Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 4.2e-301 1037.3 560 100.0
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 3.0e-259 898.3 560 87.1
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.2e-252 876.3 560 83.0
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 1.6e-252 875.9 559 84.8
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 2.1e-252 875.5 560 81.4
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.8e-252 875.2 560 83.8
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.5e-250 869.4 560 83.4
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 5.6e-237 824.3 552 77.7
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 9.9e-226 786.9 552 77.4
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 4.3e-197 691.8 451 77.4
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.3e-177 627.1 572 62.9
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 6.5e-177 624.8 556 62.8
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 1.4e-171 607.1 568 60.9
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 6.9e-171 604.7 568 60.7
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 4.2e-168 595.5 558 61.3
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 1.6e-167 593.6 569 58.9
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 7.0e-163 578.2 571 55.3
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 5.0e-161 572.0 570 58.9
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 2.1e-159 566.6 559 54.4
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 4.7e-159 565.5 531 56.7
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 1.5e-157 560.5 566 56.4
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 1.5e-157 560.5 558 56.3
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 9.7e-157 557.8 547 55.6
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 3.7e-156 555.8 563 55.2
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 8.2e-156 554.7 572 57.2
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.4e-155 553.9 566 56.9
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 2.4e-155 553.1 566 56.7
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 1.2e-154 550.8 560 57.9
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 2.0e-154 550.1 559 54.2
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.0e-153 547.7 536 54.9
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 1.3e-153 547.4 614 52.3
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 1.7e-153 547.0 539 55.5
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 3.2e-152 542.7 546 56.6
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.2e-152 541.6 546 56.4
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 2.1e-151 540.0 544 56.2
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 3.6e-151 539.3 545 55.6
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.8e-150 537.0 536 56.7
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 3.0e-150 536.2 558 53.0
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 1.2e-149 534.3 575 54.4
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 2.0e-149 533.5 556 55.0
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 4.4e-149 532.3 494 58.3
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 4.8e-148 528.9 558 52.5
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 6.3e-148 528.5 557 53.3
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 1.8e-147 526.9 560 52.1
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 9.1e-147 524.6 538 55.9
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 2.0e-146 523.5 563 52.4
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 3.3e-144 516.2 572 50.7
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 7.2e-144 515.0 572 50.2
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 3.0e-142 509.6 554 56.0
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 4.0e-142 509.2 544 50.9
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 6.8e-142 508.4 565 54.3
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 1.5e-141 507.3 571 54.3
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 2.6e-141 506.5 564 54.1
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 4.4e-141 505.8 525 51.8
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 1.6e-138 497.3 554 51.1
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 1.6e-138 497.3 549 52.6
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 2.0e-138 496.9 564 54.6
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 5.9e-138 495.4 548 50.5
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 1.0e-137 494.6 522 51.5
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 1.7e-137 493.8 554 49.8
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 2.3e-137 493.4 522 51.5
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 2.3e-137 493.4 522 51.5
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 6.6e-137 491.9 522 51.3
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 1.5e-136 490.7 544 50.2
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 2.5e-136 490.0 522 51.1
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.5e-136 490.0 486 57.2
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 4.3e-136 489.2 545 50.6
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 1.8e-134 483.8 566 52.5
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 3.0e-134 483.0 547 49.9
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 4.0e-134 482.6 538 50.9
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 3.4e-133 479.6 554 49.6
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 1.3e-132 477.6 554 50.2
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 2.2e-132 476.9 588 51.2
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 2.9e-132 476.5 569 50.6
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.2e-130 471.1 572 49.1
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 1.6e-130 470.7 596 47.5
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 6.0e-130 468.8 553 50.8
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 1.3e-129 467.6 542 52.8
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 1.9e-128 463.8 561 51.3
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 4.3e-128 462.6 592 45.3
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 1.8e-126 457.2 584 47.4
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 1.2e-125 454.5 586 47.1
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 9.8e-125 451.4 586 47.3
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.3e-124 451.1 604 44.5
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 1.3e-124 451.1 588 47.4
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 8.3e-124 448.4 552 47.1
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 4.1e-123 446.0 567 49.0
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 7.8e-122 441.8 562 46.3
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 1.3e-121 441.0 573 46.4
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 3.9e-121 439.5 577 43.7
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 8.6e-121 438.3 576 47.9
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 7.3e-120 435.3 574 46.9
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 7.3e-120 435.3 602 43.7
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 1.4e-118 431.0 557 47.6
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 4.0e-118 429.5 581 46.8
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 4.9e-116 422.5 565 47.3
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 2.3e-113 413.7 523 51.1
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 1.4e-110 404.4 598 44.6
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 1.9e-107 394.0 312 59.0
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 4.6e-106 389.4 541 44.2
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 8.7e-105 385.2 332 57.5
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 2.5e-104 383.6 596 42.4
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 2.8e-103 380.2 522 47.3
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 1.2e-101 374.8 593 40.1
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 3.2e-99 366.7 525 42.9
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 3.5e-98 363.2 554 41.2
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 1.3e-97 361.3 726 36.5
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 1.3e-97 361.3 486 43.6
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 3.0e-97 360.1 546 41.4
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 5.1e-97 359.4 563 42.1
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 6.2e-95 352.4 470 44.3
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 8.1e-95 352.1 653 37.5
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 1.2e-90 338.2 570 40.9
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 5.8e-85 319.3 540 39.6
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 3.2e-83 313.5 449 43.9
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 7.6e-77 292.4 522 37.4
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.2e-74 285.0 561 34.2
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 8.7e-73 278.9 602 35.9
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 1.5e-64 251.5 203 58.6
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 1.3e-63 248.4 264 48.5
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 4.8e-63 246.5 637 30.0
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 9.1e-62 242.3 471 39.5
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 1.9e-59 234.6 657 28.2
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 5.5e-59 233.0 514 37.0
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 1.6e-58 231.5 441 42.4
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 2.3e-57 227.6 329 37.1
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 7.7e-45 186.0 174 51.1
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.2e-39 167.9 550 28.2
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 8.3e-39 166.0 481 26.2
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 1.4e-38 165.2 151 53.6
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 3.1e-38 164.1 162 63.0
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 7.7e-37 159.5 297 30.0
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 5.0e-36 156.8 185 51.4
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 2.1e-34 151.4 283 32.2
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 5.4e-30 136.7 131 51.9
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 1.9e-27 128.3 317 29.0
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 6.3e-23 113.2 174 35.6
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 7.0e-22 109.8 79 59.5
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.0e-22 109.8 79 59.5
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 1.3e-15 89.0 124 47.6
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 8.9e-09 66.2 94 41.5
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 3.2e-06 57.8 69 44.9


User provided reference genes

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