Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 2.7e-215 751.9 422 100.0
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 3.4e-186 655.2 420 89.3
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 3.5e-167 592.0 422 83.2
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 2.4e-160 569.3 434 73.7
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 5.4e-152 541.6 448 68.5
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 6.0e-151 538.1 448 68.3
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 7.9e-151 537.7 448 68.1
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 8.7e-150 534.3 439 70.2
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 7.6e-146 521.2 474 69.2
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 9.9e-146 520.8 461 68.1
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 1.3e-145 520.4 406 78.1
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.4e-144 516.9 422 74.2
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.9e-144 516.5 422 73.0
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 5.5e-144 515.0 424 70.3
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 1.8e-142 510.0 448 68.3
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.8e-142 510.0 422 72.7
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 2.3e-142 509.6 454 66.5
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 2.8e-140 502.7 437 68.9
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 1.4e-139 500.4 453 66.7
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 5.3e-139 498.4 426 72.5
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 1.2e-138 497.3 459 61.7
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 4.5e-138 495.4 456 66.4
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 1.0e-137 494.2 464 61.0
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 2.2e-137 493.0 450 69.6
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 2.9e-137 492.7 477 65.8
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 8.4e-137 491.1 446 63.7
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 1.9e-136 490.0 431 67.5
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 7.1e-136 488.0 424 67.7
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 3.5e-135 485.7 434 63.4
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 6.0e-135 485.0 442 62.4
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 6.0e-135 485.0 452 65.7
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 8.7e-134 481.1 441 63.7
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.9e-133 479.9 485 61.9
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 9.7e-133 477.6 486 61.1
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 3.7e-132 475.7 481 63.4
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.7e-132 475.7 423 64.1
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.8e-132 475.3 481 63.2
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.5e-130 468.8 477 63.5
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 1.0e-129 467.6 482 61.8
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 5.0e-129 465.3 436 61.7
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 6.5e-129 464.9 461 62.7
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 8.5e-129 464.5 491 59.9
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 3.2e-128 462.6 464 60.3
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 9.3e-128 461.1 434 62.9
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.0e-126 457.6 473 62.8
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 1.8e-126 456.8 438 60.7
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 2.3e-126 456.4 435 65.7
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 5.1e-126 455.3 435 63.2
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 6.7e-126 454.9 446 63.9
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.5e-125 453.8 441 62.8
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 2.5e-125 453.0 478 62.3
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 2.2e-124 449.9 481 58.4
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 4.8e-124 448.7 432 63.2
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 1.1e-123 447.6 461 57.5
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.1e-123 445.7 442 62.2
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 4.1e-123 445.7 503 56.3
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 6.9e-123 444.9 424 62.5
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.0e-121 441.0 465 56.6
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 2.2e-121 439.9 472 55.1
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 2.9e-121 439.5 423 60.8
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 2.9e-121 439.5 489 57.7
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 6.5e-121 438.3 449 63.3
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 3.2e-120 436.0 456 61.0
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 7.9e-119 431.4 468 59.4
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 7.9e-119 431.4 503 54.9
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 9.7e-117 424.5 430 57.9
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 2.8e-116 422.9 511 54.2
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 3.7e-116 422.5 469 56.7
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 1.4e-115 420.6 457 56.2
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 2.4e-115 419.9 446 59.2
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 7.0e-115 418.3 456 57.2
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 1.5e-114 417.2 430 58.6
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 3.4e-114 416.0 469 55.9
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 7.7e-114 414.8 434 56.7
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 7.7e-114 414.8 486 52.9
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 1.1e-112 411.0 431 56.8
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 3.2e-112 409.5 488 52.0
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 1.4e-110 404.1 437 55.4
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 5.2e-110 402.1 453 58.7
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 5.2e-110 402.1 423 60.8
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 1.5e-109 400.6 431 55.9
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 2.0e-109 400.2 455 53.6
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 2.6e-109 399.8 461 56.2
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 1.3e-108 397.5 439 55.6
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 3.7e-108 396.0 442 60.0
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 3.7e-108 396.0 399 64.9
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 2.4e-107 393.3 434 61.5
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 5.3e-107 392.1 459 55.1
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 5.0e-105 385.6 458 56.1
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 1.9e-104 383.6 516 53.7
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 9.4e-104 381.3 411 60.6
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 9.4e-104 381.3 401 59.9
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 4.7e-103 379.0 419 54.4
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 6.1e-103 378.6 487 54.8
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 8.0e-103 378.3 432 55.6
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 3.0e-102 376.3 432 59.0
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 3.3e-101 372.9 432 58.6
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 4.4e-101 372.5 442 56.1
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 1.7e-100 370.5 464 55.0
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.7e-100 370.5 488 50.4
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 9.1e-99 364.8 445 52.4
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 1.5e-96 357.5 486 50.0
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.3e-92 344.4 390 54.1
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 3.7e-92 342.8 429 49.7
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 3.1e-91 339.7 510 46.7
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.3e-89 334.3 431 50.1
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 7.2e-88 328.6 198 82.3
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 1.3e-84 317.8 478 49.6
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 2.0e-82 310.5 174 86.8
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 2.9e-81 306.6 494 49.8
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 1.9e-80 303.9 443 45.8
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 2.5e-80 303.5 389 50.9
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 8.9e-78 295.0 414 48.3
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 7.5e-77 292.0 427 47.8
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 9.8e-77 291.6 196 77.0
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 2.2e-76 290.4 495 42.2
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 7.0e-75 285.4 363 57.0
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 7.8e-74 282.0 324 57.1
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 1.3e-73 281.2 464 44.4
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 6.2e-71 272.3 367 54.5
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 1.5e-69 267.7 344 50.3
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 8.3e-60 235.3 128 87.5
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 5.6e-56 222.6 517 37.3
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 9.9e-53 211.8 302 51.3
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 1.3e-52 211.5 171 67.3
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 4.6e-50 203.0 384 39.8
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 4.9e-44 183.0 411 37.5
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.1e-40 171.8 402 36.3
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 4.8e-39 166.4 178 50.0
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 4.2e-35 153.3 192 45.3
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 1.1e-30 138.7 147 45.6
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 7.6e-29 132.5 323 35.3
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 1.0e-25 122.1 134 56.0
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 2.5e-24 117.5 65 87.7
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 4.8e-23 113.2 94 62.8
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 3.8e-20 103.6 97 58.8
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 6.0e-18 96.3 116 52.6
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 5.7e-16 89.7 196 34.7
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 1.3e-15 88.6 395 30.9
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 1.3e-15 88.6 395 30.9
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 2.2e-15 87.8 112 47.3
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 2.2e-15 87.8 112 47.3
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.5e-13 81.6 49 77.6
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 3.4e-13 80.5 60 65.0
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 8.8e-09 65.9 146 40.4
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 9.1e-06 55.8 139 23.0
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 9.1e-06 55.8 139 23.0
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 9.1e-06 55.8 139 23.0


User provided reference genes

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