Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G164700 Theobroma cacao HOM05D004176 ORTHO05D004845 1.9e-36 155.2 74 100.0
CiPaw.09G158600 Carya illinoinensis HOM05D004176 ORTHO05D004845 9.6e-20 99.8 63 73.0
CAN.G1181.22 Capsicum annuum HOM05D004176 ORTHO05D004845 6.2e-19 97.1 63 69.8
GSVIVG01003211001 Vitis vinifera HOM05D004176 ORTHO05D004845 8.1e-19 96.7 65 69.2
MD05G1324800 Malus domestica HOM05D004176 ORTHO05D004845 1.4e-18 95.9 62 69.4
PGSC0003DMG400022361 Solanum tuberosum HOM05D004176 ORTHO05D004845 1.8e-18 95.5 63 68.3
Dinv40500 Davidia involucrata HOM05D004176 ORTHO05D004845 2.4e-18 95.1 63 68.3
FAN21G0123 Fragaria x ananassa HOM05D004176 ORTHO05D004845 3.1e-18 94.7 62 69.4
FAN25G2335 Fragaria x ananassa HOM05D004176 ORTHO05D004845 3.1e-18 94.7 62 69.4
Prupe.4G036200 Prunus persica HOM05D004176 ORTHO05D004845 3.1e-18 94.7 62 71.0
Solyc02g079030.3 Solanum lycopersicum HOM05D004176 ORTHO05D004845 3.1e-18 94.7 63 68.3
arahy.Tifrunner.gnm1.ann1.YND711 Arachis hypogaea HOM05D004176 ORTHO05D004845 4.0e-18 94.4 66 69.7
FAN11G1228 Fragaria x ananassa HOM05D004176 ORTHO05D004845 4.0e-18 94.4 61 70.5
FAN16G2426 Fragaria x ananassa HOM05D004176 ORTHO05D004845 4.0e-18 94.4 61 70.5
TAR626G0914 Trochodendron aralioides HOM05D004176 ORTHO05D004845 4.0e-18 94.4 66 69.7
Lj6g0015878 Lotus japonicus HOM05D004176 ORTHO05D004845 5.3e-18 94.0 66 69.7
Carub.0007s1988 Capsella rubella HOM05D004176 ORTHO05D004845 6.9e-18 93.6 67 62.7
Glyma.15G067800 Glycine max HOM05D004176 ORTHO05D004845 6.9e-18 93.6 62 71.0
Peaxi162Scf00588g00910 Petunia axillaris HOM05D004176 ORTHO05D004845 6.9e-18 93.6 63 68.3
TPR.G31521 Trifolium pratense HOM05D004176 ORTHO05D004845 6.9e-18 93.6 66 68.2
Cpa.g.sc1170.1 Carica papaya HOM05D004176 ORTHO05D004845 9.0e-18 93.2 66 66.7
DCAR_024887 Daucus carota HOM05D004176 ORTHO05D004845 9.0e-18 93.2 66 68.2
arahy.Tifrunner.gnm1.ann1.IP4RNA Arachis hypogaea HOM05D004176 ORTHO05D004845 1.2e-17 92.8 66 68.2
CANSAT56G2709 Cannabis sativa HOM05D004176 ORTHO05D004845 1.2e-17 92.8 62 67.7
Ciclev10015071m.g Citrus clementina HOM05D004176 ORTHO05D004845 1.2e-17 92.8 63 66.7
COL.COLO4_31573 Corchorus olitorius HOM05D004176 ORTHO05D004845 1.2e-17 92.8 64 71.9
Haze_06566 Corylus avellana HOM05D004176 ORTHO05D004845 1.2e-17 92.8 63 68.3
Sopen02g023840 Solanum pennellii HOM05D004176 ORTHO05D004845 1.2e-17 92.8 63 65.1
AT4G21534 Arabidopsis thaliana HOM05D004176 ORTHO05D004845 1.5e-17 92.4 63 66.7
Ca_00256_v3 Cicer arietinum L. HOM05D004176 ORTHO05D004845 1.5e-17 92.4 63 68.3
FvH4_3g04090 Fragaria vesca HOM05D004176 ORTHO05D004845 1.5e-17 92.4 61 68.9
Phvul.006G191800 Phaseolus vulgaris HOM05D004176 ORTHO05D004845 1.5e-17 92.4 66 66.7
VMungo0540G2164 Vigna mungo HOM05D004176 ORTHO05D004845 1.5e-17 92.4 66 66.7
