Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G143300 Theobroma cacao HOM05D006866 ORTHO05D008689 2.9e-111 406.8 196 100.0
Gorai.011G048600 Gossypium raimondii HOM05D006866 ORTHO05D008689 1.1e-97 361.7 197 86.3
Duzib160G0228 Durio zibethinus HOM05D006866 ORTHO05D008689 5.3e-97 359.4 196 86.7
COL.COLO4_30996 Corchorus olitorius HOM05D006866 ORTHO05D008689 2.0e-96 357.5 198 85.9
Gohir.A10G044500 Gossypium hirsutum HOM05D006866 ORTHO05D008689 1.8e-89 334.3 173 91.3
Gohir.D10G045700 Gossypium hirsutum HOM05D006866 ORTHO05D008689 1.2e-88 331.6 173 90.2
Actinidia22399 Actinidia chinensis HOM05D006866 ORTHO05D008689 5.1e-76 289.7 193 70.5
Haze_06061 Corylus avellana HOM05D006866 ORTHO05D008689 1.5e-75 288.1 195 69.7
CiPaw.10G064300 Carya illinoinensis HOM05D006866 ORTHO05D008689 4.3e-75 286.6 193 69.9
TAR626G0654 Trochodendron aralioides HOM05D006866 ORTHO05D008689 4.3e-75 286.6 160 81.2
Peaxi162Scf00149g00318 Petunia axillaris HOM05D006866 ORTHO05D008689 5.7e-75 286.2 194 67.5
Potri.012G123600 Populus trichocarpa HOM05D006866 ORTHO05D008689 5.7e-75 286.2 195 69.7
Dinv01379 Davidia involucrata HOM05D006866 ORTHO05D008689 9.6e-75 285.4 172 76.7
Cfa000706 Carpinus fangiana HOM05D006866 ORTHO05D008689 4.8e-74 283.1 192 69.3
CSS0001165 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 4.1e-73 280.0 193 67.9
Sabra12G0093800 Salix brachista HOM05D006866 ORTHO05D008689 2.0e-72 277.7 189 69.3
GSVIVG01012065001 Vitis vinifera HOM05D006866 ORTHO05D008689 2.0e-72 277.7 193 68.4
CAN.G149.30 Capsicum annuum HOM05D006866 ORTHO05D008689 2.6e-72 277.3 194 66.5
Solyc02g068760.4 Solanum lycopersicum HOM05D006866 ORTHO05D008689 1.0e-71 275.4 194 66.0
Sopen02g017930 Solanum pennellii HOM05D006866 ORTHO05D008689 1.3e-71 275.0 195 65.6
Oeu060351.1 Olea europaea HOM05D006866 ORTHO05D008689 2.2e-71 274.2 179 69.3
TWI38G1826 Tripterygium wilfordii HOM05D006866 ORTHO05D008689 3.8e-71 273.5 193 68.4
Nitab4.5_0001288g0160 Nicotiana tabacum HOM05D006866 ORTHO05D008689 5.5e-70 269.6 202 64.9
CsaV3_1G046260 Cucumis sativus L. HOM05D006866 ORTHO05D008689 9.3e-70 268.9 193 63.2
PGSC0003DMG400010422 Solanum tuberosum HOM05D006866 ORTHO05D008689 1.2e-69 268.5 195 64.1
ClCG01G009530 Citrullus lanatus HOM05D006866 ORTHO05D008689 1.6e-69 268.1 192 64.6
CSS0037136 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 2.1e-69 267.7 193 65.3
MD10G1231700 Malus domestica HOM05D006866 ORTHO05D008689 1.0e-68 265.4 165 73.9
MELO3C021744.2 Cucumis melo HOM05D006866 ORTHO05D008689 1.3e-68 265.0 193 63.2
