Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 1.6e-211 739.2 369 100.0
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 2.5e-129 466.1 370 68.1
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 3.1e-119 432.6 370 64.9
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 6.3e-112 408.3 369 61.2
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 2.6e-89 333.2 369 55.0
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 2.2e-88 330.1 369 54.5
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 5.5e-84 315.5 375 53.1
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 3.2e-63 246.5 372 45.7
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 5.4e-63 245.7 369 46.6
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 2.1e-62 243.8 373 46.4
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 2.1e-62 243.8 372 45.4
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 1.3e-61 241.1 385 44.4
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 3.9e-61 239.6 379 44.9
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 1.6e-59 234.2 372 45.7
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 8.3e-56 221.9 375 44.3
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 9.2e-55 218.4 370 43.0
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 1.6e-54 217.6 377 41.9
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 4.6e-54 216.1 420 39.8
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 1.3e-53 214.5 379 43.5
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 3.9e-53 213.0 382 41.4
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 1.2e-51 208.0 381 41.2
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 1.2e-51 208.0 372 39.8
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 1.6e-51 207.6 372 39.8
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 1.4e-50 204.5 375 42.7
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 1.2e-49 201.4 373 41.0
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.7e-48 197.6 367 41.1
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 7.1e-47 192.2 373 40.5
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 9.3e-47 191.8 348 41.4
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 1.7e-45 187.6 371 41.0
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 3.9e-45 186.4 369 39.6
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 5.6e-44 182.6 368 39.9
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 2.8e-43 180.3 369 38.8
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 1.8e-42 177.6 359 37.9
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 9.9e-41 171.8 427 34.7
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 2.4e-39 167.2 407 37.8
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 2.7e-38 163.7 371 35.3
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 2.7e-38 163.7 368 39.4
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 5.1e-37 159.5 371 37.7
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 1.9e-36 157.5 377 35.3
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 4.3e-36 156.4 369 35.8
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 3.6e-35 153.3 369 35.2
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 8.1e-35 152.1 377 36.3
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 1.1e-34 151.8 368 35.9
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 7.6e-33 145.6 390 32.3
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 9.9e-33 145.2 370 34.3
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 2.9e-32 143.7 367 33.5
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 8.4e-32 142.1 383 36.8
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 1.1e-31 141.7 382 36.1
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 1.4e-31 141.4 378 35.7
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 1.4e-31 141.4 379 36.1
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 1.9e-31 141.0 429 33.8
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 3.2e-31 140.2 370 35.9
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 7.1e-31 139.0 407 33.7
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 9.3e-31 138.7 373 33.5
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 9.3e-31 138.7 378 37.0
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 1.6e-30 137.9 382 34.8
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 1.1e-28 131.7 437 32.5
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 4.3e-28 129.8 368 35.9
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 5.6e-28 129.4 386 31.3
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 7.4e-28 129.0 362 35.9
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 1.3e-27 128.3 440 31.8
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 1.3e-27 128.3 325 36.6
FAN18G3411 Fragaria x ananassa HOM05D006001 ORTHO05D006714 2.1e-27 127.5 447 31.1
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 3.7e-27 126.7 371 36.1
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 1.4e-26 124.8 366 35.2
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 4.0e-26 123.2 367 35.1
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 4.0e-26 123.2 370 36.8
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 9.0e-26 122.1 441 31.3
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 1.2e-25 121.7 367 34.6
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 1.2e-25 121.7 410 33.4
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 1.2e-25 121.7 379 35.1
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 2.0e-25 120.9 375 33.9
FvH4_5g34870 Fragaria vesca HOM05D006001 ORTHO05D006714 3.4e-25 120.2 436 30.3
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 7.6e-25 119.0 377 36.1
FAN13G1830 Fragaria x ananassa HOM05D006001 ORTHO05D006714 2.9e-24 117.1 438 31.7
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 4.9e-24 116.3 375 33.1
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 1.1e-23 115.2 371 34.0
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 1.1e-23 115.2 372 33.9
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 1.4e-23 114.8 371 35.0
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 4.2e-23 113.2 369 34.1
TAR376G0788 Trochodendron aralioides HOM05D006001 ORTHO05D006714 4.2e-23 113.2 257 35.0
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 5.5e-23 112.8 425 32.5
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 7.1e-23 112.5 365 33.7
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 9.3e-23 112.1 369 33.6
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 1.6e-22 111.3 374 34.2
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 2.1e-22 110.9 372 33.3
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 1.0e-21 108.6 379 33.8
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 1.1e-20 105.1 377 32.6
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 1.9e-20 104.4 381 32.0
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 2.5e-20 104.0 390 31.5
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 2.5e-20 104.0 430 30.7
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 5.7e-20 102.8 377 32.4
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 7.4e-20 102.4 371 31.8
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 1.6e-19 101.3 398 27.4
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 2.4e-18 97.4 139 43.9
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 4.1e-18 96.7 381 32.0
ATR0767G016 Amborella trichopoda HOM05D006001 ORTHO05D006714 9.0e-18 95.5 379 31.4
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 1.5e-17 94.7 367 29.7
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 2.6e-17 94.0 265 34.7
HPP92_021096 Vanilla planifolia HOM05D006001 ORTHO05D006714 3.4e-17 93.6 379 32.2
THA.LOC104799788 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 4.5e-17 93.2 320 32.5
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 2.5e-15 87.4 374 29.4
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 3.2e-15 87.0 91 53.8
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 7.1e-15 85.9 388 27.8
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 7.1e-15 85.9 375 29.9
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 1.6e-14 84.7 333 30.0
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 7.9e-14 82.4 140 44.3
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 2.3e-13 80.9 379 30.6
EL10Ac1g00506 Beta vulgaris HOM05D034668 ORTHO05D006714 1.9e-12 77.8 413 28.6
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.9e-12 77.8 133 42.9
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 1.9e-12 77.8 197 37.1
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 3.3e-12 77.0 377 28.9
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 1.8e-10 71.2 196 34.7
vmacro17886 Vaccinium macrocarpon HOM05D006001 ORTHO05D006714 4.1e-10 70.1 61 62.3
CDE04G0496 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.5e-09 68.2 368 29.9
SHI11237 Sapria himalayana HOM05D006001 ORTHO05D006714 2.6e-09 67.4 219 32.0
CDE06G2159 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 5.9e-09 66.2 108 38.9
CAN.G475.17 Capsicum annuum HOM05D006001 ORTHO05D006714 1.0e-08 65.5 76 48.7
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 1.7e-08 64.7 106 40.6
DCAR_002596 Daucus carota HOM05D006001 ORTHO05D006714 8.5e-08 62.4 99 44.4
Nitab4.5_0000131g0110 Nicotiana tabacum HOM05D006001 ORTHO05D006714 8.5e-08 62.4 227 30.4
DCAR_000919 Daucus carota HOM05D006001 ORTHO05D006714 3.2e-07 60.5 99 43.4
HanXRQChr13g0425671 Helianthus annuus HOM05D006001 ORTHO05D006714 3.2e-07 60.5 93 38.7
Peaxi162Scf00454g00211 Petunia axillaris HOM05D006001 ORTHO05D006714 5.5e-07 59.7 366 26.8
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 7.2e-07 59.3 557 24.6
CDE06G2035 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.2e-06 58.5 72 48.6
HanXRQChr13g0425801 Helianthus annuus HOM05D006001 ORTHO05D006714 2.1e-06 57.8 80 47.5
ECA240G2279 Erigeron canadensis HOM05D006001 ORTHO05D006714 2.7e-06 57.4 391 25.3


User provided reference genes

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