Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G103800 Theobroma cacao HOM05D005735 ORTHO05D006547 7.8e-55 216.9 107 100.0
Haze_20854 Corylus avellana HOM05D005735 ORTHO05D006547 2.1e-12 75.9 40 87.5
Haze_20857 Corylus avellana HOM05D005735 ORTHO05D006547 2.1e-12 75.9 40 87.5
Duzib093G1348 Durio zibethinus HOM05D005735 ORTHO05D006547 8.2e-12 73.9 37 97.3
Duzib128G0016 Durio zibethinus HOM05D005735 ORTHO05D006547 8.2e-12 73.9 37 97.3
Migut.J00281 Erythranthe guttata HOM05D005735 ORTHO05D006547 4.0e-11 71.6 41 82.9
Hma1.2p1_0766F.1_g215130 Hydrangea macrophylla HOM05D005735 ORTHO05D006547 4.0e-11 71.6 37 94.6
MD04G1136300 Malus domestica HOM05D005735 ORTHO05D006547 4.0e-11 71.6 37 91.9
Thecc.05G031800 Theobroma cacao HOM05D005735 ORTHO05D006547 4.0e-11 71.6 37 94.6
Dinv37132 Davidia involucrata HOM05D005735 ORTHO05D006547 5.3e-11 71.2 37 91.9
Sed0015161 Sechium edule HOM05D005735 ORTHO05D006547 5.3e-11 71.2 37 86.5
Cpa.g.sc56.31 Carica papaya HOM05D005735 ORTHO05D006547 6.9e-11 70.9 48 72.9
Cfa017317 Carpinus fangiana HOM05D005735 ORTHO05D006547 6.9e-11 70.9 37 89.2
Gohir.A09G153300 Gossypium hirsutum HOM05D005735 ORTHO05D006547 6.9e-11 70.9 37 89.2
Gohir.D09G149000 Gossypium hirsutum HOM05D005735 ORTHO05D006547 6.9e-11 70.9 37 89.2
Gorai.006G170200 Gossypium raimondii HOM05D005735 ORTHO05D006547 6.9e-11 70.9 37 89.2
Actinidia13829 Actinidia chinensis HOM05D005735 ORTHO05D006547 9.0e-11 70.5 49 73.5
Hund27335 Selenicereus undatus HOM05D005735 ORTHO05D006547 9.0e-11 70.5 37 91.9
COL.COLO4_14723 Corchorus olitorius HOM05D005735 ORTHO05D006547 1.2e-10 70.1 37 89.2
FAN02G2999 Fragaria x ananassa HOM05D005735 ORTHO05D006547 1.2e-10 70.1 39 82.1
MSTRG.5635 Avicennia marina HOM05D005735 ORTHO05D006547 1.5e-10 69.7 37 89.2
GSVIVG01034092001 Vitis vinifera HOM05D005735 ORTHO05D006547 1.5e-10 69.7 37 86.5
CiPaw.09G199400 Carya illinoinensis HOM05D005735 ORTHO05D006547 2.0e-10 69.3 37 86.5
Hund16974 Selenicereus undatus HOM05D005735 ORTHO05D006547 2.0e-10 69.3 45 71.1
Cc06_g02200 Coffea canephora HOM05D005735 ORTHO05D006547 2.6e-10 68.9 45 75.6
Dinv35555 Davidia involucrata HOM05D005735 ORTHO05D006547 2.6e-10 68.9 37 89.2
MD12G1150800 Malus domestica HOM05D005735 ORTHO05D006547 2.6e-10 68.9 37 89.2
PGR031G0186 Punica granatum HOM05D005735 ORTHO05D006547 2.6e-10 68.9 37 89.2
Rhsim04G0162200 Rhododendron simsii HOM05D005735 ORTHO05D006547 2.6e-10 68.9 37 89.2
Sabra06G0068800 Salix brachista HOM05D005735 ORTHO05D006547 2.6e-10 68.9 38 84.2
vmacro08634 Vaccinium macrocarpon HOM05D005735 ORTHO05D006547 2.6e-10 68.9 37 89.2