Nn7g38175 Nelumbo nucifera HOM05D006866 ORTHO05D008689 1.3e-68 265.0 195 63.1
Prupe.4G112600 Prunus persica HOM05D006866 ORTHO05D008689 1.8e-68 264.6 194 63.9
Lalb_Chr02g0143291 Lupinus albus HOM05D006866 ORTHO05D008689 2.3e-68 264.2 190 64.7
FAN21G0631 Fragaria x ananassa HOM05D006866 ORTHO05D008689 3.0e-68 263.8 194 64.4
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 3.9e-68 263.5 195 63.1
FvH4_3g12360 Fragaria vesca HOM05D006866 ORTHO05D008689 1.1e-67 261.9 195 64.1
Sabra12G0093100 Salix brachista HOM05D006866 ORTHO05D008689 1.1e-67 261.9 153 76.5
CANSAT35G0964 Cannabis sativa HOM05D006866 ORTHO05D008689 1.5e-67 261.5 194 66.0
Eucgr.D00981 Eucalyptus grandis HOM05D006866 ORTHO05D008689 5.7e-67 259.6 180 69.4
HanXRQChr09g0258331 Helianthus annuus HOM05D006866 ORTHO05D008689 5.7e-67 259.6 184 67.4
Migut.M01983 Erythranthe guttata HOM05D006866 ORTHO05D008689 7.4e-67 259.2 175 70.3
Sed0016966 Sechium edule HOM05D006866 ORTHO05D003855 1.6e-66 258.1 193 64.8
BolC4t22960H Brassica oleracea HOM05D006866 ORTHO05D008689 2.2e-66 257.7 195 62.1
BraA05t20001Z Brassica rapa HOM05D006866 ORTHO05D008689 2.8e-66 257.3 195 62.1
BcaB02g09476 Brassica carinata HOM05D006866 ORTHO05D008689 3.7e-66 256.9 195 62.1
A05p10610 Brassica napus HOM05D006866 ORTHO05D008689 4.8e-66 256.5 195 62.1
Glyma.20G109800 Glycine max HOM05D006866 ORTHO05D008689 6.3e-66 256.1 187 64.7
RcHm_v2.0_Chr5g0020151 Rosa chinensis HOM05D006866 ORTHO05D008689 6.3e-66 256.1 194 62.9
EL10Ac4g09707 Beta vulgaris HOM05D006866 ORTHO05D008689 8.2e-66 255.8 185 63.2
C04p13710 Brassica napus HOM05D006866 ORTHO05D008689 8.2e-66 255.8 195 61.5
Ca_25672_v3 Cicer arietinum L. HOM05D006866 ORTHO05D008689 1.1e-65 255.4 190 62.6
Aa31LG9G16090 Aethionema arabicum HOM05D006866 ORTHO05D008689 3.1e-65 253.8 195 61.0
Thhalv10017758m.g Eutrema salsugineum HOM05D006866 ORTHO05D008689 3.1e-65 253.8 197 61.9
DCAR_001319 Daucus carota HOM05D006866 ORTHO05D008689 4.1e-65 253.4 185 63.2
ECA232G0121 Erigeron canadensis HOM05D006866 ORTHO05D008689 4.1e-65 253.4 184 63.6
Phvul.007G021100 Phaseolus vulgaris HOM05D006866 ORTHO05D008689 6.9e-65 252.7 169 68.0
Lj5g0008795 Lotus japonicus HOM05D006866 ORTHO05D008689 9.1e-65 252.3 188 62.2
Cc09_g06040 Coffea canephora HOM05D006866 ORTHO05D008689 2.0e-64 251.1 166 68.1
QL11p016582 Quercus lobata HOM05D006866 ORTHO05D008689 2.6e-64 250.8 225 57.3
Aqoxy1G01457 Aquilegia oxysepala HOM05D006866 ORTHO05D008689 3.4e-64 250.4 197 60.9
