Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 3.8e-227 791.2 402 100.0
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 1.8e-181 639.4 340 93.5
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 1.0e-176 623.6 339 91.2
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 1.4e-176 623.2 345 90.4
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 2.6e-175 619.0 333 91.9
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 1.3e-174 616.7 339 90.0
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 3.7e-174 615.1 337 90.5
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 3.7e-174 615.1 340 89.7
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 6.3e-174 614.4 340 89.7
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 8.2e-174 614.0 371 84.6
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 9.1e-173 610.5 340 88.8
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 9.1e-173 610.5 340 88.8
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 9.1e-173 610.5 340 88.8
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 2.6e-172 609.0 340 88.8
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 2.6e-172 609.0 340 88.2
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 4.5e-172 608.2 340 88.5
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 1.0e-171 607.1 340 89.1
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 1.0e-171 607.1 348 85.6
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 2.2e-171 605.9 333 88.9
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 2.9e-171 605.5 332 88.9
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 6.5e-171 604.4 333 88.3
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 1.9e-170 602.8 340 87.9
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 1.9e-170 602.8 334 88.3
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 3.2e-170 602.1 340 87.9
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 4.2e-170 601.7 340 87.4
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 4.2e-170 601.7 339 87.3
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 1.2e-169 600.1 340 87.1
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 1.6e-169 599.7 340 86.5
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 2.1e-169 599.4 338 87.0
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 3.6e-169 598.6 333 87.4
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 3.6e-169 598.6 340 86.2
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 3.6e-169 598.6 340 86.2
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 4.7e-169 598.2 340 85.6
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 4.7e-169 598.2 340 86.2
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 1.4e-168 596.7 340 86.5
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 1.8e-168 596.3 339 86.1
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 1.8e-168 596.3 340 85.9
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 2.3e-168 595.9 336 87.5
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 4.0e-168 595.1 340 85.9
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 4.0e-168 595.1 333 85.9
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 5.2e-168 594.7 340 87.1
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 5.2e-168 594.7 340 86.5
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 5.2e-168 594.7 342 86.0
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 8.8e-168 594.0 340 85.9
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 8.8e-168 594.0 340 87.1
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 1.1e-167 593.6 342 86.0
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 1.1e-167 593.6 333 87.4
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 1.5e-167 593.2 340 85.0
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 1.5e-167 593.2 333 87.7
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 4.4e-167 591.7 340 84.7
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 5.7e-167 591.3 340 84.7
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 7.5e-167 590.9 332 87.3
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 9.7e-167 590.5 340 84.7
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 1.3e-166 590.1 340 85.0
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 2.2e-166 589.3 343 86.0
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 2.2e-166 589.3 339 87.9
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 3.7e-166 588.6 343 85.4
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 4.8e-166 588.2 343 85.4
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 6.3e-166 587.8 343 85.4
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 6.3e-166 587.8 336 86.3
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 6.3e-166 587.8 340 85.0
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 8.2e-166 587.4 333 84.7
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 1.1e-165 587.0 336 86.3
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 1.1e-165 587.0 366 80.6
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 1.1e-165 587.0 360 81.7
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 1.4e-165 586.6 343 85.1
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 1.4e-165 586.6 334 86.2
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 1.8e-165 586.3 343 85.1
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 3.1e-165 585.5 340 84.4
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 3.1e-165 585.5 334 85.9
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 4.1e-165 585.1 343 85.1
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 7.0e-165 584.3 341 85.0
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 7.0e-165 584.3 343 85.4
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 9.1e-165 583.9 340 85.3
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 1.2e-164 583.6 336 85.1
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 1.2e-164 583.6 329 87.2
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 2.0e-164 582.8 340 83.8
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 2.0e-164 582.8 340 85.0
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 2.0e-164 582.8 340 83.8
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 2.0e-164 582.8 334 84.4
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 4.5e-164 581.6 327 86.2
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 5.9e-164 581.3 334 86.2
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 5.9e-164 581.3 332 85.8
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 1.0e-163 580.5 340 84.4
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 1.7e-163 579.7 333 87.1