CSS0038663 Camellia sinensis var. sinensis HOM05D004176 ORTHO05D004845 2.0e-17 92.0 62 71.0
MD10G1302700 Malus domestica HOM05D004176 ORTHO05D004845 2.6e-17 91.7 62 66.1
Manes.16G021200 Manihot esculenta HOM05D004176 ORTHO05D004845 2.6e-17 91.7 62 66.1
Sp7g19650 Schrenkiella parvula HOM05D004176 ORTHO05D004845 2.6e-17 91.7 63 66.7
AL7G32490 Arabidopsis lyrata HOM05D004176 ORTHO05D004845 3.4e-17 91.3 63 66.7
Duzib235G1328 Durio zibethinus HOM05D004176 ORTHO05D004845 3.4e-17 91.3 63 71.4
Psat1g208320 Pisum sativum HOM05D004176 ORTHO05D004845 3.4e-17 91.3 62 69.4
TWI63G1567 Tripterygium wilfordii HOM05D004176 ORTHO05D004845 3.4e-17 91.3 63 66.7
QL05p081898 Quercus lobata HOM05D004176 ORTHO05D004845 4.5e-17 90.9 63 66.7
A08p15120 Brassica napus HOM05D004176 ORTHO05D004845 7.6e-17 90.1 63 66.7
BraA08t33492Z Brassica rapa HOM05D004176 ORTHO05D004845 7.6e-17 90.1 63 66.7
RcHm_v2.0_Chr5g0007951 Rosa chinensis HOM05D004176 ORTHO05D004845 7.6e-17 90.1 62 62.9
BcaB03g11691 Brassica carinata HOM05D004176 ORTHO05D004845 9.9e-17 89.7 63 66.7
Dinv39813 Davidia involucrata HOM05D004176 ORTHO05D004845 9.9e-17 89.7 57 70.2
Glyma.08G058400 Glycine max HOM05D004176 ORTHO05D004845 9.9e-17 89.7 66 65.2
Gohir.D10G021400 Gossypium hirsutum HOM05D004176 ORTHO05D004845 9.9e-17 89.7 63 69.8
Gorai.011G022500 Gossypium raimondii HOM05D004176 ORTHO05D004845 9.9e-17 89.7 63 69.8
Lj1A1212T59 Lonicera japonica HOM05D004176 ORTHO05D004845 9.9e-17 89.7 66 66.7
PGR042G0018 Punica granatum HOM05D004176 ORTHO05D004845 9.9e-17 89.7 63 63.5
QL03p053022 Quercus lobata HOM05D004176 ORTHO05D004845 9.9e-17 89.7 63 66.7
CARHR228200 Cardamine hirsuta HOM05D004176 ORTHO05D004845 1.3e-16 89.4 63 65.1
Cc02_g12520 Coffea canephora HOM05D004176 ORTHO05D004845 1.3e-16 89.4 66 63.6
Medtr2g011820 Medicago truncatula HOM05D004176 ORTHO05D004845 1.3e-16 89.4 62 67.7
Thecc.06G198200 Theobroma cacao HOM05D004176 ORTHO05D004845 1.3e-16 89.4 56 71.4
Thhalv10025052m.g Eutrema salsugineum HOM05D004176 ORTHO05D004845 1.7e-16 89.0 63 63.5
Lalb_Chr20g0122261 Lupinus albus HOM05D004176 ORTHO05D004845 1.7e-16 89.0 66 65.2
Sp7g19660 Schrenkiella parvula HOM05D004176 ORTHO05D004845 1.7e-16 89.0 63 63.5
Lalb_Chr18g0059921 Lupinus albus HOM05D004176 ORTHO05D004845 2.2e-16 88.6 66 66.7
Phvul.002G222800 Phaseolus vulgaris HOM05D004176 ORTHO05D004845 2.2e-16 88.6 63 65.1
Actinidia05580 Actinidia chinensis HOM05D004176 ORTHO05D004845 3.8e-16 87.8 63 65.1
Nitab4.5_0003465g0060 Nicotiana tabacum HOM05D004176 ORTHO05D004845 3.8e-16 87.8 61 65.6
Nitab4.5_0007109g0030 Nicotiana tabacum HOM05D004176 ORTHO05D004845 3.8e-16 87.8 61 65.6
TAR624G0327 Trochodendron aralioides HOM05D004176 ORTHO05D004845 3.8e-16 87.8 63 66.7
AL7G32480 Arabidopsis lyrata HOM05D004176 ORTHO05D004845 4.9e-16 87.4 63 61.9