TPR.G2424 Trifolium pratense HOM05D006866 ORTHO05D008689 3.4e-64 250.4 188 62.8
Carub.0004s1681 Capsella rubella HOM05D006866 ORTHO05D008689 4.5e-64 250.0 196 59.7
AT2G35130 Arabidopsis thaliana HOM05D006866 ORTHO05D008689 5.9e-64 249.6 195 61.0
VMungo0720G0148 Vigna mungo HOM05D006866 ORTHO05D008689 5.9e-64 249.6 187 63.1
Medtr1g112240 Medicago truncatula HOM05D006866 ORTHO05D008689 7.7e-64 249.2 166 67.5
AUR62006933 Chenopodium quinoa HOM05D006866 ORTHO05D008689 1.0e-63 248.8 171 64.3
vmacro03523 Vaccinium macrocarpon HOM05D006866 ORTHO05D008689 1.0e-63 248.8 221 56.6
AUR62006935 Chenopodium quinoa HOM05D006866 ORTHO05D008689 1.3e-63 248.4 171 63.7
Sp4g17360 Schrenkiella parvula HOM05D006866 ORTHO05D008689 1.7e-63 248.1 195 61.5
arahy.Tifrunner.gnm1.ann1.X32MFV Arachis hypogaea HOM05D006866 ORTHO05D008689 2.2e-63 247.7 166 67.5
THA.LOC104814359 Tarenaya hassleriana HOM05D006866 ORTHO05D008689 2.2e-63 247.7 190 62.1
AL4G31140 Arabidopsis lyrata HOM05D006866 ORTHO05D008689 6.5e-63 246.1 198 60.1
MBI18_g11481_MAGBIO Magnolia biondii HOM05D006866 ORTHO05D008689 1.1e-62 245.4 172 65.7
FAN25G0624 Fragaria x ananassa HOM05D006866 ORTHO05D008689 2.5e-62 244.2 194 61.9
Psat6g231320 Pisum sativum HOM05D006866 ORTHO05D008689 5.5e-62 243.0 189 60.8
Nitab4.5_0007533g0010 Nicotiana tabacum HOM05D006866 ORTHO05D008689 1.6e-61 241.5 166 68.1
TPR.G2448 Trifolium pratense HOM05D006866 ORTHO05D008689 1.0e-60 238.8 219 54.3
PSO675G2302 Papaver somniferum HOM05D006866 ORTHO05D008689 5.1e-60 236.5 161 64.0
PSO541G3299 Papaver somniferum HOM05D006866 ORTHO05D008689 7.4e-59 232.6 161 63.4
Sabra12G0093000 Salix brachista HOM05D000009 ORTHO05D000008 4.1e-57 226.9 196 58.7
EL10Ac8g19312 Beta vulgaris HOM05D006866 ORTHO05D008689 5.3e-57 226.5 190 56.8
Lsat_1_v5_gn_8_117320 Lactuca sativa HOM05D006866 ORTHO05D008689 3.8e-55 220.3 136 72.8
CARHR129270 Cardamine hirsuta HOM05D006866 ORTHO05D008689 6.5e-55 219.5 139 71.2
Cpa.g.sc135.7 Carica papaya HOM05D006866 ORTHO05D008689 3.2e-54 217.2 131 76.3
ATR0763G194 Amborella trichopoda HOM05D006866 ORTHO05D008689 7.2e-54 216.1 151 66.2
CDE01G0264 Ceratophyllum demersum HOM05D006866 ORTHO05D008689 2.7e-53 214.2 149 64.4
Zm00001eb233080 Zea mays HOM05D006866 ORTHO05D008689 8.8e-52 209.1 154 59.7
Lj2A350T60 Lonicera japonica HOM05D006866 ORTHO05D008689 3.3e-51 207.2 208 51.9
AUR62000579 Chenopodium quinoa HOM05D006866 ORTHO05D008689 4.5e-48 196.8 189 52.9
arahy.Tifrunner.gnm1.ann1.0F554D Arachis hypogaea HOM05D006866 ORTHO05D008689 1.3e-47 195.3 166 56.6
