Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 2.6e-71 271.9 136 100.0
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 3.9e-67 258.1 137 95.6
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 3.6e-65 251.5 137 92.0
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 8.9e-64 246.9 138 90.6
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 2.6e-63 245.4 138 89.9
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 2.6e-63 245.4 138 89.9
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 9.9e-63 243.4 147 86.4
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 3.5e-60 235.0 136 84.6
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 6.0e-60 234.2 138 84.1
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 6.0e-60 234.2 138 84.1
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 1.0e-59 233.4 134 84.3
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 1.3e-59 233.0 134 87.3
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 1.7e-59 232.6 134 85.8
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 1.7e-59 232.6 136 83.1
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 3.9e-59 231.5 136 83.1
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 6.6e-59 230.7 137 83.2
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 8.7e-59 230.3 136 79.4
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 1.5e-58 229.6 139 84.9
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 1.5e-58 229.6 139 84.9
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 3.3e-58 228.4 136 83.8
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 5.6e-58 227.6 136 82.4
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.6e-57 226.1 136 82.4
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 2.1e-57 225.7 136 81.6
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 4.7e-57 224.6 138 79.7
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 1.4e-56 223.0 136 80.9
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 1.4e-56 223.0 136 82.4
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 1.4e-56 223.0 137 81.0
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 2.4e-56 222.2 136 81.6
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 2.4e-56 222.2 135 81.5
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 4.0e-56 221.5 136 80.1
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 5.2e-56 221.1 136 80.9
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 5.2e-56 221.1 136 80.9
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 1.2e-55 219.9 136 80.9
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 1.5e-55 219.5 137 79.6
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.5e-55 219.5 137 81.0
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 2.6e-55 218.8 134 80.6
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 4.4e-55 218.0 137 78.1
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 4.4e-55 218.0 136 80.1
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 5.8e-55 217.6 136 79.4
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 5.8e-55 217.6 136 79.4
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 7.6e-55 217.2 136 77.9
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 9.9e-55 216.9 136 79.4
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 1.3e-54 216.5 138 79.7
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 2.2e-54 215.7 137 79.6
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 2.2e-54 215.7 134 81.3
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 2.2e-54 215.7 136 79.4
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 2.2e-54 215.7 132 81.1
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 2.9e-54 215.3 137 78.1
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 4.9e-54 214.5 137 77.4
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 4.9e-54 214.5 138 77.5
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 6.4e-54 214.2 136 76.5
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 8.4e-54 213.8 136 75.7
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 1.4e-53 213.0 134 79.9
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 1.4e-53 213.0 139 78.4
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 1.9e-53 212.6 136 76.5
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 2.4e-53 212.2 137 79.6
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 2.4e-53 212.2 137 78.8
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 3.2e-53 211.8 137 78.1
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 7.1e-53 210.7 136 75.7
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 7.1e-53 210.7 138 77.5
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 9.3e-53 210.3 138 76.8
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 2.1e-52 209.1 132 81.8
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 2.1e-52 209.1 134 79.9
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 2.1e-52 209.1 136 73.5
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 3.5e-52 208.4 136 75.0
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 3.5e-52 208.4 138 76.1
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 4.6e-52 208.0 131 79.4
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 6.0e-52 207.6 143 74.1
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 7.8e-52 207.2 138 75.4
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 7.8e-52 207.2 136 75.0
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 7.8e-52 207.2 134 77.6
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 2.3e-51 205.7 131 80.9
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 3.0e-51 205.3 137 73.7
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 3.9e-51 204.9 134 77.6
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 5.1e-51 204.5 139 74.1
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 5.1e-51 204.5 139 75.5
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 6.6e-51 204.1 131 78.6
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 6.6e-51 204.1 136 73.5
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 6.6e-51 204.1 136 73.5
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 8.7e-51 203.8 137 76.6
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 1.9e-50 202.6 139 74.1
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 1.3e-49 199.9 136 72.8
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 2.8e-49 198.7 146 71.2
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 2.8e-49 198.7 146 71.2
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 2.8e-49 198.7 146 71.2
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 2.8e-49 198.7 146 71.2
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 8.1e-49 197.2 136 71.3
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 1.1e-48 196.8 136 72.1
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 2.4e-48 195.7 130 72.3
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 4.0e-48 194.9 137 70.1
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 5.3e-48 194.5 138 70.3
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 9.0e-48 193.7 137 71.5
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 2.6e-47 192.2 138 69.6
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 4.5e-47 191.4 137 70.8
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 2.9e-46 188.7 114 77.2
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 3.8e-46 188.3 114 78.9
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 3.8e-46 188.3 131 71.0
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 4.9e-46 188.0 115 78.3
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 8.4e-46 187.2 109 81.7
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 1.1e-45 186.8 113 77.9
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 1.1e-45 186.8 113 77.9
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 1.1e-45 186.8 113 77.9
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 1.9e-45 186.0 115 76.5
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 3.2e-45 185.3 113 77.0
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 3.2e-45 185.3 113 77.0
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 3.2e-45 185.3 114 77.2
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 3.2e-45 185.3 131 69.5
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 3.2e-45 185.3 131 69.5
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 4.2e-45 184.9 115 75.7
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 9.3e-45 183.7 110 80.9
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 2.1e-44 182.6 119 72.3
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 3.5e-44 181.8 114 74.6
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 3.5e-44 181.8 125 71.2
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 2.3e-43 179.1 119 79.0
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 6.7e-43 177.6 120 70.0
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 2.5e-42 175.6 118 70.3
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 1.6e-41 172.9 113 79.6
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 3.7e-41 171.8 131 69.5
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 3.1e-40 168.7 133 67.7
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 1.2e-36 156.8 137 62.8
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 5.1e-35 151.4 98 70.4
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 3.3e-34 148.7 135 56.3
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 7.4e-34 147.5 93 72.0
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 4.0e-32 141.7 86 75.6
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 7.6e-31 137.5 118 66.9
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 2.5e-29 132.5 128 57.8
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 2.7e-28 129.0 124 55.6
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 7.9e-28 127.5 112 58.0
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 1.9e-26 122.9 81 81.5
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 3.7e-25 118.6 74 82.4
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 8.2e-25 117.5 135 54.1
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 6.9e-24 114.4 126 48.4
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 1.0e-22 110.5 78 75.6
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 1.0e-22 110.5 72 69.4
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 1.9e-21 106.3 59 79.7
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 1.0e-19 100.5 76 63.2
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 1.4e-19 100.1 84 64.3
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 5.1e-19 98.2 100 51.0
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 8.8e-19 97.4 59 74.6
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 1.9e-18 96.3 151 39.1
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 4.8e-17 91.7 56 80.4
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 8.2e-17 90.9 87 57.5
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 1.4e-13 80.1 80 52.5
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 1.6e-12 76.6 59 59.3
MELO3C033488.2 Cucumis melo HOM05D005190 ORTHO05D006183 7.9e-12 74.3 78 59.0
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 7.9e-12 74.3 142 38.7
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 2.3e-11 72.8 132 37.1
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 9.7e-10 67.4 81 49.4
Atru.chr4.3129 Acer truncatum HOM05D005190 ORTHO05D006183 3.8e-06 55.5 47 72.3


User provided reference genes

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