Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G036900 Theobroma cacao HOM05D006187 ORTHO05D007621 6.7e-119 430.6 209 100.0
COL.COLO4_09662 Corchorus olitorius HOM05D006187 ORTHO05D007621 8.5e-114 413.7 209 93.8
Gohir.D01G066500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 4.4e-110 401.4 209 91.4
Gorai.002G088500 Gossypium raimondii HOM05D006187 ORTHO05D007621 6.3e-109 397.5 209 90.4
Gohir.A01G079500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 3.1e-108 395.2 209 90.0
Manes.15G071900 Manihot esculenta HOM05D006187 ORTHO05D007621 1.2e-107 393.3 209 89.5
Duzib170G0579 Durio zibethinus HOM05D006187 ORTHO05D007621 1.5e-107 392.9 209 90.0
TAR626G1058 Trochodendron aralioides HOM05D006187 ORTHO05D007621 3.5e-107 391.7 209 88.5
arahy.Tifrunner.gnm1.ann1.KHU2SV Arachis hypogaea HOM05D006187 ORTHO05D007621 7.7e-107 390.6 209 88.5
arahy.Tifrunner.gnm1.ann1.YIAG1Z Arachis hypogaea HOM05D006187 ORTHO05D007621 7.7e-107 390.6 209 88.5
Haze_09689 Corylus avellana HOM05D006187 ORTHO05D007621 7.7e-107 390.6 209 88.5
VMungo0647G0583 Vigna mungo HOM05D006187 ORTHO05D007621 1.0e-106 390.2 209 89.0
Nn1g03532 Nelumbo nucifera HOM05D006187 ORTHO05D007621 1.7e-106 389.4 209 87.6
Prupe.4G212700 Prunus persica HOM05D006187 ORTHO05D007621 2.9e-106 388.7 209 88.5
Potri.001G435500 Populus trichocarpa HOM05D006187 ORTHO05D007621 3.8e-106 388.3 209 87.6
MD11G1218600 Malus domestica HOM05D006187 ORTHO05D007621 1.4e-105 386.3 209 88.5
RhsimUnG0250600 Rhododendron simsii HOM05D006187 ORTHO05D007621 1.4e-105 386.3 209 87.1
CAN.G337.132 Capsicum annuum HOM05D006187 ORTHO05D007621 2.5e-105 385.6 209 88.5
Cc05_g13690 Coffea canephora HOM05D006187 ORTHO05D007621 2.5e-105 385.6 209 88.0
Phvul.008G266900 Phaseolus vulgaris HOM05D006187 ORTHO05D007621 2.5e-105 385.6 209 87.6
Ciclev10009486m.g Citrus clementina HOM05D006187 ORTHO05D007621 3.2e-105 385.2 209 87.6
LjContig00272g0005891 Lotus japonicus HOM05D006187 ORTHO05D007621 3.2e-105 385.2 209 86.1
RcHm_v2.0_Chr5g0039431 Rosa chinensis HOM05D006187 ORTHO05D007621 3.2e-105 385.2 209 87.6
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 4.2e-105 384.8 209 86.6
Potri.011G139500 Populus trichocarpa HOM05D006187 ORTHO05D007621 4.2e-105 384.8 209 87.1
FvH4_3g22670 Fragaria vesca HOM05D006187 ORTHO05D007621 5.5e-105 384.4 209 88.0
Cfa020345 Carpinus fangiana HOM05D006187 ORTHO05D007621 1.2e-104 383.3 209 86.6
DCAR_022562 Daucus carota HOM05D006187 ORTHO05D007621 1.2e-104 383.3 209 86.1
Dinv40753 Davidia involucrata HOM05D006187 ORTHO05D007621 1.2e-104 383.3 209 87.6
PGR083G2749 Punica granatum HOM05D006187 ORTHO05D007621 1.6e-104 382.9 209 87.1
TWI39G1048 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 1.6e-104 382.9 209 86.6
