Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 0.0e+00 3929.0 2111 100.0
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 0.0e+00 2630.9 2178 70.4
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 0.0e+00 2582.0 2163 70.6
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 0.0e+00 2501.5 2171 67.8
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 0.0e+00 2498.0 2195 65.4
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 0.0e+00 2456.8 2175 67.3
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 0.0e+00 1626.3 1207 77.1
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 0.0e+00 1196.4 2038 43.0
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 0.0e+00 1193.7 2144 42.5
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 0.0e+00 1169.1 2159 43.4
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 0.0e+00 1153.7 2164 42.0
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 0.0e+00 1143.3 2149 43.1
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 0.0e+00 1101.7 2203 41.4
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 0.0e+00 1094.7 2275 42.1
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.6e-308 1063.9 2170 40.9
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 2.0e-303 1047.0 2264 41.1
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 2.4e-296 1023.5 2214 40.5
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 1.5e-295 1020.8 2166 39.9
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.8e-291 1007.3 792 75.6
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 4.8e-289 999.2 2270 39.6
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 3.5e-276 956.4 1863 41.7
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 4.5e-271 939.5 2080 39.6
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 7.9e-268 928.7 1942 40.7
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 1.4e-264 917.9 2158 38.6
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 2.2e-249 867.5 2148 37.5
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 2.0e-239 834.3 1998 37.7
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 2.6e-234 817.4 1870 37.5
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 7.0e-232 809.3 2132 36.7
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 1.5e-226 791.6 2095 36.8
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 5.4e-224 783.1 2128 36.2
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.2e-223 781.9 2132 36.7
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 1.5e-221 775.0 2194 35.2
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 4.7e-220 770.0 2017 37.0
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.0e-218 764.6 1176 47.1
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 5.8e-218 763.1 2116 36.5
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 2.3e-214 751.1 1917 38.1
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 9.5e-213 745.7 2241 36.3
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 1.2e-212 745.3 2093 35.9
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 4.7e-212 743.4 1920 37.4
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 4.0e-211 740.3 1916 37.5
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 5.4e-208 729.9 1903 37.5
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 1.5e-205 721.8 1979 36.0
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 2.8e-204 717.6 785 61.0
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 8.3e-201 706.1 2158 35.9
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 3.6e-196 690.6 2217 34.5
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 2.0e-194 684.9 2231 34.8
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 1.1e-192 679.1 2139 35.1
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 6.0e-191 673.3 1043 46.4
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 5.1e-190 670.2 1940 35.4
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.5e-189 668.7 2148 34.9
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 2.8e-188 664.5 738 59.3
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 9.3e-184 649.4 1934 35.9
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 4.8e-180 637.1 1933 34.6
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 2.4e-179 634.8 2073 33.3
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 6.9e-179 633.3 2163 33.0
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 9.3e-176 622.9 2114 33.9
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 2.5e-173 614.8 2054 34.4
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 1.6e-172 612.1 2368 32.1
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 2.8e-172 611.3 2149 32.3
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 1.3e-169 602.4 2112 33.4
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.2e-162 579.3 2193 31.8
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 2.2e-161 575.1 2143 32.0
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 2.2e-161 575.1 2085 32.0
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 1.4e-160 572.4 2143 31.9
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 5.5e-152 543.9 489 69.5
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 2.7e-151 541.6 1951 33.4
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 4.3e-149 534.3 2136 31.8
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 4.1e-147 527.7 989 43.2
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 1.5e-146 525.8 1988 31.3
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 2.6e-146 525.0 1892 32.4
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 2.9e-145 521.5 2110 29.1
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 2.9e-145 521.5 1048 43.0
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 3.8e-145 521.2 2081 31.9
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 8.5e-145 520.0 2073 30.9
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.9e-144 518.8 973 44.6
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 3.2e-144 518.1 2067 30.3
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 4.7e-143 514.2 2042 32.7
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 7.9e-143 513.5 940 45.0
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 3.9e-142 511.1 1000 43.0
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 2.6e-141 508.4 997 43.2
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 5.7e-141 507.3 2030 29.7
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 1.1e-139 503.1 866 45.8
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 2.6e-138 498.4 866 45.2
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 1.3e-137 496.1 1953 32.3
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 3.6e-135 488.0 739 49.1
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 3.6e-135 488.0 739 49.1
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 8.0e-135 486.9 844 46.3
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 1.0e-134 486.5 848 44.2
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 3.0e-134 485.0 1973 29.6
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 1.3e-132 479.6 888 45.3
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 4.1e-131 474.6 2165 31.6
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 2.6e-130 471.9 840 45.7
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 6.5e-129 467.2 818 46.8
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 1.9e-128 465.7 1075 39.0
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 4.2e-128 464.5 2331 29.7
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 2.0e-125 455.7 816 47.2
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 9.8e-125 453.4 826 41.5
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 6.3e-124 450.7 864 44.3
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 4.7e-119 434.5 747 48.1
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 4.7e-119 434.5 551 54.8
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 6.8e-118 430.6 876 43.4
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.7e-116 426.0 698 43.7
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 2.0e-109 402.5 905 40.1
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 1.8e-107 396.0 495 49.3
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 3.1e-102 378.6 887 39.5
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 8.9e-102 377.1 855 40.4
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 1.6e-98 366.3 1064 36.7
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 2.6e-93 349.0 915 38.3
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 8.4e-84 317.4 797 35.6
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 5.1e-73 281.6 761 39.7
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 2.4e-70 272.7 345 57.1
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 3.2e-67 262.3 254 56.7
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 9.6e-64 250.8 661 34.3
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 2.1e-58 233.0 878 30.0
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 6.7e-57 228.0 1543 27.9
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 1.9e-56 226.5 281 60.1
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 5.6e-56 224.9 1562 26.4
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 1.1e-51 210.7 740 34.2
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 1.0e-49 204.1 891 29.4
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 4.5e-45 188.7 544 34.4
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 5.1e-41 175.3 221 46.6
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 3.3e-40 172.6 1668 26.9
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 1.3e-39 170.6 744 33.5
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 3.1e-38 166.0 144 61.8
Dinv14698 Davidia involucrata HOM05D000237 ORTHO05D006530 1.4e-35 157.1 1140 26.3
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 3.3e-32 146.0 211 41.7
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 4.3e-32 145.6 207 60.9
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 4.3e-32 145.6 99 73.7
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 4.7e-26 125.6 326 33.7
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 1.4e-25 124.0 140 51.4
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 3.9e-25 122.5 136 47.1
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 2.9e-20 106.3 101 63.4
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 1.8e-17 97.1 238 33.6
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 3.7e-15 89.4 144 39.6
SEGI_15365 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 1.4e-14 87.4 676 26.6
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 2.0e-13 83.6 130 39.2
Lj4P681T20 Lonicera japonica HOM05D000237 ORTHO05D006530 2.7e-13 83.2 129 44.2
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 7.2e-11 75.1 142 30.3
BraA06t24858Z Brassica rapa HOM05D000237 ORTHO05D006530 9.1e-06 58.2 111 37.8
Oeu047175.1 Olea europaea HOM05D000237 ORTHO05D006530 9.1e-06 58.2 134 30.6


User provided reference genes

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