Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 9.9e-92 340.1 173 100.0
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 5.2e-85 317.8 176 92.0
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 1.1e-82 310.1 176 90.3
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 5.4e-82 307.8 176 89.8
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 9.3e-82 307.0 176 89.8
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 9.6e-79 297.0 174 86.8
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 6.2e-78 294.3 176 84.1
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.8e-77 292.7 176 83.5
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 3.1e-77 292.0 176 84.7
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 5.3e-77 291.2 176 84.7
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 2.2e-75 285.8 177 84.7
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 1.1e-74 283.5 177 81.9
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 3.2e-74 282.0 176 84.1
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 5.4e-74 281.2 176 81.8
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 5.4e-74 281.2 177 81.9
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 7.1e-74 280.8 177 81.9
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 7.1e-74 280.8 177 81.9
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 9.3e-74 280.4 180 82.8
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 1.6e-73 279.6 165 84.8
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 2.7e-73 278.9 177 81.9
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 4.6e-73 278.1 177 81.4
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 4.6e-73 278.1 178 79.8
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 6.0e-73 277.7 181 79.6
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 6.0e-73 277.7 176 82.4
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 8.7e-72 273.9 176 78.4
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 1.5e-71 273.1 179 79.3
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.5e-71 273.1 178 79.2
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.5e-71 273.1 175 80.0
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 1.5e-71 273.1 178 80.9
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.5e-71 272.3 178 78.7
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.5e-71 272.3 178 79.2
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 4.3e-71 271.6 179 81.0
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 5.6e-71 271.2 176 78.4
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 5.6e-71 271.2 175 81.1
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 2.1e-70 269.2 177 80.2
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 4.8e-70 268.1 176 78.4
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 6.2e-70 267.7 179 78.8
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 6.2e-70 267.7 179 78.8
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 8.1e-70 267.3 178 79.8
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 2.4e-69 265.8 177 78.0
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.4e-69 265.8 179 78.8
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 3.1e-69 265.4 176 79.5
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 9.0e-69 263.8 177 78.5
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 9.0e-69 263.8 176 77.8
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 1.5e-68 263.1 173 79.8
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 2.0e-68 262.7 174 76.4
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 2.6e-68 262.3 184 76.1
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 2.6e-68 262.3 176 79.5
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 3.4e-68 261.9 175 77.7
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 5.8e-68 261.2 180 75.6
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 9.9e-68 260.4 174 78.2
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 1.3e-67 260.0 172 79.7
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.7e-67 259.6 177 76.3
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 1.7e-67 259.6 177 77.4
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 1.7e-67 259.6 184 75.5
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 1.7e-67 259.6 184 75.5
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 2.2e-67 259.2 180 73.3
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 2.9e-67 258.8 178 76.4
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 2.9e-67 258.8 178 76.4
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 3.8e-67 258.5 177 75.7
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 3.8e-67 258.5 177 75.7
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 3.8e-67 258.5 177 75.7
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 4.9e-67 258.1 170 77.6
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 6.4e-67 257.7 177 75.1
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 8.4e-67 257.3 177 75.1
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 8.4e-67 257.3 177 75.1
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.1e-66 256.9 177 76.8
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 1.1e-66 256.9 178 77.5
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 1.4e-66 256.5 176 77.3
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 1.4e-66 256.5 176 76.1
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.9e-66 256.1 178 75.3
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 1.9e-66 256.1 184 75.0
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.9e-66 256.1 170 76.5
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 2.4e-66 255.8 177 76.3
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 5.4e-66 254.6 180 73.9
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 9.3e-66 253.8 178 74.7
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.2e-65 253.4 180 72.8
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 1.2e-65 253.4 180 72.2
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.6e-65 253.1 178 75.8
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 2.7e-65 252.3 164 77.4
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 4.6e-65 251.5 180 73.3
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 4.6e-65 251.5 180 73.3
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 6.0e-65 251.1 185 73.5