CiPaw.11G189300 Carya illinoinensis HOM05D006187 ORTHO05D007621 2.1e-104 382.5 209 89.0
Oeu005532.1 Olea europaea HOM05D006187 ORTHO05D007621 2.1e-104 382.5 209 87.6
THA.LOC104816937 Tarenaya hassleriana HOM05D006187 ORTHO05D007621 4.7e-104 381.3 209 86.1
Lalb_Chr10g0106971 Lupinus albus HOM05D006187 ORTHO05D007621 1.0e-103 380.2 209 85.6
PSO210G0259 Papaver somniferum HOM05D006187 ORTHO05D007621 1.8e-103 379.4 209 84.7
Peaxi162Scf00964g00021 Petunia axillaris HOM05D006187 ORTHO05D007621 2.3e-103 379.0 209 87.1
Ca_06320_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 3.0e-103 378.6 209 86.1
Ca_30809_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 3.0e-103 378.6 209 86.1
Eucgr.F00764 Eucalyptus grandis HOM05D006187 ORTHO05D007621 3.0e-103 378.6 209 85.6
MSTRG.26280 Avicennia marina HOM05D006187 ORTHO05D007621 5.2e-103 377.9 209 86.1
CANSAT11G0252 Cannabis sativa HOM05D006187 ORTHO05D007621 8.8e-103 377.1 209 84.7
Sed0017183 Sechium edule HOM05D006187 ORTHO05D007621 8.8e-103 377.1 209 84.7
PSO832G1277 Papaver somniferum HOM05D006187 ORTHO05D007621 1.5e-102 376.3 209 83.7
PGSC0003DMG400022319 Solanum tuberosum HOM05D006187 ORTHO05D007621 2.6e-102 375.6 209 86.1
ECA246G0646 Erigeron canadensis HOM05D006187 ORTHO05D007621 3.3e-102 375.2 209 85.2
Solyc07g064590.3 Solanum lycopersicum HOM05D006187 ORTHO05D007621 3.3e-102 375.2 209 85.6
Aa31LG10G3660 Aethionema arabicum HOM05D006187 ORTHO05D007621 4.4e-102 374.8 209 85.6
Ah.06g186030 Amaranthus hybridus HOM05D006187 ORTHO05D007621 5.7e-102 374.4 209 82.8
CsaV3_7G021800 Cucumis sativus L. HOM05D006187 ORTHO05D007621 5.7e-102 374.4 209 84.7
Psat2g010920 Pisum sativum HOM05D006187 ORTHO05D007621 5.7e-102 374.4 209 84.2
TPR.G1184 Trifolium pratense HOM05D006187 ORTHO05D007621 7.4e-102 374.0 209 84.2
AUR62020447 Chenopodium quinoa HOM05D006187 ORTHO05D007621 9.7e-102 373.6 209 84.7
FAN16G3112 Fragaria x ananassa HOM05D006187 ORTHO05D007621 9.7e-102 373.6 221 82.8
Sopen07g032780 Solanum pennellii HOM05D006187 ORTHO05D007621 9.7e-102 373.6 209 85.2
A06p02950 Brassica napus HOM05D006187 ORTHO05D007621 1.7e-101 372.9 209 83.7
Aqoxy1G03401 Aquilegia oxysepala HOM05D006187 ORTHO05D007621 2.2e-101 372.5 209 84.2
CiPaw.12G129700 Carya illinoinensis HOM05D006187 ORTHO05D007621 2.8e-101 372.1 209 85.6
C06p05930 Brassica napus HOM05D006187 ORTHO05D007621 1.1e-100 370.2 209 83.7
CSS0049447 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 1.1e-100 370.2 209 84.7
CARHR040720 Cardamine hirsuta HOM05D006187 ORTHO05D007621 1.4e-100 369.8 209 83.7
Carub.0001s3971 Capsella rubella HOM05D006187 ORTHO05D007621 3.1e-100 368.6 209 83.7
GSVIVG01037647001 Vitis vinifera HOM05D006187 ORTHO05D007621 3.1e-100 368.6 209 82.8
AT1G50670 Arabidopsis thaliana HOM05D006187 ORTHO05D007621 4.1e-100 368.2 209 83.3
