Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G110500 Theobroma cacao HOM05D000446 ORTHO05D000321 9.8e-29 129.4 64 100.0
Thecc.08G110300 Theobroma cacao HOM05D000446 ORTHO05D000321 4.4e-13 77.4 53 69.8
Duzib116G0865 Durio zibethinus HOM05D000446 ORTHO05D000321 5.8e-13 77.0 53 71.7
Duzib041G0808 Durio zibethinus HOM05D000446 ORTHO05D000321 5.4e-11 70.5 53 60.4
Potri.005G168500 Populus trichocarpa HOM05D000446 ORTHO05D000321 2.7e-10 68.2 57 56.1
COL.COLO4_16441 Corchorus olitorius HOM05D000446 ORTHO05D000321 3.5e-10 67.8 50 68.0
COL.COLO4_16443 Corchorus olitorius HOM05D000446 ORTHO05D000321 4.6e-10 67.4 53 66.0
Sabra05G0126100 Salix brachista HOM05D000446 ORTHO05D000321 7.8e-10 66.6 57 56.1
Thecc.08G110400 Theobroma cacao HOM05D000446 ORTHO05D000321 7.8e-10 66.6 53 62.3
COL.COLO4_16442 Corchorus olitorius HOM05D000446 ORTHO05D000321 1.0e-09 66.2 53 60.4
EL10Ac1g01256 Beta vulgaris HOM05D000446 ORTHO05D000321 1.3e-09 65.9 53 58.5
Duzib093G0963 Durio zibethinus HOM05D000446 ORTHO05D000321 1.7e-09 65.5 53 58.5
TWI36G1269 Tripterygium wilfordii HOM05D000446 ORTHO05D000321 2.3e-09 65.1 57 56.1
Potri.002G094000 Populus trichocarpa HOM05D000446 ORTHO05D000321 3.9e-09 64.3 57 57.9
vmacro04756 Vaccinium macrocarpon HOM05D000446 ORTHO05D000321 3.9e-09 64.3 46 63.0
Actinidia29583 Actinidia chinensis HOM05D000446 ORTHO05D000321 5.0e-09 63.9 53 58.5
Rhsim07G0201100 Rhododendron simsii HOM05D000446 ORTHO05D000321 5.0e-09 63.9 46 63.0
QL12p036147 Quercus lobata HOM05D000446 ORTHO05D000321 6.6e-09 63.5 52 55.8
Manes.02G154700 Manihot esculenta HOM05D000446 ORTHO05D000321 8.6e-09 63.2 53 60.4
Ah.05g170280 Amaranthus hybridus HOM05D000446 ORTHO05D000321 1.1e-08 62.8 53 52.8
Cc10_g07480 Coffea canephora HOM05D000446 ORTHO05D000321 1.1e-08 62.8 53 56.6
TAR628G1029 Trochodendron aralioides HOM05D000446 ORTHO05D000321 1.1e-08 62.8 53 56.6
Cc10_g07490 Coffea canephora HOM05D000446 ORTHO05D000321 1.5e-08 62.4 53 58.5
vmacro04755 Vaccinium macrocarpon HOM05D000446 ORTHO05D000321 1.5e-08 62.4 46 60.9
Rhsim07G0201000 Rhododendron simsii HOM05D000446 ORTHO05D000321 2.5e-08 61.6 51 60.8
vmacro04757 Vaccinium macrocarpon HOM05D000446 ORTHO05D000321 3.3e-08 61.2 46 58.7
Gohir.A01G186301 Gossypium hirsutum HOM05D000446 ORTHO05D000321 4.3e-08 60.8 53 54.7
Sabra02G0074100 Salix brachista HOM05D000446 ORTHO05D000321 4.3e-08 60.8 57 56.1
CiPaw.05G235900 Carya illinoinensis HOM05D000446 ORTHO05D000321 5.6e-08 60.5 52 57.7
Sabra02G0074000 Salix brachista HOM05D000446 ORTHO05D000321 5.6e-08 60.5 53 54.7
Gohir.D01G176950 Gossypium hirsutum HOM05D000446 ORTHO05D000321 7.3e-08 60.1 53 54.7