EL10Ac1g00952 Beta vulgaris HOM05D005735 ORTHO05D006547 3.4e-10 68.6 45 73.3
CAN.G229.30 Capsicum annuum HOM05D005735 ORTHO05D006547 3.4e-10 68.6 37 89.2
CiPaw.10G148500 Carya illinoinensis HOM05D005735 ORTHO05D006547 3.4e-10 68.6 37 86.5
Actinidia29177 Actinidia chinensis HOM05D005735 ORTHO05D006547 4.5e-10 68.2 37 89.2
C08p29170 Brassica napus HOM05D005735 ORTHO05D006547 4.5e-10 68.2 50 68.0
FAN14G2901 Fragaria x ananassa HOM05D005735 ORTHO05D006547 4.5e-10 68.2 53 64.2
Glyma.01G099700 Glycine max HOM05D005735 ORTHO05D006547 4.5e-10 68.2 37 83.8
Atru.chr8.2067 Acer truncatum HOM05D005735 ORTHO05D006547 7.6e-10 67.4 37 83.8
PSO339G4903 Papaver somniferum HOM05D005735 ORTHO05D006547 7.6e-10 67.4 37 86.5
BcaB01g00229 Brassica carinata HOM05D005735 ORTHO05D006547 1.0e-09 67.0 37 83.8
BcaC07g39745 Brassica carinata HOM05D000012 ORTHO05D002345 1.0e-09 67.0 37 83.8
A09p46850 Brassica napus HOM05D005735 ORTHO05D006547 1.0e-09 67.0 37 83.8
BolC8t50518H Brassica oleracea HOM05D005735 ORTHO05D006547 1.0e-09 67.0 37 83.8
BraA09t40153Z Brassica rapa HOM05D005735 ORTHO05D006547 1.0e-09 67.0 37 83.8
Migut.J00280 Erythranthe guttata HOM05D005735 ORTHO05D006547 1.0e-09 67.0 37 86.5
FvH4_6g12970 Fragaria vesca HOM05D005735 ORTHO05D006547 1.0e-09 67.0 37 83.8
FAN05G2836 Fragaria x ananassa HOM05D005735 ORTHO05D006547 1.0e-09 67.0 37 83.8
Prupe.6G262400 Prunus persica HOM05D005735 ORTHO05D006547 1.3e-09 66.6 37 83.8
AUR62004273 Chenopodium quinoa HOM05D005735 ORTHO05D006547 1.7e-09 66.2 37 83.8
AUR62033384 Chenopodium quinoa HOM05D005735 ORTHO05D006547 1.7e-09 66.2 37 83.8
Ciclev10012178m.g Citrus clementina HOM05D005735 ORTHO05D006547 1.7e-09 66.2 37 81.1
Phvul.010G015300 Phaseolus vulgaris HOM05D005735 ORTHO05D006547 1.7e-09 66.2 37 81.1
Potri.006G091000 Populus trichocarpa HOM05D005735 ORTHO05D006547 1.7e-09 66.2 37 83.8
SalBow1G2503 Salvia bowleyana HOM05D000666 ORTHO05D006547 1.7e-09 66.2 37 83.8
TAR636G0229 Trochodendron aralioides HOM05D005735 ORTHO05D006547 1.7e-09 66.2 37 83.8
unitig_578.g15880 Utricularia gibba HOM05D005735 ORTHO05D006547 1.7e-09 66.2 41 75.6
HanXRQChr06g0177411 Helianthus annuus HOM05D005735 ORTHO05D006547 2.2e-09 65.9 45 73.3
Lj3g0007667 Lotus japonicus HOM05D005735 ORTHO05D006547 2.2e-09 65.9 37 83.8
Solyc09g011300.3 Solanum lycopersicum HOM05D005735 ORTHO05D006547 2.2e-09 65.9 37 86.5
CsaV3_4G025430 Cucumis sativus L. HOM05D005735 ORTHO05D006547 2.9e-09 65.5 37 81.1
Nitab4.5_0000362g0060 Nicotiana tabacum HOM05D005735 ORTHO05D006547 2.9e-09 65.5 37 83.8
Nitab4.5_0006535g0030 Nicotiana tabacum HOM05D005735 ORTHO05D006547 2.9e-09 65.5 37 83.8
