Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 4.4e-294 1013.8 496 100.0
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 1.9e-276 955.3 489 94.5
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 9.2e-276 953.0 496 93.5
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 9.2e-276 953.0 496 92.9
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.3e-274 949.1 496 92.5
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.3e-274 949.1 496 92.5
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 6.2e-272 940.3 496 91.5
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.8e-271 938.7 496 91.5
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.6e-270 934.9 496 91.3
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 2.5e-265 918.3 496 89.7
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 9.6e-265 916.4 496 88.9
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 1.5e-262 909.1 496 88.9
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 3.4e-262 907.9 496 88.1
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 8.4e-261 903.3 496 88.1
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 3.2e-260 901.4 493 87.0
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 1.0e-258 896.3 495 86.7
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 9.6e-257 889.8 496 86.9
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.3e-256 889.4 496 86.1
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 4.8e-256 887.5 496 87.1
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 6.2e-256 887.1 496 86.3
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 1.1e-255 886.3 494 86.0
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.5e-254 882.5 496 86.9
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 2.0e-254 882.1 493 86.8
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 2.6e-254 881.7 496 85.7
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 7.6e-254 880.2 493 86.4
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 2.9e-253 878.2 496 84.1
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 4.9e-253 877.5 493 85.8
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.4e-252 875.9 494 86.2
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 1.9e-252 875.5 497 85.7
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 4.2e-252 874.4 494 86.2
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 7.1e-252 873.6 496 85.5
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 1.2e-251 872.8 526 81.9
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 3.0e-250 868.2 496 84.7
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.5e-249 865.1 492 85.2
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 3.3e-249 864.8 493 85.0
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.4e-249 863.6 496 84.7
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 1.3e-248 862.8 496 84.7
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 1.3e-248 862.8 495 85.9
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 6.2e-248 860.5 495 85.1
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 8.1e-248 860.1 492 84.3
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 1.4e-247 859.4 499 83.0
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 1.4e-247 859.4 492 84.6
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.8e-247 859.0 493 84.2
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 1.8e-247 859.0 494 84.4
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.8e-247 859.0 532 80.6
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.1e-247 858.2 496 84.3
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 5.3e-247 857.4 495 84.4
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 6.9e-247 857.1 495 84.6
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 6.9e-247 857.1 496 82.9
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 2.0e-246 855.5 494 83.4
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 2.6e-246 855.1 487 85.0
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 2.6e-246 855.1 496 84.3
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 2.6e-246 855.1 492 84.6
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 3.4e-246 854.7 496 82.9
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.6e-246 853.6 496 83.7
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 1.3e-245 852.8 494 84.4
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 1.7e-245 852.4 494 83.8
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.7e-245 852.4 493 83.4
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 2.2e-245 852.0 491 83.9
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 2.2e-245 852.0 495 84.2
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 4.9e-245 850.9 489 84.5
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 4.9e-245 850.9 480 85.0
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 6.4e-245 850.5 494 83.0
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 6.4e-245 850.5 495 83.4
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 6.4e-245 850.5 496 84.9
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 4.2e-244 847.8 477 85.7
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 4.2e-244 847.8 498 82.7
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 5.5e-244 847.4 495 84.0
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 5.5e-244 847.4 496 83.7
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.5e-244 847.4 496 83.7
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 1.2e-243 846.3 493 83.2
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 1.6e-243 845.9 494 83.2
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 2.1e-243 845.5 493 84.0
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 2.7e-243 845.1 502 83.3
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 2.7e-243 845.1 492 83.5
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 4.6e-243 844.3 507 81.7
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 6.0e-243 844.0 493 83.8
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 6.0e-243 844.0 505 82.0
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 1.0e-242 843.2 493 82.6
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 3.9e-242 841.3 490 83.5
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 5.1e-242 840.9 491 84.1
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 6.7e-242 840.5 488 84.4
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 6.7e-242 840.5 499 82.8