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 3.8e-163 578.6 340 84.7
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 6.5e-163 577.8 345 83.2
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 6.5e-163 577.8 332 84.9
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 1.9e-162 576.2 377 77.7
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 4.2e-162 575.1 333 83.5
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 2.1e-161 572.8 329 84.8
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 3.6e-161 572.0 340 82.9
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 3.0e-160 568.9 340 82.9
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 5.2e-160 568.2 329 83.6
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 5.2e-160 568.2 340 83.2
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 8.8e-160 567.4 339 82.9
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 8.8e-160 567.4 340 82.4
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 1.5e-159 566.6 340 80.6
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 2.8e-158 562.4 315 87.3
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 1.6e-156 556.6 339 80.5
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 2.0e-156 556.2 396 74.5
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 1.3e-155 553.5 388 72.9
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 5.0e-155 551.6 344 78.2
Ah.05g174550 Amaranthus hybridus HOM05D004324 ORTHO05D004840 3.6e-153 545.4 354 76.3
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 4.0e-152 542.0 395 71.4
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 2.6e-151 539.3 344 76.7
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 1.3e-150 537.0 332 78.3
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 4.1e-149 531.9 322 79.5
Glyma.03G028000 Glycine max HOM05D004324 ORTHO05D004840 4.5e-148 528.5 341 74.5
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 2.3e-147 526.2 340 75.6
Lj7A531T56 Lonicera japonica HOM05D004324 ORTHO05D004840 2.1e-145 519.6 340 77.9
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 1.2e-143 513.8 343 73.8
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 2.0e-143 513.1 344 74.1
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 2.2e-142 509.6 328 75.3
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 6.8e-136 488.0 356 69.9
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 9.8e-135 484.2 313 73.5
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 9.5e-130 467.6 322 70.8
COL.COLO4_24608 Corchorus olitorius HOM05D004324 ORTHO05D004840 1.1e-128 464.2 335 71.9
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 8.6e-123 444.5 319 67.4
Dinv43690 Davidia involucrata HOM05D004324 ORTHO05D004840 6.2e-121 438.3 340 69.1
Sed0023731 Sechium edule HOM05D004324 ORTHO05D004840 4.9e-118 428.7 253 83.8
Atru.chr5.284 Acer truncatum HOM05D004324 ORTHO05D004840 1.4e-117 427.2 252 84.5
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 1.4e-112 410.6 239 83.7
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 3.2e-109 399.4 245 81.6
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 9.3e-109 397.9 249 78.3
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 5.1e-107 392.1 326 62.6
FvH4_7g11450 Fragaria vesca HOM05D004324 ORTHO05D004840 1.5e-106 390.6 220 87.7
Medtr4g024940 Medicago truncatula HOM05D004324 ORTHO05D004840 6.2e-105 385.2 234 79.9
MBI04_g35670_MAGBIO Magnolia biondii HOM05D004324 ORTHO05D004840 4.0e-104 382.5 214 86.0
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 7.1e-101 371.7 208 87.5
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 5.8e-95 352.1 194 88.7
Gohir.A05G252532 Gossypium hirsutum HOM05D004324 ORTHO05D004840 1.7e-94 350.5 187 91.4
Psat6g218040 Pisum sativum HOM05D004324 ORTHO05D004840 1.9e-93 347.1 326 55.5
AagrBONN_evm.TU.Sc2ySwM_368.1743 Anthoceros agrestis HOM05D004324 ORTHO05D004840 4.0e-88 329.3 193 80.3
Medtr0088s0100 Medicago truncatula HOM05D004324 ORTHO05D004840 1.0e-86 324.7 323 54.2
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 4.5e-79 299.3 242 62.8
Sc26g0001270 Simmondsia chinensis HOM05D004324 ORTHO05D004840 3.0e-75 286.6 171 81.9
Psat6g218080 Pisum sativum HOM05D004324 ORTHO05D004840 4.3e-74 282.7 195 67.2
RcHm_v2.0_Chr1g0349761 Rosa chinensis HOM05D004324 ORTHO05D004840 2.0e-66 257.3 146 87.7
Gohir.A05G252466 Gossypium hirsutum HOM05D004324 ORTHO05D004840 3.7e-65 253.1 135 92.6
AL6G42730 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 5.0e-54 216.1 145 73.1
Psat6g217960 Pisum sativum HOM05D004324 ORTHO05D004840 4.0e-51 206.5 155 63.9
CDE02G4314 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 1.6e-44 184.5 148 66.2
arahy.Tifrunner.gnm1.ann1.V33WN8 Arachis hypogaea HOM05D004324 ORTHO05D004840 1.5e-37 161.4 87 87.4
Actinidia02863 Actinidia chinensis HOM05D004324 ORTHO05D004840 7.2e-37 159.1 95 80.0
Duzib177G0443 Durio zibethinus HOM05D004324 ORTHO05D004840 2.2e-33 147.5 101 77.2
MD02G1206600 Malus domestica HOM05D004324 ORTHO05D004840 2.2e-33 147.5 96 76.0
MD02G1206500 Malus domestica HOM05D004324 ORTHO05D004840 2.7e-31 140.6 74 90.5
SEGI_10460 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 5.9e-31 139.4 148 54.7
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 2.1e-28 131.0 87 72.4
CAN.G23.23 Capsicum annuum HOM05D004324 ORTHO05D004840 1.8e-27 127.9 78 75.6
Duzib106G1980 Durio zibethinus HOM05D004324 ORTHO05D004840 4.0e-27 126.7 129 55.0
Sc26g0001260 Simmondsia chinensis HOM05D004324 ORTHO05D004840 5.0e-22 109.8 127 53.5
Actinidia02867 Actinidia chinensis HOM05D004324 ORTHO05D004840 5.6e-21 106.3 101 57.4
Prupe.7G087800 Prunus persica HOM05D004324 ORTHO05D004840 4.7e-20 103.2 124 53.2
Actinidia31395 Actinidia chinensis HOM05D004324 ORTHO05D004840 5.2e-19 99.8 70 70.0
Pp3s30_709 Physcomitrium patens HOM05D004324 ORTHO05D004840 6.8e-19 99.4 208 33.7
MCO07G634 Micromonas commoda HOM05D004324 ORTHO05D004840 4.4e-18 96.7 292 28.4
Psat0s13993g0040 Pisum sativum HOM05D004324 ORTHO05D004840 1.3e-17 95.1 74 63.5
Cfa025533 Carpinus fangiana HOM05D000146 ORTHO05D004840 6.4e-17 92.8 320 26.9
Ca_28979_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 2.4e-16 90.9 281 29.5
Cfa023222 Carpinus fangiana HOM05D004324 ORTHO05D004840 1.5e-13 81.6 271 29.9
Actinidia02866 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.3e-11 74.3 103 45.6
Prupe.2G076400 Prunus persica HOM05D004324 ORTHO05D004840 1.5e-10 71.6 53 69.8
Cfa024978 Carpinus fangiana HOM05D004324 ORTHO05D034102 3.4e-10 70.5 194 28.9
Medtr4g019730 Medicago truncatula HOM05D000814 ORTHO05D004840 1.1e-08 65.5 42 71.4
Aa31sc49G50 Aethionema arabicum HOM05D004324 ORTHO05D004840 9.2e-08 62.4 45 68.9


User provided reference genes

Program Settings