Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 0.0e+00 1634.8 822 100.0
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 0.0e+00 1252.3 822 78.8
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 0.0e+00 1244.6 825 77.0
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 0.0e+00 1240.7 825 76.8
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 0.0e+00 1239.6 825 76.7
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 1.7e-234 816.6 855 54.4
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 2.2e-234 816.2 868 54.1
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 6.5e-234 814.7 830 54.2
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 6.7e-231 804.7 828 53.4
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 1.5e-230 803.5 837 52.8
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 2.1e-224 783.1 810 53.8
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 7.4e-222 774.6 791 53.4
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 1.4e-215 753.8 849 52.3
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 2.6e-214 749.6 833 50.5
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.3e-213 747.3 846 51.4
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 1.7e-213 746.9 828 50.1
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 4.8e-213 745.3 830 50.8
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.1e-212 744.2 850 51.3
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.4e-212 743.8 853 51.2
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.9e-209 733.4 801 51.7
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 2.7e-208 729.6 866 49.4
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 4.1e-204 715.7 807 50.3
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 8.0e-200 701.4 827 49.9
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 8.9e-199 698.0 826 49.2
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 2.8e-197 693.0 809 49.3
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 1.8e-196 690.3 804 49.5
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.0e-195 686.8 837 47.3
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 4.5e-195 685.6 799 48.3
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 7.8e-195 684.9 988 42.4
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 9.5e-193 677.9 806 47.5
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 1.0e-191 674.5 975 43.7
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 5.2e-191 672.2 806 47.1
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 5.2e-191 672.2 840 47.4
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 4.4e-190 669.1 854 45.6
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 7.5e-190 668.3 841 47.0
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 9.8e-190 667.9 806 48.1
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 4.9e-189 665.6 806 47.1
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 5.4e-188 662.1 802 46.8
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.0e-187 660.2 865 46.5
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.5e-182 644.0 794 47.5
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 2.6e-182 643.3 939 43.2
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.6e-176 622.9 821 45.6
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 3.6e-176 622.9 1028 39.8
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 4.0e-175 619.4 928 42.0
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 4.4e-174 615.9 770 47.3
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 5.8e-174 615.5 801 45.6
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 7.5e-174 615.1 930 42.0
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.9e-172 610.5 828 44.7
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 2.4e-172 610.1 825 42.8
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 4.3e-169 599.4 806 45.4
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 2.4e-164 583.6 825 42.1
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 3.5e-163 579.7 827 41.8
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 3.3e-161 573.2 661 49.8
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 3.3e-161 573.2 831 41.9
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 4.3e-161 572.8 562 54.3
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 1.2e-160 571.2 842 42.2
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.1e-160 570.5 976 39.8
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 2.1e-160 570.5 833 42.6
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.1e-160 570.5 831 41.9
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 1.4e-159 567.8 842 42.5
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.4e-159 567.0 815 42.3
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 4.4e-158 562.8 813 42.8
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 1.3e-157 561.2 857 41.5
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.7e-157 560.8 827 42.0
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 6.4e-157 558.9 844 42.8
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.4e-156 557.8 847 41.2
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 1.2e-155 554.7 843 42.7
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 1.6e-155 554.3 831 40.6
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 3.5e-155 553.1 837 41.0
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 4.6e-155 552.7 845 42.0
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 5.1e-154 549.3 847 41.2
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 3.3e-153 546.6 827 40.9
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 1.4e-151 541.2 787 41.8
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 1.8e-151 540.8 842 41.0
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 2.1e-147 527.3 810 41.6
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.3e-146 524.6 815 40.9
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 2.5e-145 520.4 849 40.2
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 5.6e-145 519.2 817 41.2
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 5.6e-145 519.2 815 41.0
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 1.6e-144 517.7 814 39.8
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.2e-141 507.3 799 40.1
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 8.4e-141 505.4 839 38.5
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 2.1e-139 500.7 830 38.6
