Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 4.9e-188 661.0 339 100.0
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 1.7e-175 619.4 339 92.9
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 3.3e-168 595.1 339 90.0
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 5.7e-168 594.3 331 90.6
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 1.7e-167 592.8 339 89.4
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 1.4e-166 589.7 339 87.6
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 1.0e-137 493.8 335 73.4
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 5.4e-134 481.5 344 72.4
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 2.7e-133 479.2 343 70.6
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 1.3e-132 476.9 342 71.1
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 3.8e-132 475.3 335 71.6
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 3.3e-131 472.2 336 71.7
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 3.3e-131 472.2 340 72.6
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 1.2e-130 470.3 333 71.2
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 2.8e-130 469.2 344 69.8
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 1.0e-129 467.2 339 69.6
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 1.0e-129 467.2 340 70.0
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 1.4e-129 466.8 338 69.8
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 3.0e-129 465.7 342 70.8
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 3.0e-129 465.7 333 68.8
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 6.8e-129 464.5 319 72.4
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 1.5e-128 463.4 342 70.8
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 1.3e-127 460.3 338 68.9
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 2.2e-127 459.5 334 68.3
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 2.9e-127 459.1 344 68.0
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 2.9e-127 459.1 341 69.8
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 4.9e-127 458.4 334 68.9
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 6.4e-127 458.0 334 68.3
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 6.4e-127 458.0 338 69.5
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 8.3e-127 457.6 340 69.4
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 8.3e-127 457.6 338 68.3
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 1.4e-126 456.8 341 68.6
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 1.9e-126 456.4 345 66.4
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 1.9e-126 456.4 340 68.2
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 3.2e-126 455.7 330 69.1
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 3.2e-126 455.7 339 68.4
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 4.1e-126 455.3 334 68.0
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 5.4e-126 454.9 339 68.1
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 1.2e-125 453.8 330 68.8
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 4.6e-125 451.8 345 66.1
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 6.0e-125 451.4 339 68.1
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 7.8e-125 451.1 338 67.8
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 1.0e-124 450.7 337 67.4
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 3.9e-124 448.7 337 68.0
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 6.6e-124 448.0 344 67.2
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 4.3e-123 445.3 338 65.7
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.6e-123 444.9 338 65.7
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 4.7e-122 441.8 334 66.2
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 4.7e-122 441.8 334 66.2
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 4.7e-122 441.8 338 65.7
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 8.0e-122 441.0 331 67.1
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 1.1e-121 440.7 373 62.7
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.4e-121 440.3 338 65.4
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 4.0e-121 438.7 338 65.1
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 7.5e-120 434.5 328 65.9
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 9.8e-120 434.1 325 68.0
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 2.2e-119 433.0 337 65.6
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 3.5e-117 425.6 329 65.0
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 3.0e-116 422.5 343 64.4
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 6.6e-116 421.4 337 65.0
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 6.6e-116 421.4 342 64.0
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 1.1e-115 420.6 334 65.6
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 1.5e-115 420.2 335 64.8
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 2.5e-115 419.5 336 64.3
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 2.5e-115 419.5 334 65.3
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 4.3e-115 418.7 336 64.3
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 9.5e-115 417.5 335 63.9
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 1.6e-114 416.8 334 63.2
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 2.1e-114 416.4 337 62.6
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 4.7e-114 415.2 337 62.6
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 8.1e-114 414.5 323 65.9
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 8.1e-114 414.5 331 65.0
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 8.1e-114 414.5 337 62.3
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 3.1e-113 412.5 319 66.1
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 3.1e-113 412.5 327 63.3
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 3.1e-113 412.5 320 63.4
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 4.0e-113 412.1 340 62.6
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 8.9e-113 411.0 337 64.7
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 8.9e-113 411.0 339 62.5
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 2.6e-112 409.5 340 62.4
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 5.8e-112 408.3 339 63.4
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 5.8e-112 408.3 339 64.3
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 5.8e-112 408.3 334 64.4
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 9.9e-112 407.5 319 65.8
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 3.7e-111 405.6 317 65.6
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 6.4e-111 404.8 337 61.4
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 4.1e-110 402.1 318 64.2
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 1.6e-109 400.2 336 63.4
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 2.1e-109 399.8 337 61.1
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 2.7e-109 399.4 338 61.5
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 2.3e-108 396.4 340 60.9
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 2.5e-107 392.9 342 61.7
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 2.1e-106 389.8 338 59.2
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 3.6e-106 389.0 340 60.3
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 6.2e-106 388.3 333 58.0
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 6.2e-106 388.3 333 58.0
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 5.2e-105 385.2 341 60.1
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 8.9e-105 384.4 342 59.9
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 8.9e-105 384.4 329 61.4
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 8.9e-105 384.4 333 60.7
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 2.0e-104 383.3 344 59.6
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 2.6e-104 382.9 338 59.8
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 3.0e-100 369.4 355 56.1
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 3.0e-100 369.4 324 58.0
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 6.6e-100 368.2 317 57.7
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.5e-99 367.1 319 59.9
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 1.6e-98 363.6 262 68.3
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 1.2e-96 357.5 284 61.6
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 4.3e-91 339.0 328 56.7
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 2.4e-86 323.2 252 65.9
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 2.1e-82 310.1 322 49.1
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 2.8e-82 309.7 330 52.4
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 1.7e-71 273.9 343 43.1
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 2.2e-66 256.9 353 39.7
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 7.9e-61 238.4 251 54.6
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 8.8e-60 235.0 184 65.8
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 1.5e-59 234.2 184 65.8
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 4.8e-58 229.2 226 51.3
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 4.5e-56 222.6 186 61.8
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 6.5e-55 218.8 323 39.6
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 1.7e-50 204.1 149 67.8
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 5.5e-46 189.1 136 71.3
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 6.1e-45 185.7 161 61.5
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 2.3e-44 183.7 325 35.1
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 6.5e-39 165.6 142 59.9
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 9.4e-38 161.8 118 70.3
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 4.7e-37 159.5 100 77.0
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 3.0e-36 156.8 97 76.3
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 8.8e-36 155.2 103 72.8
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 8.8e-36 155.2 100 73.0
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 1.5e-35 154.5 100 76.0
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 1.1e-33 148.3 118 65.3
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 5.3e-33 146.0 211 41.2
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 2.0e-32 144.1 116 64.7
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 1.0e-31 141.7 130 56.2
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 1.3e-31 141.4 97 70.1
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 3.6e-29 133.3 85 75.3
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 3.6e-29 133.3 85 75.3
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 8.0e-29 132.1 171 42.1
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 1.2e-27 128.3 285 30.9
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 9.8e-27 125.2 161 39.8
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 3.7e-26 123.2 171 40.9
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 8.6e-23 112.1 220 37.3
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 1.2e-21 108.2 137 48.2
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 2.8e-21 107.1 140 45.7
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 9.8e-19 98.6 113 45.1
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 1.7e-18 97.8 135 45.9
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 7.3e-14 82.4 80 60.0
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 1.4e-12 78.2 98 41.8
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 6.8e-12 75.9 48 72.9
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 3.7e-10 70.1 131 40.5
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.9e-09 67.8 58 56.9
BcaC08g46242 Brassica carinata HOM05D004841 ORTHO05D005874 4.3e-06 56.6 40 62.5


User provided reference genes

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