Oeu001404.1 Olea europaea HOM05D005735 ORTHO05D006547 2.9e-09 65.5 37 83.8
PSO513G0055 Papaver somniferum HOM05D005735 ORTHO05D006547 2.9e-09 65.5 37 83.8
BcaB02g07762 Brassica carinata HOM05D005735 ORTHO05D006547 3.8e-09 65.1 48 64.6
RcHm_v2.0_Chr3g0465081 Rosa chinensis HOM05D005735 ORTHO05D006547 3.8e-09 65.1 37 81.1
Ah.05g175740 Amaranthus hybridus HOM05D005735 ORTHO05D006547 4.9e-09 64.7 46 65.2
CSS0004316 Camellia sinensis var. sinensis HOM05D005735 ORTHO05D006547 4.9e-09 64.7 37 83.8
Ca_20080_v3 Cicer arietinum L. HOM05D005735 ORTHO05D006547 4.9e-09 64.7 37 81.1
Manes.09G096300 Manihot esculenta HOM05D005735 ORTHO05D006547 4.9e-09 64.7 37 81.1
Sopen09g006020 Solanum pennellii HOM05D005735 ORTHO05D006547 4.9e-09 64.7 37 83.8
TPR.G17885 Trifolium pratense HOM05D005735 ORTHO05D006547 4.9e-09 64.7 37 81.1
Carub.0005s2048 Capsella rubella HOM05D005735 ORTHO05D006547 6.5e-09 64.3 37 78.4
MELO3C003165.2 Cucumis melo HOM05D005735 ORTHO05D006547 6.5e-09 64.3 37 78.4
ECA236G4371 Erigeron canadensis HOM05D005735 ORTHO05D006547 6.5e-09 64.3 45 71.1
Eucgr.B02718 Eucalyptus grandis HOM05D005735 ORTHO05D006547 6.5e-09 64.3 37 83.8
Glyma.03G069600 Glycine max HOM05D005735 ORTHO05D006547 6.5e-09 64.3 37 81.1
Peaxi162Scf00318g00510 Petunia axillaris HOM05D005735 ORTHO05D006547 6.5e-09 64.3 37 83.8
BcaC08g44651 Brassica carinata HOM05D005735 ORTHO05D006547 8.4e-09 63.9 37 78.4
C06p21670 Brassica napus HOM05D005735 ORTHO05D006547 8.4e-09 63.9 37 78.4
BolC6t37356H Brassica oleracea HOM05D005735 ORTHO05D006547 8.4e-09 63.9 37 78.4
ClCG04G007800 Citrullus lanatus HOM05D005735 ORTHO05D006547 8.4e-09 63.9 39 74.4
Medtr4g020090 Medicago truncatula HOM05D005735 ORTHO05D006547 8.4e-09 63.9 37 81.1
Sp5g08500 Schrenkiella parvula HOM05D005735 ORTHO05D006547 8.4e-09 63.9 37 78.4
CDE04G2966 Ceratophyllum demersum HOM05D005735 ORTHO05D006547 1.4e-08 63.2 45 68.9
AL5G34880 Arabidopsis lyrata HOM05D005735 ORTHO05D006547 1.9e-08 62.8 37 78.4
AT3G53900 Arabidopsis thaliana HOM05D005735 ORTHO05D006547 1.9e-08 62.8 37 78.4
A07p21840 Brassica napus HOM05D005735 ORTHO05D006547 1.9e-08 62.8 37 78.4
CANSAT35G0868 Cannabis sativa HOM05D005735 ORTHO05D006547 1.9e-08 62.8 37 78.4
CANSAT35G1842 Cannabis sativa HOM05D005735 ORTHO05D006547 1.9e-08 62.8 37 78.4
HanXRQChr04g0124581 Helianthus annuus HOM05D005735 ORTHO05D006547 1.9e-08 62.8 41 73.2
Lalb_Chr24g0401021 Lupinus albus HOM05D005735 ORTHO05D006547 1.9e-08 62.8 37 75.7
Nn2g13495 Nelumbo nucifera HOM05D005735 ORTHO05D006547 1.9e-08 62.8 37 78.4