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 4.3e-137 493.0 761 39.6
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 7.4e-137 492.3 913 35.6
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.1e-136 490.7 830 37.3
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 6.2e-136 489.2 855 38.5
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 1.1e-132 478.4 818 38.4
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.6e-128 464.5 872 37.5
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 2.8e-128 463.8 792 39.0
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 1.4e-124 451.4 745 40.9
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 4.2e-124 449.9 664 42.8
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 4.2e-124 449.9 740 40.9
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 7.9e-123 445.7 492 51.2
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.3e-122 444.1 835 36.9
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 1.1e-121 441.8 619 43.6
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 3.2e-116 423.7 851 35.7
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.7e-115 420.6 544 46.7
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 4.7e-115 419.9 652 40.3
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.2e-109 401.0 810 34.8
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.5e-105 388.3 811 34.9
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 1.8e-103 381.3 503 45.1
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 6.5e-101 372.9 518 45.0
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.9e-100 371.3 588 42.3
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 2.0e-94 351.3 882 31.7
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 3.2e-92 344.0 502 41.6
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 4.8e-88 330.1 462 43.1
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 6.3e-88 329.7 514 42.6
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.8e-87 328.2 490 41.6
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 2.0e-86 324.7 498 41.4
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 4.5e-86 323.6 477 42.8
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.0e-85 322.4 731 33.4
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 6.6e-85 319.7 485 41.6
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 4.7e-83 313.5 492 40.9
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 1.0e-82 312.4 545 39.4
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 1.4e-82 312.0 522 40.4
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 8.9e-82 309.3 476 40.8
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 8.9e-82 309.3 476 40.8
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 5.7e-81 306.6 520 40.0
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 1.7e-80 305.1 523 40.0
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.4e-79 302.0 435 43.0
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.2e-78 298.9 607 36.7
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.6e-78 298.5 646 34.7
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 1.8e-74 285.0 795 30.7
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 9.8e-73 279.3 497 38.0
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 9.8e-73 279.3 813 29.9
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.7e-72 278.5 541 36.6
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 3.7e-72 277.3 817 28.0
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 2.4e-71 274.6 755 31.5
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 3.2e-71 274.2 757 31.4
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 2.7e-70 271.2 661 32.8
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 2.7e-70 271.2 661 32.8
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.0e-69 267.7 410 42.2
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 3.9e-69 267.3 723 31.7
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 5.6e-68 263.5 576 34.5
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 2.4e-63 248.1 823 28.4
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.1e-62 245.0 369 41.2
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 3.6e-59 234.2 773 28.2
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 4.7e-59 233.8 459 35.3
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 3.0e-53 214.5 480 32.7
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 3.9e-53 214.2 290 48.6
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 6.6e-53 213.4 289 45.7
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.6e-51 207.6 482 31.3
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 1.7e-48 198.7 479 31.1
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 8.4e-40 169.9 192 49.0
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 3.5e-38 164.5 825 24.2
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 5.1e-37 160.6 105 68.6
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 3.1e-34 151.4 471 25.7
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 1.3e-32 146.0 386 33.9
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 2.1e-30 138.7 103 61.2
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 4.6e-30 137.5 408 32.4
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.7e-27 127.9 103 57.3
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 9.3e-23 113.2 742 21.8
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 9.3e-23 113.2 160 36.2
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 3.9e-21 107.8 124 50.0
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 4.2e-15 87.8 77 45.5
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.8e-11 75.1 71 39.4
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.4e-10 72.8 70 48.6
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 2.0e-09 68.9 73 47.9
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 2.6e-09 68.6 53 66.0
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 1.3e-08 66.2 406 25.4
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-08 65.5 91 35.2
CAN.G774.26 Capsicum annuum HOM05D000329 ORTHO05D000833 3.6e-06 58.2 93 37.6
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 4.6e-06 57.8 64 39.1
Nitab4.5_0010612g0010 Nicotiana tabacum HOM05D000329 ORTHO05D000833 6.1e-06 57.4 93 37.6


User provided reference genes

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