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 7.9e-65 250.8 173 76.3
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 7.9e-65 250.8 177 75.7
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 1.0e-64 250.4 177 75.7
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 1.0e-64 250.4 178 73.6
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 3.0e-64 248.8 179 74.3
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 6.7e-64 247.7 178 73.6
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 6.7e-64 247.7 178 73.6
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 6.7e-64 247.7 182 73.1
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 2.5e-63 245.7 192 68.2
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 4.3e-63 245.0 175 72.6
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 4.3e-63 245.0 179 71.5
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 5.6e-63 244.6 177 72.3
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 2.1e-62 242.7 177 70.6
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.8e-62 242.3 176 73.9
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 2.8e-62 242.3 174 73.6
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 3.7e-62 241.9 176 73.3
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.4e-61 240.0 178 70.2
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 1.8e-61 239.6 181 68.5
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 4.0e-61 238.4 180 68.3
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 5.3e-61 238.0 171 71.9
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 1.2e-60 236.9 179 69.8
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 2.6e-60 235.7 184 71.2
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 3.4e-60 235.3 184 69.6
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 4.5e-60 235.0 178 69.1
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 1.0e-59 233.8 175 69.1
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 2.9e-59 232.3 181 66.9
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 4.9e-59 231.5 174 70.1
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 8.4e-59 230.7 175 68.0
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 1.1e-58 230.3 181 71.3
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 3.2e-58 228.8 175 67.4
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 4.2e-58 228.4 152 73.7
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 4.2e-58 228.4 166 69.9
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.6e-57 226.5 171 67.8
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.1e-57 226.1 177 68.4
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 3.5e-57 225.3 172 69.2
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 4.6e-57 224.9 171 67.3
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 6.0e-57 224.6 166 67.5
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 7.9e-57 224.2 127 83.5
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 1.3e-56 223.4 167 68.3
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 3.0e-56 222.2 177 67.8
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 3.9e-56 221.9 153 73.9
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 5.1e-56 221.5 245 52.7
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 4.8e-54 214.9 182 66.5
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 3.1e-53 212.2 179 64.2
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 1.2e-52 210.3 157 71.3
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 2.2e-51 206.1 154 70.8
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 6.5e-51 204.5 119 81.5
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 8.4e-51 204.1 180 62.2
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 5.7e-47 191.4 143 61.5
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 3.7e-46 188.7 172 56.4
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 4.8e-46 188.3 176 58.5
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 1.5e-44 183.3 145 64.1
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 2.0e-44 183.0 182 54.4
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 3.8e-43 178.7 180 57.2
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 5.0e-43 178.3 149 59.1
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 9.4e-42 174.1 179 53.6
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.1e-39 167.2 89 88.8
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.4e-37 159.5 86 88.4
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.5e-36 156.8 86 86.0
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 5.0e-35 151.8 175 49.1
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 3.2e-34 149.1 89 84.3
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 4.2e-34 148.7 175 49.7
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 2.7e-33 146.0 112 71.4
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 1.4e-32 143.7 120 67.5
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 6.3e-30 134.8 129 59.7
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.0e-27 127.5 126 56.3
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 1.2e-25 120.6 142 49.3
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 4.4e-23 112.1 126 47.6
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 2.8e-22 109.4 119 43.7
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 7.0e-21 104.8 84 66.7
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 2.0e-20 103.2 139 38.8
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 2.6e-20 102.8 108 42.6
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 2.6e-20 102.8 90 62.2
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 4.2e-18 95.5 104 51.9
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 4.2e-18 95.5 104 51.9
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.0e-16 90.9 46 91.3
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 3.1e-13 79.3 95 41.1
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 4.1e-13 79.0 80 53.8
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 3.8e-11 72.4 191 35.6
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 5.5e-10 68.6 85 47.1
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 2.1e-09 66.6 65 52.3
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.7e-06 57.0 79 46.8


User provided reference genes

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