BcaB07g33507 Brassica carinata HOM05D006187 ORTHO05D007621 5.3e-100 367.9 209 83.3
CSS0042680 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 5.3e-100 367.9 209 83.7
FAN11G0395 Fragaria x ananassa HOM05D006187 ORTHO05D007621 5.3e-100 367.9 230 80.0
AL1G58340 Arabidopsis lyrata HOM05D006187 ORTHO05D007621 9.1e-100 367.1 209 82.8
AUR62015764 Chenopodium quinoa HOM05D006187 ORTHO05D007621 9.1e-100 367.1 209 82.8
Sp1g37520 Schrenkiella parvula HOM05D006187 ORTHO05D007621 9.1e-100 367.1 209 82.8
BraA06t23501Z Brassica rapa HOM05D006187 ORTHO05D007621 1.2e-99 366.7 210 83.3
BcaC08g43245 Brassica carinata HOM05D006187 ORTHO05D007621 1.6e-99 366.3 209 83.3
EL10Ac4g07806 Beta vulgaris HOM05D006187 ORTHO05D007621 2.0e-99 365.9 209 82.8
FAN25G1478 Fragaria x ananassa HOM05D006187 ORTHO05D007621 2.6e-99 365.5 230 79.1
Migut.K00331 Erythranthe guttata HOM05D006187 ORTHO05D007621 4.5e-99 364.8 208 82.7
Thhalv10011780m.g Eutrema salsugineum HOM05D006187 ORTHO05D007621 7.7e-99 364.0 209 82.8
FAN21G2137 Fragaria x ananassa HOM05D006187 ORTHO05D007621 1.7e-98 362.8 240 76.2
Zm00001eb207490 Zea mays HOM05D006187 ORTHO05D007621 3.8e-98 361.7 209 80.9
HPP92_016292 Vanilla planifolia HOM05D006187 ORTHO05D007621 1.5e-97 359.8 208 81.2
SalBow5G2755 Salvia bowleyana HOM05D006187 ORTHO05D007621 1.9e-97 359.4 225 78.7
ATR0794G016 Amborella trichopoda HOM05D006187 ORTHO05D007621 2.5e-97 359.0 209 81.8
Sc16g0006050 Simmondsia chinensis HOM05D006187 ORTHO05D007621 2.5e-97 359.0 209 82.3
Oeu062696.2 Olea europaea HOM05D006187 ORTHO05D007621 9.4e-97 357.1 243 73.3
unitig_746.g26546 Utricularia gibba HOM05D006187 ORTHO05D007621 2.1e-96 355.9 209 80.9
Lalb_Chr17g0348481 Lupinus albus HOM05D006187 ORTHO05D007621 1.0e-95 353.6 190 88.4
SGA_v2.0_scaffold347G49550 Striga asiatica HOM05D006187 ORTHO05D007621 1.4e-95 353.2 209 81.8
Glyma.02G291000 Glycine max HOM05D006187 ORTHO05D007621 6.7e-95 350.9 193 86.0
Glyma.14G023700 Glycine max HOM05D006187 ORTHO05D007621 7.5e-94 347.4 185 88.6
CDE05G0514 Ceratophyllum demersum HOM05D006187 ORTHO05D007621 3.7e-93 345.1 209 79.4
TWI38G1854 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 8.3e-93 344.0 187 86.1
Medtr5g092720 Medicago truncatula HOM05D006187 ORTHO05D007621 1.8e-92 342.8 190 83.7
Lsat_1_v5_gn_5_3960 Lactuca sativa HOM05D006187 ORTHO05D007621 2.4e-92 342.4 191 86.4
Sabra11G0125500 Salix brachista HOM05D006187 ORTHO05D007621 5.3e-92 341.3 288 62.2
MELO3C013167.2 Cucumis melo HOM05D006187 ORTHO05D007621 7.0e-92 340.9 189 85.2
HanXRQChr08g0233871 Helianthus annuus HOM05D006187 ORTHO05D007621 2.0e-91 339.3 187 86.6
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 4.5e-91 338.2 209 78.5
HanXRQChr05g0159371 Helianthus annuus HOM05D006187 ORTHO05D007621 5.0e-90 334.7 187 85.6
