Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 3.2e-65 251.5 120 100.0
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 1.4e-52 209.5 121 85.1
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 5.3e-52 207.6 120 82.5
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 5.3e-52 207.6 120 82.5
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 5.3e-52 207.6 120 82.5
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.2e-34 149.1 121 59.5
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.2e-34 149.1 121 60.3
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.8e-34 148.3 121 60.3
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 1.1e-33 146.7 120 58.3
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 4.2e-33 144.8 121 59.5
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 4.2e-33 144.8 123 60.2
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 9.4e-33 143.7 122 59.0
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 9.4e-33 143.7 119 57.1
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 9.4e-33 143.7 120 55.0
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 9.4e-33 143.7 120 59.2
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 1.2e-32 143.3 121 57.0
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 2.1e-32 142.5 123 60.2
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 3.6e-32 141.7 120 57.5
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 4.7e-32 141.4 120 55.8
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 6.1e-32 141.0 121 54.5
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 6.1e-32 141.0 120 56.7
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 8.0e-32 140.6 120 57.5
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 8.0e-32 140.6 124 54.8
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 1.0e-31 140.2 120 55.0
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 1.0e-31 140.2 120 58.3
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.8e-31 139.4 120 55.0
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 3.9e-31 138.3 120 54.2
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 3.9e-31 138.3 122 57.4
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 6.7e-31 137.5 118 55.9
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 8.8e-31 137.1 120 54.2
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 8.8e-31 137.1 122 56.6
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 8.8e-31 137.1 124 54.0
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 1.1e-30 136.7 122 56.6
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 1.1e-30 136.7 122 56.6
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 1.1e-30 136.7 122 56.6
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 1.1e-30 136.7 122 56.6
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 1.1e-30 136.7 122 56.6
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 1.1e-30 136.7 122 56.6
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 1.1e-30 136.7 120 55.8
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 1.5e-30 136.3 122 56.6
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 1.5e-30 136.3 120 54.2
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 2.0e-30 136.0 124 58.1
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 2.0e-30 136.0 120 55.8
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 2.0e-30 136.0 120 55.8
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 3.3e-30 135.2 120 53.3
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 3.3e-30 135.2 120 53.3
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 4.4e-30 134.8 118 52.5
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 4.4e-30 134.8 120 54.2
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 5.7e-30 134.4 120 53.3
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 5.7e-30 134.4 119 52.9
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 7.4e-30 134.0 122 54.9
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 7.4e-30 134.0 122 54.9
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 7.4e-30 134.0 122 54.9
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 9.7e-30 133.7 122 54.9
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 9.7e-30 133.7 114 55.3
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 1.3e-29 133.3 122 54.9
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.7e-29 132.9 120 52.5
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 1.7e-29 132.9 123 52.8
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 1.7e-29 132.9 120 51.7
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 2.2e-29 132.5 122 55.7
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 2.2e-29 132.5 118 54.2
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 3.7e-29 131.7 120 54.2
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 8.2e-29 130.6 122 54.1
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 1.1e-28 130.2 122 52.5
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 1.1e-28 130.2 120 53.3
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 1.1e-28 130.2 120 53.3
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 1.4e-28 129.8 122 52.5
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 1.4e-28 129.8 118 51.7
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 2.4e-28 129.0 120 54.2
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 3.1e-28 128.6 124 51.6
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 3.1e-28 128.6 124 51.6
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 5.3e-28 127.9 120 52.5
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 5.3e-28 127.9 120 52.5
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 9.1e-28 127.1 120 53.3
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 2.0e-27 125.9 120 52.5
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 2.0e-27 125.9 120 51.7
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 3.5e-27 125.2 125 50.4
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 3.5e-27 125.2 125 52.8
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 1.0e-26 123.6 118 45.8
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 5.0e-26 121.3 103 58.3
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 1.1e-25 120.2 117 49.6
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 1.5e-25 119.8 113 50.4
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 3.2e-25 118.6 117 47.9
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 5.5e-25 117.9 122 45.9
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 9.4e-25 117.1 110 49.1
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 2.1e-24 115.9 118 50.0
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 2.1e-24 115.9 120 47.5
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 3.6e-24 115.2 118 45.8
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 4.7e-24 114.8 113 48.7
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 1.4e-23 113.2 96 53.1
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.8e-23 112.8 120 48.3
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 2.3e-23 112.5 122 45.1
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 2.3e-23 112.5 126 46.0
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 5.2e-23 111.3 123 47.2
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 6.7e-23 110.9 106 51.9
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 8.8e-23 110.5 118 48.3
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 2.0e-22 109.4 126 46.8
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 2.0e-22 109.4 112 46.4
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 1.3e-21 106.7 119 47.9
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 1.3e-21 106.7 126 43.7
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 2.8e-21 105.5 124 41.9
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 4.8e-21 104.8 121 44.6
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 1.4e-20 103.2 116 49.1
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 2.0e-19 99.4 120 43.3
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.2e-16 90.1 67 61.2
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 3.6e-16 88.6 156 33.3
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 3.6e-16 88.6 112 38.4
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 5.2e-15 84.7 88 48.9
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 1.2e-14 83.6 83 51.8
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 1.5e-14 83.2 85 49.4
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 4.4e-14 81.6 77 53.2
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 1.3e-13 80.1 91 47.3
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 6.3e-13 77.8 123 35.8
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 1.1e-12 77.0 54 63.0
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 1.8e-12 76.3 76 50.0
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 7.0e-12 74.3 62 53.2
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 9.1e-12 73.9 66 51.5
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 4.5e-11 71.6 56 55.4
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 7.7e-11 70.9 53 54.7
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 8.6e-10 67.4 71 47.9
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 8.6e-10 67.4 53 56.6
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 3.3e-09 65.5 104 36.5
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 4.2e-09 65.1 63 42.9
COL.COLO4_26123 Corchorus olitorius HOM05D005168 ORTHO05D006358 4.7e-08 61.6 39 82.1
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 4.7e-08 61.6 81 39.5
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 1.0e-07 60.5 71 43.7
Glyma.11G172400 Glycine max HOM05D005168 ORTHO05D006358 1.8e-07 59.7 71 42.3
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 3.0e-07 58.9 39 64.1
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 3.0e-07 58.9 67 44.8
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 4.0e-07 58.5 67 44.8
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 6.8e-07 57.8 44 54.5
ClCG08G014180 Citrullus lanatus HOM05D005168 ORTHO05D006358 3.4e-06 55.5 71 42.3


User provided reference genes

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