Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 0.0e+00 1260.0 650 100.0
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 0.0e+00 1134.4 655 89.5
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 0.0e+00 1113.6 655 87.3
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 0.0e+00 1112.8 654 87.5
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 0.0e+00 1105.9 655 87.2
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 2.4e-308 1061.6 656 83.1
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 7.8e-267 923.7 655 70.1
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 7.3e-265 917.1 656 70.9
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 1.6e-264 916.0 654 72.3
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 2.0e-262 909.1 656 70.7
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 2.0e-262 909.1 656 70.3
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 2.6e-262 908.7 659 69.3
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 4.2e-260 901.4 652 69.9
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 3.5e-259 898.3 655 69.9
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 9.9e-254 880.2 656 67.8
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 5.3e-247 857.8 661 66.3
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 9.0e-247 857.1 650 65.8
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.0e-246 855.9 654 66.7
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 2.0e-246 855.9 657 64.7
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 2.0e-246 855.9 650 66.3
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 3.4e-246 855.1 657 66.2
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 7.6e-246 854.0 659 64.8
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 1.4e-244 849.7 653 64.9
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 1.9e-244 849.4 656 66.0
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 3.2e-244 848.6 656 66.0
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 1.6e-243 846.3 657 63.2
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 6.0e-243 844.3 651 66.8
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 1.0e-242 843.6 659 66.0
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 1.3e-242 843.2 658 63.7
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.0e-242 842.0 658 65.2
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 5.1e-242 841.3 655 66.0
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 7.4e-241 837.4 653 64.8
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 1.3e-240 836.6 651 65.7
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.2e-240 835.9 658 64.9
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 4.8e-240 834.7 648 63.0
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 1.4e-239 833.2 663 64.7
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 3.1e-239 832.0 653 64.2
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 4.1e-239 831.6 651 64.2
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 2.6e-238 828.9 655 64.4
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 4.5e-238 828.2 652 62.9
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 5.9e-238 827.8 660 65.8
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 1.0e-237 827.0 648 61.4
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 1.7e-237 826.2 659 63.0
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 5.0e-237 824.7 657 62.1
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 1.1e-236 823.5 652 62.7
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 1.8e-234 816.2 655 64.6
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 1.1e-233 813.5 658 64.0
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 9.1e-231 803.9 641 63.3
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 5.9e-230 801.2 661 63.4
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 7.7e-230 800.8 651 63.7
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 7.7e-230 800.8 658 63.1
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 8.5e-229 797.3 675 60.3
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 1.9e-228 796.2 645 63.3
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 5.5e-228 794.7 656 61.9
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 5.5e-228 794.7 658 62.5
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 5.5e-228 794.7 658 62.6
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 1.6e-227 793.1 664 61.1
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 2.1e-227 792.7 652 62.4
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 3.6e-227 792.0 654 60.1
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 6.1e-227 791.2 653 62.0
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 6.1e-227 791.2 667 59.4
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 8.8e-226 787.3 653 62.9
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 1.1e-225 786.9 645 62.2
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 1.1e-225 786.9 646 61.3
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 4.4e-225 785.0 645 62.2
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 4.4e-225 785.0 650 61.4
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 5.7e-225 784.6 654 60.4
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 5.7e-225 784.6 656 61.1
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 7.4e-225 784.3 645 62.2
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 9.7e-225 783.9 655 60.5
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 1.3e-224 783.5 650 62.0
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 4.8e-224 781.6 654 61.8
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 2.4e-223 779.2 648 61.0
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 2.4e-223 779.2 648 61.0
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 2.4e-223 779.2 650 61.7
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 1.0e-221 773.9 632 63.4
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 2.2e-221 772.7 632 63.6
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 3.0e-218 762.3 655 60.3
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 7.4e-217 757.7 667 59.5
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 9.1e-215 750.7 658 58.5
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 1.2e-214 750.4 646 59.9
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 5.0e-213 745.0 646 57.7
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 8.5e-213 744.2 657 57.5
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 1.6e-211 740.0 652 58.0
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 1.8e-210 736.5 652 58.7
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 4.0e-210 735.3 658 59.3
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 3.7e-208 728.8 654 58.9
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 1.1e-207 727.2 653 59.0
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 1.9e-204 716.5 652 55.8
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 1.8e-202 709.9 637 59.3
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 2.3e-202 709.5 663 56.3
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 3.1e-199 699.1 505 71.1
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 7.0e-199 698.0 649 56.4
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 2.7e-198 696.0 684 53.4
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 1.3e-197 693.7 649 58.1
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 2.7e-190 669.5 663 53.5
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 1.0e-186 657.5 658 51.8
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 4.0e-186 655.6 656 53.8
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.4e-178 630.6 487 63.9
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 2.2e-152 543.5 524 54.6
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 1.3e-144 517.7 418 64.8
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 2.3e-133 480.3 358 68.7
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 1.8e-130 470.7 483 52.0
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 4.0e-130 469.5 619 45.4
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 2.1e-126 457.2 369 65.0
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 9.0e-122 441.8 665 39.1
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 6.3e-115 419.1 644 38.5
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 1.8e-106 391.0 653 37.4
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 8.0e-94 349.0 508 40.4
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 1.4e-90 338.2 269 59.9
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 2.0e-89 334.3 362 48.6
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 3.2e-87 327.0 289 55.0
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 1.8e-74 284.6 752 29.0
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 5.2e-69 266.5 352 41.8
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 1.7e-67 261.5 261 52.1
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 3.2e-66 257.3 704 28.4
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 9.2e-58 229.2 270 47.0
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 5.6e-47 193.4 213 52.6
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 1.5e-31 142.1 80 77.5
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 4.8e-30 137.1 130 58.5
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 1.5e-28 132.1 219 33.8
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 1.2e-25 122.5 211 34.6
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 5.1e-24 117.1 103 50.5
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 1.6e-22 112.1 216 36.6
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 6.9e-21 106.7 88 51.1
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 6.9e-21 106.7 78 60.3
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 1.2e-20 105.9 62 85.5
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 2.2e-19 101.7 78 59.0
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.4e-18 99.0 76 59.2
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 2.5e-18 98.2 274 29.6
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 6.0e-17 93.6 165 34.5
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 8.2e-14 83.2 97 50.5
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.2e-12 79.3 67 58.2
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 4.5e-12 77.4 96 41.7
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 4.6e-09 67.4 54 63.0
CDE05G1743 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 5.7e-07 60.5 47 55.3
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 9.7e-07 59.7 41 80.5


User provided reference genes

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