AT4G21540 Arabidopsis thaliana HOM05D004176 ORTHO05D004845 4.9e-16 87.4 63 61.9
Gorai.009G173200 Gossypium raimondii HOM05D004176 ORTHO05D004845 4.9e-16 87.4 63 66.7
SGA_v2.0_scaffold1019G53794 Striga asiatica HOM05D004176 ORTHO05D004845 4.9e-16 87.4 67 56.7
CARHR228210 Cardamine hirsuta HOM05D004176 ORTHO05D004845 6.4e-16 87.0 63 61.9
Eucgr.E03468 Eucalyptus grandis HOM05D004176 ORTHO05D004845 6.4e-16 87.0 66 60.6
Gohir.A05G165100 Gossypium hirsutum HOM05D004176 ORTHO05D004845 6.4e-16 87.0 63 66.7
Lsat_1_v5_gn_4_57180 Lactuca sativa HOM05D004176 ORTHO05D004845 6.4e-16 87.0 64 67.2
Oeu053937.2 Olea europaea HOM05D004176 ORTHO05D004845 6.4e-16 87.0 66 65.2
RcHm_v2.0_Chr5g0006561 Rosa chinensis HOM05D004176 ORTHO05D004845 6.4e-16 87.0 62 62.9
Sabra11G0030100 Salix brachista HOM05D004176 ORTHO05D004845 6.4e-16 87.0 62 66.1
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 8.4e-16 86.7 61 65.6
Gohir.A10G020600 Gossypium hirsutum HOM05D004176 ORTHO05D004845 8.4e-16 86.7 63 68.3
Lalb_Chr05g0218191 Lupinus albus HOM05D004176 ORTHO05D004845 8.4e-16 86.7 62 64.5
MSTRG.15928 Avicennia marina HOM05D004176 ORTHO05D004845 1.4e-15 85.9 63 61.9
Potri.011G043500 Populus trichocarpa HOM05D004176 ORTHO05D004845 1.4e-15 85.9 62 64.5
Carub.0007s1987 Capsella rubella HOM05D004176 ORTHO05D004845 1.9e-15 85.5 63 60.3
Nitab4.5_0003574g0080 Nicotiana tabacum HOM05D004176 ORTHO05D004845 1.9e-15 85.5 63 61.9
Peaxi162Scf00137g00128 Petunia axillaris HOM05D004176 ORTHO05D004845 1.9e-15 85.5 62 61.3
BcaC01g00694 Brassica carinata HOM05D004176 ORTHO05D004845 2.4e-15 85.1 63 63.5
BolC3t20608H Brassica oleracea HOM05D004176 ORTHO05D004845 2.4e-15 85.1 63 63.5
Thhalv10025046m.g Eutrema salsugineum HOM05D004176 ORTHO05D004845 2.4e-15 85.1 63 61.9
Gohir.D05G168100 Gossypium hirsutum HOM05D004176 ORTHO05D004845 2.4e-15 85.1 63 65.1
Sc05g0008050 Simmondsia chinensis HOM05D004176 ORTHO05D004845 2.4e-15 85.1 61 67.2
Sc05g0010010 Simmondsia chinensis HOM05D004176 ORTHO05D004845 2.4e-15 85.1 61 67.2
THA.LOC104806277 Tarenaya hassleriana HOM05D004176 ORTHO05D004845 2.4e-15 85.1 63 63.5
Ah.14g088950 Amaranthus hybridus HOM05D004176 ORTHO05D004845 3.2e-15 84.7 61 63.9
A03p52810 Brassica napus HOM05D004176 ORTHO05D004845 3.2e-15 84.7 63 60.3
BraA03t14357Z Brassica rapa HOM05D004176 ORTHO05D004845 3.2e-15 84.7 63 60.3
Migut.M01205 Erythranthe guttata HOM05D004176 ORTHO05D004845 3.2e-15 84.7 63 63.5
VMungo0251G0350 Vigna mungo HOM05D004176 ORTHO05D004845 3.2e-15 84.7 66 65.2
Aqoxy1G02747 Aquilegia oxysepala HOM05D004176 ORTHO05D004845 4.2e-15 84.3 62 66.1
C03p83270 Brassica napus HOM05D004176 ORTHO05D004845 4.2e-15 84.3 63 63.5
C07p51250 Brassica napus HOM05D004176 ORTHO05D004845 4.2e-15 84.3 63 60.3
vmacro03824 Vaccinium macrocarpon HOM05D004176 ORTHO05D004845 4.2e-15 84.3 66 62.1
