Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 2.2e-70 268.9 139 100.0
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 6.5e-62 240.7 140 89.3
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.5e-61 238.8 140 88.6
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.5e-61 238.8 140 88.6
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 1.4e-59 233.0 139 87.8
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 2.0e-58 229.2 141 85.1
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 2.6e-58 228.8 139 85.6
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 7.0e-56 220.7 141 83.0
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 7.7e-55 217.2 138 81.2
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 7.7e-55 217.2 141 85.1
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 1.3e-54 216.5 140 81.4
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 2.3e-54 215.7 140 81.4
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 2.9e-54 215.3 141 81.6
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 8.6e-54 213.8 141 80.9
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 8.6e-54 213.8 141 83.0
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 1.9e-53 212.6 144 80.6
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 2.5e-53 212.2 140 79.3
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 2.5e-53 212.2 141 80.1
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 5.6e-53 211.1 141 82.3
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 9.5e-53 210.3 141 82.3
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 1.6e-52 209.5 141 82.3
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 2.8e-52 208.8 141 78.7
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 2.8e-52 208.8 142 78.9
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.6e-52 208.4 140 78.6
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 6.1e-52 207.6 140 78.6
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 1.0e-51 206.8 141 78.7
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 1.0e-51 206.8 140 80.7
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.0e-51 206.8 139 77.0
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 1.4e-51 206.5 141 77.3
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 1.8e-51 206.1 143 79.7
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.8e-51 206.1 144 77.8
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.8e-51 206.1 141 78.7
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 2.3e-51 205.7 140 78.6
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 2.3e-51 205.7 141 79.4
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 3.0e-51 205.3 142 77.5
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 4.0e-51 204.9 141 80.1
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 4.0e-51 204.9 140 81.4
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 5.2e-51 204.5 137 80.3
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 5.2e-51 204.5 139 76.3
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 5.2e-51 204.5 139 76.3
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 8.9e-51 203.8 141 78.0
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 8.9e-51 203.8 141 78.0
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 1.5e-50 203.0 141 76.6
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 2.0e-50 202.6 141 78.7
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 2.6e-50 202.2 136 80.1
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 78.7
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 78.7
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 5.7e-50 201.1 141 76.6
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 5.7e-50 201.1 141 76.6
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 5.7e-50 201.1 141 76.6
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 7.5e-50 200.7 140 77.9
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 9.8e-50 200.3 141 78.7
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 1.3e-49 199.9 141 75.9
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.3e-49 199.9 141 75.9
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 1.7e-49 199.5 142 76.8
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 1.7e-49 199.5 142 76.8
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 1.7e-49 199.5 142 76.8
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 1.7e-49 199.5 141 76.6
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.7e-49 199.5 139 79.1
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.9e-49 198.7 142 76.1
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 6.4e-49 197.6 141 75.9
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 6.4e-49 197.6 140 77.9
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 8.3e-49 197.2 140 78.6
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 8.3e-49 197.2 140 75.0
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 1.1e-48 196.8 142 74.6
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 1.1e-48 196.8 140 77.1
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 1.4e-48 196.4 141 75.2
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 1.4e-48 196.4 141 74.5
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 1.4e-48 196.4 138 77.5
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 1.4e-48 196.4 142 74.6
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 1.8e-48 196.1 142 75.4
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 1.8e-48 196.1 142 75.4
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.4e-48 195.7 141 76.6
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 3.2e-48 195.3 142 75.4
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 3.2e-48 195.3 142 75.4
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 4.1e-48 194.9 142 73.9
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 4.1e-48 194.9 136 77.9
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 7.0e-48 194.1 142 76.1
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 9.2e-48 193.7 141 75.9
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 9.2e-48 193.7 141 75.2
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 9.2e-48 193.7 140 72.1
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 1.2e-47 193.4 141 74.5
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 1.2e-47 193.4 141 74.5
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 1.2e-47 193.4 141 74.5
