Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 4.6e-200 701.0 362 100.0
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 7.9e-176 620.5 362 88.4
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 4.8e-173 611.3 362 88.4
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 5.3e-164 581.3 362 84.3
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 4.5e-163 578.2 362 84.0
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 5.9e-147 524.6 366 75.1
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 1.5e-142 510.0 361 74.5
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 1.7e-141 506.5 347 76.9
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 9.1e-140 500.7 366 73.2
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 7.7e-139 497.7 359 72.4
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 6.5e-138 494.6 364 72.8
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 1.1e-137 493.8 358 74.0
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 1.5e-137 493.4 360 71.7
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 5.5e-137 491.5 361 73.1
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 5.5e-137 491.5 363 72.5
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 1.4e-135 486.9 362 70.4
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 4.0e-135 485.3 342 73.7
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 1.2e-134 483.8 363 70.2
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 5.7e-134 481.5 360 70.8
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 1.3e-133 480.3 362 72.4
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 1.1e-132 477.2 362 70.4
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 2.3e-130 469.5 364 69.5
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 6.6e-130 468.0 364 69.0
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 4.3e-129 465.3 301 78.7
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 1.4e-127 460.3 358 69.0
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 3.0e-127 459.1 305 77.7
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 3.0e-127 459.1 382 67.3
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 6.8e-127 458.0 305 77.4
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 3.4e-126 455.7 361 66.8
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 4.4e-126 455.3 368 67.1
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 5.7e-126 454.9 403 64.0
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 1.7e-125 453.4 366 66.4
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 2.2e-125 453.0 356 66.6
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 2.2e-125 453.0 324 71.3
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 2.2e-125 453.0 367 65.7
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 3.7e-125 452.2 366 66.1
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 4.9e-125 451.8 335 71.0
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 4.9e-125 451.8 364 67.3
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 6.4e-125 451.4 365 65.5
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 1.1e-124 450.7 363 66.7
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 1.1e-124 450.7 316 72.2
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 1.1e-124 450.7 361 67.3
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 1.4e-124 450.3 317 72.2
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 1.8e-124 449.9 337 70.0
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 2.4e-124 449.5 356 68.8
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 4.1e-124 448.7 303 73.9
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 5.4e-124 448.4 305 73.1
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 5.4e-124 448.4 303 72.9
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 7.0e-124 448.0 326 72.1
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 7.0e-124 448.0 357 67.8
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 9.2e-124 447.6 365 65.8
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 9.2e-124 447.6 290 77.2
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 2.7e-123 446.0 320 71.9
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 3.5e-123 445.7 360 68.1
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 3.5e-123 445.7 287 77.0
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 3.5e-123 445.7 368 65.8
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 4.6e-123 445.3 303 73.3
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 7.8e-123 444.5 303 72.9
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 1.0e-122 444.1 366 64.8
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 1.7e-122 443.4 328 68.9
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 2.3e-122 443.0 322 69.9
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 2.3e-122 443.0 306 72.9
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 3.9e-122 442.2 303 72.6
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 3.9e-122 442.2 303 72.6
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 3.9e-122 442.2 349 67.6
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 6.6e-122 441.4 303 73.3
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 1.1e-121 440.7 303 71.9
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 1.5e-121 440.3 371 64.2
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 3.3e-121 439.1 316 70.3
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 4.3e-121 438.7 322 69.6
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 1.6e-120 436.8 313 71.2
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 4.0e-119 432.2 377 60.7
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 5.8e-118 428.3 340 68.5
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 8.3e-117 424.5 307 69.7
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 1.4e-116 423.7 332 67.8
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 7.8e-115 417.9 300 72.7
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 1.7e-114 416.8 342 66.7
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 6.6e-114 414.8 264 79.9
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 2.5e-113 412.9 346 67.1
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 7.5e-110 401.4 360 61.1
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 2.2e-109 399.8 362 62.4
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 2.2e-109 399.8 419 57.8
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 1.9e-108 396.7 337 60.8
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 4.1e-108 395.6 305 67.9
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 1.1e-105 387.5 307 65.5
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 6.2e-104 381.7 473 48.2
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 6.4e-101 371.7 264 68.9
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 4.1e-100 369.0 580 41.6
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 2.7e-99 366.3 494 45.5
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 6.6e-98 361.7 273 70.3
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 9.0e-95 351.3 234 73.1
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 1.7e-93 347.1 232 72.0
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 2.2e-93 346.7 287 62.4
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 8.4e-93 344.7 271 67.9
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 6.0e-91 338.6 281 66.5
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 3.0e-90 336.3 278 59.7
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 1.9e-89 333.6 389 53.7
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 2.1e-88 330.1 301 57.1
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 1.1e-87 327.8 303 56.4
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 1.1e-87 327.8 275 66.9
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 4.9e-85 318.9 287 57.5
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 7.1e-76 288.5 184 76.1
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 2.4e-63 246.9 360 46.1
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 1.4e-60 237.7 170 67.6
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 3.2e-60 236.5 142 78.2
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 1.2e-59 234.6 211 64.9
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 1.0e-58 231.5 298 44.3
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 2.5e-57 226.9 186 62.4
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 4.1e-55 219.5 197 60.9
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 5.1e-50 202.6 299 40.5
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 6.7e-50 202.2 200 55.5
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 7.4e-49 198.7 193 51.3
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 9.1e-39 165.2 216 45.4
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 8.0e-35 152.1 101 78.2
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 3.0e-34 150.2 209 42.6
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 1.0e-29 135.2 104 62.5
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 1.7e-24 117.9 77 76.6
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 3.7e-24 116.7 75 77.3
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 1.8e-23 114.4 90 64.4
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 1.9e-20 104.4 131 55.7
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 6.8e-18 95.9 77 55.8
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 1.2e-17 95.1 108 51.9
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 6.3e-16 89.4 64 71.9
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 1.1e-15 88.6 169 33.1
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 7.0e-15 85.9 58 74.1
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 7.0e-15 85.9 58 74.1
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 7.0e-15 85.9 58 74.1
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 7.0e-15 85.9 58 74.1
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 7.0e-15 85.9 58 74.1
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 9.2e-15 85.5 58 74.1
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 2.7e-14 84.0 58 72.4
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 1.0e-13 82.0 55 69.1
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.3e-13 81.6 58 72.4
Psat2g069600 Pisum sativum HOM05D000263 ORTHO05D009363 2.7e-06 57.4 45 62.2
Sabra02G0024500 Salix brachista HOM05D001587 ORTHO05D037360 6.0e-06 56.2 38 68.4


User provided reference genes

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