Eucgr.E03472 Eucalyptus grandis HOM05D004176 ORTHO05D004845 5.4e-15 84.0 66 59.1
BolC7t45624H Brassica oleracea HOM05D004176 ORTHO05D004845 1.2e-14 82.8 63 58.7
AUR62014726 Chenopodium quinoa HOM05D004176 ORTHO05D004845 1.2e-14 82.8 61 60.7
AUR62016908 Chenopodium quinoa HOM05D004176 ORTHO05D004845 1.2e-14 82.8 61 60.7
Nn1g06749 Nelumbo nucifera HOM05D004176 ORTHO05D004845 1.6e-14 82.4 64 64.1
BcaC06g30667 Brassica carinata HOM05D004176 ORTHO05D004845 2.1e-14 82.0 63 58.7
Solyc03g006630.3 Solanum lycopersicum HOM05D004176 ORTHO05D004845 2.1e-14 82.0 62 61.3
Sopen03g002640 Solanum pennellii HOM05D004176 ORTHO05D004845 2.1e-14 82.0 62 61.3
PGSC0003DMG400005056 Solanum tuberosum HOM05D004176 ORTHO05D004845 2.1e-14 82.0 62 61.3
MELO3C007311.2 Cucumis melo HOM05D004176 ORTHO05D004845 3.5e-14 81.3 67 56.7
Hund23626 Selenicereus undatus HOM05D004176 ORTHO05D004845 4.6e-14 80.9 62 59.7
DCAR_028122 Daucus carota HOM05D004176 ORTHO05D004845 6.0e-14 80.5 57 64.9
PSO675G5031 Papaver somniferum HOM05D004176 ORTHO05D004845 6.0e-14 80.5 63 61.9
CAN.G289.28 Capsicum annuum HOM05D004176 ORTHO05D004845 7.9e-14 80.1 62 59.7
ClCG00G002960 Citrullus lanatus HOM05D004176 ORTHO05D004845 7.9e-14 80.1 67 56.7
ClCG01G022660 Citrullus lanatus HOM05D004176 ORTHO05D004845 7.9e-14 80.1 67 56.7
HanXRQChr16g0517801 Helianthus annuus HOM05D004176 ORTHO05D004845 7.9e-14 80.1 62 62.9
ECA234G4776 Erigeron canadensis HOM05D004176 ORTHO05D004845 1.0e-13 79.7 61 62.3
ECA248G3644 Erigeron canadensis HOM05D004176 ORTHO05D004845 1.3e-13 79.3 62 61.3
MBI18_g07595_MAGBIO Magnolia biondii HOM05D004176 ORTHO05D004845 2.3e-13 78.6 63 60.3
HanXRQChr01g0005541 Helianthus annuus HOM05D004176 ORTHO05D004845 3.0e-13 78.2 66 59.1
EL10Ac8g20615 Beta vulgaris HOM05D004176 ORTHO05D004845 5.1e-13 77.4 61 57.4
MBI16_g27830_MAGBIO Magnolia biondii HOM05D004176 ORTHO05D008326 5.1e-13 77.4 66 56.1
CsaV3_6G049850 Cucumis sativus L. HOM05D004176 ORTHO05D004845 6.7e-13 77.0 67 53.7
ATR0693G103 Amborella trichopoda HOM05D004176 ORTHO05D004845 1.9e-12 75.5 64 56.2
HPP92_000922 Vanilla planifolia HOM05D004176 ORTHO05D004845 3.1e-10 68.2 64 56.2
HPP92_001808 Vanilla planifolia HOM05D004176 ORTHO05D004845 3.1e-10 68.2 65 53.8
HPP92_014068 Vanilla planifolia HOM05D001107 ORTHO05D004845 3.1e-10 68.2 65 53.8
Nn1g03915 Nelumbo nucifera HOM05D004176 ORTHO05D004845 1.3e-08 62.8 57 56.1
SEGI_01037 Sequoiadendron giganteum HOM05D004176 ORTHO05D004845 1.3e-08 62.8 63 49.2
CDE05G1825 Ceratophyllum demersum HOM05D004176 ORTHO05D004845 3.8e-08 61.2 64 48.4
Os01g0782200 Oryza sativa ssp. japonica HOM05D004176 ORTHO05D004845 1.4e-07 59.3 65 47.7
Zm00001eb324260 Zea mays HOM05D004176 ORTHO05D004845 4.6e-06 54.3 66 48.5


User provided reference genes

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