PGR004G0545 Punica granatum HOM05D006866 ORTHO05D008689 5.2e-44 183.3 163 55.2
HanXRQChr10g0279011 Helianthus annuus HOM05D006866 ORTHO05D008689 1.7e-39 168.3 128 62.5
Lsat_1_v5_gn_6_52341 Lactuca sativa HOM05D006866 ORTHO05D008689 2.0e-35 154.8 108 64.8
Os02g0170000 Oryza sativa ssp. japonica HOM05D006866 ORTHO05D008689 8.3e-34 149.4 108 63.9
Sabra12G0092900 Salix brachista HOM05D000009 ORTHO05D000008 1.2e-32 145.6 133 53.4
Manes.13G080558 Manihot esculenta HOM05D006866 ORTHO05D008689 4.0e-28 130.6 76 77.6
SMO165G0132 Selaginella moellendorffii HOM05D006866 ORTHO05D008689 8.6e-23 112.8 131 38.2
AagrBONN_evm.TU.Sc2ySwM_368.1444 Anthoceros agrestis HOM05D006866 ORTHO05D008689 5.6e-22 110.2 128 37.5
Mapoly0002s0014 Marchantia polymorpha HOM05D006866 ORTHO05D008689 5.7e-19 100.1 136 35.3
CSS0019706 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 2.9e-18 97.8 56 76.8
Pp3c6_26210 Physcomitrium patens HOM05D006866 ORTHO05D008689 1.1e-17 95.9 139 36.7
Haze_06053 Corylus avellana HOM05D006866 ORTHO05D008689 7.0e-17 93.2 195 34.9
Pp3c16_5890 Physcomitrium patens HOM05D006866 ORTHO05D008689 1.2e-16 92.4 131 38.2
Lsat_1_v5_gn_3_50301 Lactuca sativa HOM05D006866 ORTHO05D008689 1.6e-16 92.0 55 72.7
Cfa008015 Carpinus fangiana HOM05D000082 ORTHO05D008689 8.6e-15 86.3 108 50.0
RhsimUnG0235100 Rhododendron simsii HOM05D006866 ORTHO05D008689 1.1e-14 85.9 54 66.7
CAN.G27.8 Capsicum annuum HOM05D006866 ORTHO05D008689 1.9e-14 85.1 73 54.8
Ciclev10015335m.g Citrus clementina HOM05D006866 ORTHO05D008689 4.7e-13 80.5 44 84.1
Lsat_1_v5_gn_8_128381 Lactuca sativa HOM05D006866 ORTHO05D008689 4.7e-13 80.5 46 73.9
CSS0001056 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 1.8e-12 78.6 43 86.0
CSS0048441 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 1.8e-12 78.6 43 86.0
Haze_06062 Corylus avellana HOM05D006866 ORTHO05D008689 8.3e-10 69.7 41 78.0
MD05G1251100 Malus domestica HOM05D006866 ORTHO05D008689 1.4e-09 68.9 43 79.1
EL10Ac8g19311 Beta vulgaris HOM05D006866 ORTHO05D008689 1.9e-09 68.6 41 73.2
CARHR141110 Cardamine hirsuta HOM05D006866 ORTHO05D008689 1.9e-09 68.6 45 64.4
CAN.G1114.2 Capsicum annuum HOM05D006866 ORTHO05D008689 2.0e-08 65.1 41 65.9
Lj5g0020884 Lotus japonicus HOM05D000132 ORTHO05D000058 2.7e-08 64.7 37 83.8
CARHR180830 Cardamine hirsuta HOM05D006866 ORTHO05D008689 1.7e-07 62.0 46 58.7
Cfa002018 Carpinus fangiana HOM05D000082 ORTHO05D000038 1.5e-06 58.9 36 77.8


User provided reference genes

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