planifolia HOM05D007304 ORTHO05D009233 4.1e-55 218.8 137 70.8
Cpa.g.sc66.48 Carica papaya HOM05D007304 ORTHO05D009233 3.3e-52 209.1 162 62.3
Zm00001eb063940 Zea mays HOM05D007304 ORTHO05D009233 2.0e-49 199.9 159 58.5
Os03g0838900 Oryza sativa ssp. japonica HOM05D007304 ORTHO05D009233 1.3e-48 197.2 191 49.7
unitig_21.g20192 Utricularia gibba HOM05D007304 ORTHO05D009233 2.8e-43 179.5 152 53.3
SMO200G0124 Selaginella moellendorffii HOM05D007304 ORTHO05D009233 6.8e-42 174.9 134 54.5
Prupe.8G057100 Prunus persica HOM05D007304 ORTHO05D009233 5.8e-41 171.8 147 62.6
Mapoly0175s0009 Marchantia polymorpha HOM05D007304 ORTHO05D009233 7.5e-41 171.4 158 50.0
BcaB01g02784 Brassica carinata HOM05D007304 ORTHO05D009233 2.4e-39 166.4 231 40.3
AagrBONN_evm.TU.Sc2ySwM_117.12 Anthoceros agrestis HOM05D007304 ORTHO05D009233 4.7e-35 152.1 193 40.4
SalBow6G1917 Salvia bowleyana HOM05D007304 ORTHO05D009233 5.2e-34 148.7 140 55.0
Pp3c24_12240 Physcomitrium patens HOM05D007304 ORTHO05D009233 3.4e-33 146.0 184 40.2
CDE02G2755 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.0e-29 134.4 82 73.2
Cre10.g445100 Chlamydomonas reinhardtii HOM05D007304 ORTHO05D009233 1.2e-25 120.9 145 38.6
Solyc11g017430.3 Solanum lycopersicum HOM05D007304 ORTHO05D009233 2.5e-20 103.2 52 80.8
MCO03G180 Micromonas commoda HOM05D007304 ORTHO05D009233 4.3e-20 102.4 156 36.5
MBI11_g39361_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 2.2e-16 90.1 56 73.2
MD10G1047700 Malus domestica HOM05D007304 ORTHO05D009233 3.0e-13 79.7 44 77.3
Zm00001eb272990 Zea mays HOM05D007304 ORTHO05D009233 2.1e-06 57.0 47 51.1


User provided reference genes

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