Gorai.002G219200 Gossypium raimondii HOM05D000446 ORTHO05D000321 7.3e-08 60.1 53 54.7
Manes.18G069300 Manihot esculenta HOM05D000446 ORTHO05D000321 7.3e-08 60.1 53 54.7
Gohir.D05G230900 Gossypium hirsutum HOM05D000446 ORTHO05D000321 1.2e-07 59.3 53 54.7
Gorai.005G093300 Gossypium raimondii HOM05D000446 ORTHO05D000321 1.2e-07 59.3 53 56.6
Gorai.009G239100 Gossypium raimondii HOM05D000446 ORTHO05D000321 1.2e-07 59.3 53 54.7
Manes.18G069200 Manihot esculenta HOM05D000446 ORTHO05D000321 1.2e-07 59.3 57 47.4
AUR62027725 Chenopodium quinoa HOM05D000446 ORTHO05D000321 1.6e-07 58.9 54 50.0
Phvul.008G171800 Phaseolus vulgaris HOM05D000446 ORTHO05D000321 1.6e-07 58.9 53 52.8
Potri.005G168400 Populus trichocarpa HOM05D000446 ORTHO05D000321 1.6e-07 58.9 57 49.1
Gohir.A05G228500 Gossypium hirsutum HOM05D000446 ORTHO05D000321 2.1e-07 58.5 53 54.7
PSO447G0305 Papaver somniferum HOM05D000446 ORTHO05D000321 2.8e-07 58.2 53 52.8
MSTRG.938 Avicennia marina HOM05D000446 ORTHO05D000321 3.6e-07 57.8 53 50.9
CANSAT25G2235 Cannabis sativa HOM05D000446 ORTHO05D000321 3.6e-07 57.8 45 57.8
Dinv31044 Davidia involucrata HOM05D000446 ORTHO05D000321 3.6e-07 57.8 53 56.6
Dinv31056 Davidia involucrata HOM05D000446 ORTHO05D000321 3.6e-07 57.8 53 56.6
Lj1g0003127 Lotus japonicus HOM05D000446 ORTHO05D000321 3.6e-07 57.8 53 52.8
GSVIVG01009003001 Vitis vinifera HOM05D000446 ORTHO05D000321 3.6e-07 57.8 52 53.8
arahy.Tifrunner.gnm1.ann1.09DD91 Arachis hypogaea HOM05D000446 ORTHO05D000321 4.7e-07 57.4 53 50.9
Duzib116G0194 Durio zibethinus HOM05D000446 ORTHO05D000321 4.7e-07 57.4 57 52.6
Gohir.D02G083000 Gossypium hirsutum HOM05D000446 ORTHO05D000321 4.7e-07 57.4 53 54.7
Actinidia33148 Actinidia chinensis HOM05D000446 ORTHO05D000321 6.2e-07 57.0 53 54.7
Lj4C106T5 Lonicera japonica HOM05D000446 ORTHO05D000321 6.2e-07 57.0 53 56.6
Gohir.A02G075800 Gossypium hirsutum HOM05D000446 ORTHO05D000321 8.1e-07 56.6 53 52.8
Nitab4.5_0000469g0080 Nicotiana tabacum HOM05D000446 ORTHO05D000321 8.1e-07 56.6 50 54.0
Nitab4.5_0003496g0020 Nicotiana tabacum HOM05D000446 ORTHO05D000321 8.1e-07 56.6 50 54.0
PSO210G5030 Papaver somniferum HOM05D000446 ORTHO05D000321 8.1e-07 56.6 53 52.8
Cfa015914 Carpinus fangiana HOM05D000446 ORTHO05D000321 1.1e-06 56.2 52 50.0
Peaxi162Scf00041g00314 Petunia axillaris HOM05D000446 ORTHO05D000321 1.1e-06 56.2 53 49.1
Thecc.08G110200 Theobroma cacao HOM05D000446 ORTHO05D000321 1.1e-06 56.2 57 50.9
Haze_00579 Corylus avellana HOM05D000446 ORTHO05D000321 1.4e-06 55.8 52 50.0
Lj4A720G64 Lonicera japonica HOM05D000446 ORTHO05D000321 1.8e-06 55.5 53 52.8
Lj4C716G14 Lonicera japonica HOM05D000446 ORTHO05D000321 1.8e-06 55.5 53 52.8
