Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 1.9e-110 402.5 201 100.0
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 6.3e-106 387.5 201 96.0
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 6.3e-106 387.5 201 96.0
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.8e-103 378.3 201 93.5
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 5.0e-103 377.9 201 93.5
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 1.9e-102 375.9 192 96.9
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 5.5e-102 374.4 201 92.5
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 7.9e-101 370.5 201 93.5
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 1.6e-80 303.1 202 72.3
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 2.0e-80 302.8 202 71.3
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 7.7e-80 300.8 202 70.8
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 2.2e-79 299.3 202 69.8
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 2.2e-79 299.3 202 72.8
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 2.2e-79 299.3 202 70.8
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 3.8e-79 298.5 201 73.1
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 8.5e-79 297.4 202 69.8
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 8.5e-79 297.4 202 70.8
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 8.5e-79 297.4 202 70.8
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 1.5e-78 296.6 201 72.6
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 2.1e-77 292.7 202 70.8
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 4.7e-77 291.6 202 73.8
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 8.0e-77 290.8 200 72.0
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 1.0e-76 290.4 202 69.3
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 1.4e-76 290.0 202 70.8
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.4e-76 290.0 202 69.8
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 2.3e-76 289.3 202 71.8
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 3.0e-76 288.9 200 67.5
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 3.0e-76 288.9 202 68.3
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 3.0e-76 288.9 202 71.3
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 5.2e-76 288.1 193 71.0
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 5.2e-76 288.1 201 68.2
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 8.8e-76 287.3 201 68.2
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 8.8e-76 287.3 202 71.8
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 3.3e-75 285.4 202 70.8
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 3.3e-75 285.4 202 68.8
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 4.4e-75 285.0 199 71.9
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 4.4e-75 285.0 199 69.8
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 9.7e-75 283.9 202 69.8
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 1.3e-74 283.5 201 67.7
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 1.3e-74 283.5 201 67.7
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 1.3e-74 283.5 193 69.9
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 2.2e-74 282.7 202 67.8
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 1.1e-73 280.4 199 70.9
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.4e-73 280.0 193 73.6
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 1.8e-73 279.6 202 69.3
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 3.1e-73 278.9 201 68.2
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 1.6e-72 276.6 201 69.7
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 2.0e-72 276.2 193 67.9
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 2.0e-72 276.2 201 68.2
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 2.7e-72 275.8 202 66.8
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 2.9e-71 272.3 201 65.2
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 5.0e-71 271.6 201 66.7
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 1.5e-70 270.0 199 66.8
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 1.9e-70 269.6 194 64.9
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 2.5e-70 269.2 199 67.3
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 2.5e-70 269.2 199 66.8
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 3.2e-70 268.9 201 64.7
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.2e-70 268.9 199 65.8
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 3.2e-70 268.9 199 66.8
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 4.2e-70 268.5 186 72.6
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 4.2e-70 268.5 193 65.3
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 5.5e-70 268.1 201 65.7
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 1.2e-69 266.9 201 65.2
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 1.2e-69 266.9 192 68.2
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 6.1e-69 264.6 201 63.2
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 1.0e-68 263.8 194 63.9
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 1.8e-68 263.1 193 66.8
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 3.0e-68 262.3 201 63.7
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 6.8e-68 261.2 201 63.2
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 2.0e-67 259.6 199 63.8
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.6e-67 259.2 193 65.8
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 3.4e-67 258.8 267 52.8
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 4.4e-67 258.5 193 65.8
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 9.8e-67 257.3 201 62.7
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 3.1e-65 252.3 201 63.7
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 1.2e-64 250.4 197 59.9
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.0e-64 249.6 201 63.2
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.0e-64 249.6 201 63.2
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 3.5e-64 248.8 198 62.6
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 7.7e-64 247.7 201 63.2
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 1.7e-63 246.5 201 60.2
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 6.6e-63 244.6 228 57.0
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 8.6e-63 244.2 201 61.7
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 5.5e-62 241.5 197 57.9
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 7.2e-62 241.1 199 60.3
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 1.2e-61 240.4 201 62.7
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 1.6e-61 240.0 199 58.3
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.6e-61 240.0 199 59.3
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 8.0e-61 237.7 251 52.2
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 1.4e-60 236.9 234 55.6
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 3.0e-60 235.7 176 64.8
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 3.0e-60 235.7 233 54.1
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 1.2e-59 233.8 228 54.4
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 1.5e-59 233.4 227 55.9
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 1.5e-59 233.4 196 59.2
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 1.5e-59 233.4 197 55.8
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 5.7e-59 231.5 228 54.4
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 7.5e-59 231.1 201 55.2
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 8.3e-58 227.6 191 58.6
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 2.4e-57 226.1 146 76.0
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 4.5e-56 221.9 209 57.9
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 2.3e-55 219.5 201 59.2
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 8.6e-55 217.6 234 49.1
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 3.3e-54 215.7 234 50.4
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 7.3e-54 214.5 191 55.5
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 7.3e-54 214.5 115 93.9
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 7.3e-54 214.5 232 50.4
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 1.6e-53 213.4 234 50.0
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 2.8e-53 212.6 234 49.6
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 3.6e-53 212.2 145 71.0
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 2.3e-52 209.5 150 66.7
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 4.0e-52 208.8 172 57.6
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 1.2e-51 207.2 154 65.6
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 1.5e-51 206.8 110 90.0
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 2.6e-51 206.1 154 64.3
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 9.2e-49 197.6 198 48.5
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 3.5e-48 195.7 256 44.1
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 1.1e-46 190.7 192 47.9
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 1.1e-46 190.7 138 67.4
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 3.3e-46 189.1 146 63.7
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 7.3e-46 188.0 206 49.5
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 1.2e-45 187.2 194 51.0
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 6.8e-44 181.4 193 53.4
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 3.4e-43 179.1 148 62.8
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 4.9e-42 175.3 177 55.4
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 6.4e-42 174.9 202 43.6
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 6.4e-42 174.9 202 43.6
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 8.3e-42 174.5 199 49.2
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.4e-41 173.7 201 48.3
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 7.0e-41 171.4 86 96.5
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 2.7e-40 169.5 129 63.6
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 1.0e-39 167.5 197 44.7
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 2.3e-39 166.4 181 51.4
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 4.3e-38 162.2 198 41.9
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 4.3e-38 162.2 152 53.3
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 4.0e-36 155.6 111 64.9
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 5.2e-36 155.2 192 45.3
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.2e-35 154.1 121 59.5
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 1.7e-34 150.2 115 63.5
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 4.1e-33 145.6 201 41.3
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 4.6e-32 142.1 115 62.6
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 3.3e-30 136.0 198 38.9
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 3.6e-29 132.5 153 49.7
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 4.7e-29 132.1 197 34.5
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 2.0e-27 126.7 115 55.7
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.3e-26 124.0 125 49.6
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 2.2e-26 123.2 82 74.4
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 1.0e-23 114.4 199 39.2
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 3.3e-22 109.4 189 39.7
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 3.5e-16 89.4 205 29.3
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 6.0e-16 88.6 207 28.5
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.3e-15 87.4 65 66.2
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.0e-15 86.3 58 74.1
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 1.8e-12 77.0 68 52.9
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 7.9e-08 61.6 49 51.0
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 6.7e-07 58.5 182 25.3


User provided reference genes

Program Settings