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 1.9e-241 839.0 494 82.6
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 3.3e-241 838.2 491 83.9
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 4.3e-241 837.8 490 83.7
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 4.3e-241 837.8 493 82.8
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 4.3e-241 837.8 494 82.8
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 3.7e-240 834.7 490 83.5
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 3.7e-240 834.7 492 82.1
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 6.2e-240 833.9 498 82.1
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 8.1e-240 833.6 493 82.2
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 1.2e-238 829.7 498 80.9
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 1.0e-237 826.6 495 81.8
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.7e-237 825.9 495 82.2
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.4e-236 822.8 497 80.5
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 2.5e-236 822.0 493 80.9
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 2.1e-235 818.9 494 80.8
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.7e-229 799.3 493 79.5
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 4.6e-227 791.2 435 87.6
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 1.3e-226 789.6 486 79.0
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 3.3e-225 785.0 442 85.3
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.4e-223 779.6 488 77.5
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 6.9e-223 777.3 492 77.0
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 7.7e-222 773.9 444 85.1
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 2.1e-219 765.8 442 83.5
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 6.7e-218 760.8 513 74.3
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 1.7e-216 756.1 447 82.3
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 4.1e-215 751.5 501 74.3
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.6e-211 739.6 444 83.6
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 2.6e-206 722.2 492 71.3
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 2.6e-206 722.2 440 80.9
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 5.2e-202 708.0 389 88.9
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 7.0e-199 697.6 486 71.6
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 1.7e-197 693.0 488 69.5
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 6.8e-194 681.0 493 70.6
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 1.3e-192 676.8 380 86.1
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 5.4e-191 671.4 497 69.4
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 2.7e-187 659.1 407 78.1
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 8.0e-187 657.5 471 71.5
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 4.1e-183 645.2 501 68.1
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.8e-181 638.6 386 81.9
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 8.3e-176 620.9 507 61.5
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 3.2e-175 619.0 391 79.5
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 3.1e-170 602.4 348 83.6
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 2.2e-168 596.3 382 77.5
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 2.2e-168 596.3 461 68.5
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 8.6e-149 531.2 528 52.1
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.0e-138 495.7 266 90.6
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 6.9e-122 441.8 477 50.7
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 5.8e-121 438.7 238 89.1
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 1.1e-111 407.9 238 81.5
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.2e-111 406.0 228 86.8
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 6.1e-110 402.1 301 68.4
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 8.7e-109 398.3 253 75.9
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.8e-107 393.3 481 47.6
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 3.8e-104 382.9 434 50.5
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.1e-103 381.3 238 75.6
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 2.2e-99 367.1 303 68.0
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.7e-94 350.1 313 60.4
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.6e-94 349.7 236 73.3
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 1.6e-89 334.3 236 69.9
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 9.4e-87 325.1 254 69.7
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 4.3e-63 246.5 160 73.8
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 4.4e-60 236.5 260 53.1
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 1.2e-57 228.4 150 68.7
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 4.7e-54 216.5 299 46.2
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 8.6e-48 195.7 103 89.3
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.5e-47 194.9 146 64.4
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 2.5e-47 194.1 99 90.9
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 7.5e-44 182.6 151 66.9
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 2.2e-43 181.0 104 81.7
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 2.2e-43 181.0 138 64.5
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 5.2e-37 159.8 130 60.8
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 3.5e-33 147.1 161 49.7
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.0e-32 145.6 75 92.0
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 8.7e-32 142.5 79 87.3
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 7.6e-28 129.4 85 75.3
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 4.2e-18 97.1 93 55.9
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 2.1e-17 94.7 73 65.8
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 2.5e-15 87.8 61 75.4
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 2.4e-10 71.2 51 68.6
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 3.2e-10 70.9 36 86.1
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 7.9e-09 66.2 45 68.9
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 1.1e-07 62.4 30 86.7
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 5.6e-07 60.1 38 78.9


User provided reference genes

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