ClCG09G010800 Citrullus lanatus HOM05D006187 ORTHO05D007621 8.5e-90 334.0 209 76.6
Mapoly0105s0022 Marchantia polymorpha HOM05D006187 ORTHO05D007621 5.2e-87 324.7 209 72.2
SMO201G0052 Selaginella moellendorffii HOM05D006187 ORTHO05D007621 2.6e-86 322.4 208 69.7
SEGI_20110 Sequoiadendron giganteum HOM05D006187 ORTHO05D007621 1.7e-85 319.7 206 73.3
Pp3c26_11120 Physcomitrium patens HOM05D006187 ORTHO05D007621 1.1e-84 317.0 206 72.3
QL08p010320 Quercus lobata HOM05D006187 ORTHO05D007621 3.6e-80 302.0 197 75.6
AagrBONN_evm.TU.Sc2ySwM_344.4367 Anthoceros agrestis HOM05D004720 ORTHO05D007621 6.8e-79 297.7 205 67.8
Nitab4.5_0011129g0020 Nicotiana tabacum HOM05D006187 ORTHO05D007621 4.4e-78 295.0 216 71.3
vmacro09715 Vaccinium macrocarpon HOM05D006187 ORTHO05D007621 5.4e-76 288.1 165 82.4
BolC6t35706H Brassica oleracea HOM05D006187 ORTHO05D007621 1.7e-74 283.1 165 81.2
Lj1A872G52 Lonicera japonica HOM05D006187 ORTHO05D007621 4.3e-73 278.5 151 88.1
Hma1.2p1_0673F.1_g201350 Hydrangea macrophylla HOM05D006187 ORTHO05D007621 1.7e-66 256.5 209 64.6
Cre09.g409050 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 2.3e-66 256.1 205 61.0
MCO07G461 Micromonas commoda HOM05D006187 ORTHO05D007621 4.3e-65 251.9 208 59.6
SHI26611 Sapria himalayana HOM05D006187 ORTHO05D007621 1.1e-63 247.3 185 65.4
PSO675G5262 Papaver somniferum HOM05D006187 ORTHO05D007621 5.2e-63 245.0 210 56.7
CBR_g54108 Chara braunii HOM05D006187 ORTHO05D007621 3.7e-61 238.8 167 67.7
HPP92_016312 Vanilla planifolia HOM05D006187 ORTHO05D007621 4.1e-60 235.3 135 82.2
PRCOL_00006206 Prasinoderma coloniale HOM05D006187 ORTHO05D007621 3.1e-55 219.2 206 54.4
Cpa.g.sc97.3 Carica papaya HOM05D006187 ORTHO05D007621 9.2e-52 207.6 152 67.8
PSO541G4439 Papaver somniferum HOM05D006187 ORTHO05D007621 1.2e-48 197.2 206 49.0
MBI18_g14476_MAGBIO Magnolia biondii HOM05D006187 ORTHO05D007621 6.6e-42 174.9 149 62.4
Haze_26155 Corylus avellana HOM05D006187 ORTHO05D007621 2.1e-40 169.9 207 40.6
Nitab4.5_0001913g0160 Nicotiana tabacum HOM05D006187 ORTHO05D007621 5.4e-36 155.2 84 88.1
Os02g0164800 Oryza sativa ssp. japonica HOM05D006187 ORTHO05D007621 9.3e-36 154.5 84 84.5
Prupe.4G233700 Prunus persica HOM05D006187 ORTHO05D007621 3.5e-35 152.5 143 59.4
Cre06.g274700 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 1.5e-33 147.1 136 49.3
PSO675G9324 Papaver somniferum HOM05D006187 ORTHO05D007621 5.6e-33 145.2 135 51.1
Cfa025770 Carpinus fangiana HOM05D006187 ORTHO05D007621 2.2e-29 133.3 227 36.1
HPP92_016311 Vanilla planifolia HOM05D006187 ORTHO05D007621 9.6e-25 117.9 74 74.3
AUR62015776 Chenopodium quinoa HOM05D006187 ORTHO05D007621 8.7e-18 94.7 76 63.2
QL08p010315 Quercus lobata HOM05D006187 ORTHO05D007621 3.7e-16 89.4 43 90.7


User provided reference genes

Program Settings