Psat7g240200 Pisum sativum HOM05D005735 ORTHO05D006547 1.9e-08 62.8 37 81.1
FAN09G1978 Fragaria x ananassa HOM05D005735 ORTHO05D006547 2.5e-08 62.4 37 78.4
Lj2A88G66 Lonicera japonica HOM05D005735 ORTHO05D006547 2.5e-08 62.4 37 81.1
MBI14_g09010_MAGBIO Magnolia biondii HOM05D005735 ORTHO05D006547 2.5e-08 62.4 49 63.3
Sc01g0004650 Simmondsia chinensis HOM05D005735 ORTHO05D006547 2.5e-08 62.4 37 78.4
BraA07t29866Z Brassica rapa HOM05D005735 ORTHO05D006547 3.2e-08 62.0 37 75.7
CAN.G208.27 Capsicum annuum HOM05D005735 ORTHO05D006547 3.2e-08 62.0 35 85.7
CARHR163810 Cardamine hirsuta HOM05D005735 ORTHO05D006547 3.2e-08 62.0 37 75.7
Lalb_Chr22g0358651 Lupinus albus HOM05D005735 ORTHO05D006547 3.2e-08 62.0 37 78.4
SGA_v2.0_scaffold75G24970 Striga asiatica HOM05D005735 ORTHO05D006547 3.2e-08 62.0 45 66.7
arahy.Tifrunner.gnm1.ann1.879M1U Arachis hypogaea HOM05D005735 ORTHO05D006547 4.2e-08 61.6 37 75.7
arahy.Tifrunner.gnm1.ann1.ECZP7J Arachis hypogaea HOM05D005735 ORTHO05D006547 4.2e-08 61.6 37 75.7
Thhalv10010595m.g Eutrema salsugineum HOM05D005735 ORTHO05D006547 7.1e-08 60.8 37 75.7
QL07p028744 Quercus lobata HOM05D005735 ORTHO05D006547 7.1e-08 60.8 37 81.1
THA.LOC104805616 Tarenaya hassleriana HOM05D005735 ORTHO05D006547 7.1e-08 60.8 37 78.4
Lsat_1_v5_gn_8_84641 Lactuca sativa HOM05D005735 ORTHO05D006547 9.3e-08 60.5 37 75.7
ATR0559G328 Amborella trichopoda HOM05D005735 ORTHO05D006547 1.6e-07 59.7 53 56.6
VMungo0331G1562 Vigna mungo HOM05D005735 ORTHO05D006547 1.6e-07 59.7 37 70.3
DCAR_028771 Daucus carota HOM05D005735 ORTHO05D006547 2.1e-07 59.3 37 75.7
TWI77G0204 Tripterygium wilfordii HOM05D005735 ORTHO05D006547 2.1e-07 59.3 37 81.1
Os05g0455700 Oryza sativa ssp. japonica HOM05D005735 ORTHO05D006547 2.7e-07 58.9 37 73.0
Aqoxy2G02353 Aquilegia oxysepala HOM05D005735 ORTHO05D006547 3.5e-07 58.5 37 75.7
HPP92_027961 Vanilla planifolia HOM05D005735 ORTHO05D006547 3.5e-07 58.5 37 75.7
Zm00001eb289550 Zea mays HOM05D005735 ORTHO05D006547 3.5e-07 58.5 57 56.1
Mapoly0035s0109 Marchantia polymorpha HOM05D005735 ORTHO05D006547 4.6e-07 58.2 37 73.0
CBR_g17719 Chara braunii HOM05D005735 ORTHO05D006547 1.0e-06 57.0 56 48.2
Zm00001eb412190 Zea mays HOM05D005735 ORTHO05D006547 3.0e-06 55.5 49 51.0
Pp3c9_24300 Physcomitrium patens HOM05D005735 ORTHO05D006547 3.9e-06 55.1 48 58.3
SMO147G0009 Selaginella moellendorffii HOM05D005735 ORTHO05D006547 5.1e-06 54.7 49 55.1
AagrBONN_evm.TU.Sc2ySwM_228.3184 Anthoceros agrestis HOM05D005735 ORTHO05D006547 8.7e-06 53.9 45 62.2


User provided reference genes

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