Psat2g074720 Pisum sativum HOM05D000446 ORTHO05D000321 1.8e-06 55.5 53 49.1
Aqoxy5G02287 Aquilegia oxysepala HOM05D000446 ORTHO05D000321 2.3e-06 55.1 46 56.5
arahy.Tifrunner.gnm1.ann1.48KEPM Arachis hypogaea HOM05D000446 ORTHO05D000321 2.3e-06 55.1 53 49.1
Cpa.g.sc66.81 Carica papaya HOM05D000446 ORTHO05D000321 2.3e-06 55.1 46 56.5
Oeu057381.1 Olea europaea HOM05D000446 ORTHO05D000321 2.3e-06 55.1 57 45.6
Solyc04g072850.4 Solanum lycopersicum HOM05D000446 ORTHO05D000321 2.3e-06 55.1 53 47.2
Sopen04g029000 Solanum pennellii HOM05D000446 ORTHO05D000321 2.3e-06 55.1 53 47.2
unitig_0.g2062 Utricularia gibba HOM05D000446 ORTHO05D000321 2.3e-06 55.1 53 52.8
CAN.G517.8 Capsicum annuum HOM05D000446 ORTHO05D000321 3.1e-06 54.7 46 54.3
Ca_27273_v3 Cicer arietinum L. HOM05D000446 ORTHO05D000321 3.1e-06 54.7 53 47.2
Dinv44753 Davidia involucrata HOM05D000446 ORTHO05D005675 3.1e-06 54.7 45 60.0
FvH4_5g37840 Fragaria vesca HOM05D000446 ORTHO05D000321 3.1e-06 54.7 47 53.2
FAN18G1351 Fragaria x ananassa HOM05D000446 ORTHO05D000321 3.1e-06 54.7 47 53.2
Glyma.06G105300 Glycine max HOM05D000446 ORTHO05D000321 3.1e-06 54.7 53 52.8
Lalb_Chr08g0241911 Lupinus albus HOM05D000446 ORTHO05D000321 3.1e-06 54.7 47 59.6
Gohir.D02G082900 Gossypium hirsutum HOM05D000446 ORTHO05D000321 4.0e-06 54.3 53 49.1
Potri.002G093900 Populus trichocarpa HOM05D000446 ORTHO05D000321 4.0e-06 54.3 53 50.9
FAN04G2324 Fragaria x ananassa HOM05D000446 ORTHO05D000321 5.2e-06 53.9 47 53.2
Lalb_Chr20g0114671 Lupinus albus HOM05D000446 ORTHO05D000321 5.2e-06 53.9 53 49.1
Manes.18G069400 Manihot esculenta HOM05D000446 ORTHO05D000321 5.2e-06 53.9 51 51.0
Phvul.008G153300 Phaseolus vulgaris HOM05D000446 ORTHO05D000321 5.2e-06 53.9 53 49.1
PGSC0003DMG400009484 Solanum tuberosum HOM05D000446 ORTHO05D000321 5.2e-06 53.9 53 47.2
TPR.G35205 Trifolium pratense HOM05D000446 ORTHO05D000321 5.2e-06 53.9 53 52.8
FAN08G1086 Fragaria x ananassa HOM05D000446 ORTHO05D000321 6.8e-06 53.5 47 53.2
MD08G1179900 Malus domestica HOM05D000446 ORTHO05D000321 6.8e-06 53.5 47 53.2
Prupe.1G513200 Prunus persica HOM05D000446 ORTHO05D000321 6.8e-06 53.5 52 50.0
Ah.11g046790 Amaranthus hybridus HOM05D000446 ORTHO05D000321 8.9e-06 53.1 53 47.2
CiPaw.06G020900 Carya illinoinensis HOM05D000446 ORTHO05D000321 8.9e-06 53.1 56 46.4
Ciclev10000352m.g Citrus clementina HOM05D000446 ORTHO05D000321 8.9e-06 53.1 53 52.8
Gorai.002G219100 Gossypium raimondii HOM05D000446 ORTHO05D000321 8.9e-06 53.1 57 50.9
Nn1g05300 Nelumbo nucifera HOM05D000446 ORTHO05D000321 8.9e-06 53.1 57 43.9


User provided reference genes

Program Settings