Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 9.8e-200 699.9 346 100.0
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 2.0e-189 665.6 347 95.1
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 1.1e-187 659.8 347 93.9
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 3.3e-187 658.3 346 93.6
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 1.8e-185 652.5 349 92.8
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 4.6e-181 637.9 346 90.8
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 3.1e-169 598.6 347 85.6
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 1.0e-164 583.6 333 86.8
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 1.3e-164 583.2 329 86.9
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 3.0e-164 582.0 333 85.9
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 1.1e-163 580.1 342 83.9
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 3.3e-163 578.6 333 85.6
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 2.1e-162 575.9 335 85.4
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 8.1e-162 573.9 330 85.2
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 3.1e-161 572.0 325 87.7
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 4.0e-161 571.6 321 87.9
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 4.0e-161 571.6 331 85.8
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 9.0e-161 570.5 326 86.5
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 1.5e-160 569.7 324 86.1
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 4.5e-160 568.2 326 86.5
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 5.8e-160 567.8 332 84.3
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 5.8e-160 567.8 333 84.7
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 1.3e-159 566.6 333 82.0
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 1.7e-159 566.2 326 86.5
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 3.8e-159 565.1 326 85.0
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 6.4e-159 564.3 333 83.5
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 5.4e-158 561.2 332 84.0
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 7.1e-158 560.8 339 83.2
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 7.1e-158 560.8 339 83.5
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 2.7e-157 558.9 337 84.0
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.7e-157 558.9 337 84.0
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 3.5e-157 558.5 328 83.8
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 3.5e-157 558.5 332 83.7
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 7.9e-157 557.4 332 81.6
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 1.3e-156 556.6 325 82.2
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 1.8e-156 556.2 337 80.7
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 1.8e-156 556.2 332 83.4
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 3.0e-156 555.4 333 80.8
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 3.0e-156 555.4 337 80.7
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 3.9e-156 555.1 334 82.9
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 6.7e-156 554.3 322 84.5
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 6.7e-156 554.3 322 84.5
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 1.1e-155 553.5 368 76.4
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 5.6e-155 551.2 319 85.0
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 5.6e-155 551.2 332 81.0
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 7.4e-155 550.8 331 81.0
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 1.3e-154 550.1 319 84.0
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 1.6e-154 549.7 334 82.6
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 1.6e-154 549.7 319 84.6
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 2.8e-154 548.9 319 85.0
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 4.8e-154 548.1 325 81.8
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 4.8e-154 548.1 334 78.7
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 6.2e-154 547.7 319 84.6
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 1.4e-153 546.6 323 82.7
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 2.6e-152 542.3 337 76.9
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 2.6e-152 542.3 321 83.2
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 2.6e-152 542.3 333 79.3
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 3.4e-152 542.0 329 80.9
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 3.4e-152 542.0 333 79.6
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 4.5e-152 541.6 341 79.2
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 4.5e-152 541.6 341 77.1
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 5.8e-152 541.2 330 81.2
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 9.9e-152 540.4 322 79.8
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 1.3e-151 540.0 332 81.0
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 1.7e-151 539.7 342 77.8
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 1.7e-151 539.7 326 80.7
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 8.4e-151 537.3 335 78.8
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 7.9e-149 530.8 321 81.9
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 1.8e-148 529.6 345 74.8
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 5.1e-148 528.1 325 79.1
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 1.5e-147 526.6 327 78.6
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 1.5e-147 526.6 326 75.8
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 1.9e-147 526.2 331 77.3
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 4.3e-147 525.0 325 77.8
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 4.3e-147 525.0 328 78.7
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 5.6e-147 524.6 322 78.9
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 1.3e-146 523.5 322 78.3
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 2.1e-146 522.7 337 76.3
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 2.8e-146 522.3 325 79.1
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 8.2e-146 520.8 267 94.8
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 3.1e-145 518.8 335 76.7
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 4.0e-145 518.5 322 78.0
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 4.0e-145 518.5 267 94.4
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 9.0e-145 517.3 346 74.6
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 2.0e-144 516.2 328 77.1
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 2.0e-144 516.2 328 77.1
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 2.0e-144 516.2 346 74.3
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 1.7e-143 513.1 320 78.1
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 3.8e-143 511.9 328 76.8
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 8.4e-143 510.8 329 73.9
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 4.2e-142 508.4 298 85.9
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 6.7e-140 501.1 301 81.7
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 6.7e-140 501.1 328 76.8
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 7.4e-139 497.7 305 80.0
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 6.3e-138 494.6 328 73.5
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 1.4e-137 493.4 292 83.2
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 5.3e-137 491.5 365 67.4
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 2.2e-135 486.1 323 73.4
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 8.5e-135 484.2 302 78.1
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 1.0e-132 477.2 290 79.7
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 2.3e-132 476.1 330 76.1
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.9e-131 473.0 267 88.0
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 6.3e-130 468.0 255 88.2
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 3.8e-127 458.8 256 86.7
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 7.9e-125 451.1 351 66.7
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 8.8e-124 447.6 349 67.6
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 2.1e-117 426.4 285 75.8
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 1.5e-110 403.7 225 87.1
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 2.7e-109 399.4 227 87.7
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 4.4e-107 392.1 338 60.1
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 8.2e-106 387.9 327 59.9
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 2.5e-102 376.3 321 59.8
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 3.7e-90 335.9 187 86.6
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 1.4e-84 317.4 166 92.2
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 4.4e-83 312.4 359 49.6
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 1.1e-81 307.8 277 62.5
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 5.6e-78 295.4 208 66.8
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 4.6e-64 249.2 146 82.2
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 6.0e-64 248.8 211 59.7
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 2.4e-60 236.9 216 62.0
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 2.0e-51 207.2 315 45.1
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 1.4e-49 201.1 195 56.9
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 6.0e-48 195.7 312 36.9
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 7.8e-48 195.3 248 44.8
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 5.6e-46 189.1 411 32.6
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 1.3e-39 167.9 114 72.8
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 1.9e-38 164.1 322 37.0
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 1.1e-36 158.3 229 47.6
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 1.2e-35 154.8 108 69.4
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 9.7e-22 108.6 57 91.2
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 5.3e-20 102.8 250 33.6
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 1.6e-16 91.3 98 50.0
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 1.0e-15 88.6 45 88.9
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 1.3e-13 81.6 69 60.9
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 2.0e-11 74.3 78 51.3
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 2.1e-08 64.3 30 86.7
Nitab4.5_0016721g0010 Nicotiana tabacum HOM05D002908 ORTHO05D283189 7.9e-08 62.4 75 56.0
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 2.6e-06 57.4 36 77.8


User provided reference genes

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