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 1.2e-47 193.4 141 74.5
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 1.2e-47 193.4 141 74.5
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.6e-47 193.0 141 73.0
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 2.7e-47 192.2 141 76.6
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 4.6e-47 191.4 142 73.9
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 5.9e-47 191.0 141 75.2
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 7.8e-47 190.7 141 73.8
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.0e-46 190.3 142 72.5
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 1.3e-46 189.9 140 72.1
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 1.3e-46 189.9 142 74.6
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 1.7e-46 189.5 138 76.1
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.3e-46 189.1 141 74.5
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 2.3e-46 189.1 141 75.2
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 3.9e-46 188.3 157 70.7
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 3.9e-46 188.3 138 75.4
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 6.6e-46 187.6 141 75.9
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 6.6e-46 187.6 141 75.9
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 8.6e-46 187.2 142 71.8
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 8.6e-46 187.2 141 75.2
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 8.6e-46 187.2 132 73.5
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.9e-45 186.0 143 73.4
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 1.9e-45 186.0 141 71.6
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 3.3e-45 185.3 142 74.6
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 3.3e-45 185.3 144 70.8
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 4.3e-45 184.9 133 74.4
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 5.6e-45 184.5 141 72.3
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 5.6e-45 184.5 141 72.3
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 9.5e-45 183.7 141 72.3
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 9.5e-45 183.7 140 70.7
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.6e-44 183.0 141 73.0
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 3.6e-44 181.8 140 72.9
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 4.7e-44 181.4 140 70.7
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 6.2e-44 181.0 139 67.6
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 8.0e-44 180.6 141 70.9
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 1.0e-43 180.3 139 69.1
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 1.8e-43 179.5 142 70.4
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 4.0e-43 178.3 139 69.8
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 4.0e-43 178.3 136 72.1
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 1.5e-42 176.4 142 71.1
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 3.4e-42 175.3 136 69.1
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 3.4e-42 175.3 139 66.9
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 5.8e-42 174.5 139 68.3
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.7e-41 172.9 136 67.6
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 4.9e-41 171.4 139 69.8
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 8.3e-41 170.6 139 70.5
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 1.9e-40 169.5 140 65.0
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 1.9e-40 169.5 140 65.0
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 9.2e-40 167.2 140 69.3
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.0e-39 166.0 139 64.0
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.7e-39 165.6 132 66.7
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 4.6e-39 164.9 137 65.7
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 3.0e-38 162.2 114 76.3
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 3.0e-38 162.2 91 87.9
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 1.1e-37 160.2 88 89.8
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 3.6e-36 155.2 159 62.3
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 4.7e-36 154.8 154 60.4
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 1.1e-35 153.7 141 59.6
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.8e-35 152.9 110 74.5
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 8.9e-35 150.6 138 60.9
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 8.9e-35 150.6 142 61.3
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 1.7e-33 146.4 136 57.4
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 6.4e-33 144.4 143 57.3
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 3.3e-29 132.1 139 52.5
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.2e-28 130.2 141 59.6
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.2e-28 130.2 138 53.6
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 3.6e-28 128.6 139 60.4
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.2e-26 123.6 131 54.2
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.2e-26 123.6 122 54.9
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 5.8e-26 121.3 134 54.5
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 5.8e-26 121.3 135 51.1
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 1.3e-25 120.2 91 78.0
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 1.7e-25 119.8 90 77.8
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 2.2e-25 119.4 139 50.4
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 3.9e-22 108.6 88 71.6
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 4.3e-21 105.1 53 90.6
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 2.1e-20 102.8 140 49.3
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 3.1e-19 99.0 88 53.4
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 2.6e-18 95.9 66 65.2
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 3.9e-14 82.0 80 53.8
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 4.3e-13 78.6 81 61.7
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 5.3e-11 71.6 74 60.8
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 6.6e-06 54.7 134 38.8


User provided reference genes

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