Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 7.6e-135 483.8 238 100.0
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 3.0e-131 471.9 238 96.6
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 1.4e-109 399.8 228 83.3
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 4.2e-109 398.3 228 83.3
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 9.4e-109 397.1 228 82.9
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 4.4e-98 361.7 244 72.1
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.4e-93 346.7 240 71.2
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 2.5e-93 345.9 240 70.4
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 3.7e-89 332.0 232 69.0
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.1e-88 330.5 240 67.1
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 1.1e-88 330.5 239 66.9
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.4e-88 330.1 240 67.5
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 7.0e-88 327.8 240 66.2
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 1.0e-86 323.9 240 65.8
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.0e-86 323.9 230 70.0
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 3.8e-86 322.0 240 66.2
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 8.5e-86 320.9 232 65.1
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 6.1e-84 314.7 241 63.1
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.4e-83 313.5 241 63.5
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 3.0e-83 312.4 240 63.8
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 6.7e-83 311.2 234 65.0
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 2.0e-82 309.7 234 64.5
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.3e-82 308.9 243 64.2
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 2.2e-81 306.2 230 63.5
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.6e-79 300.1 240 60.0
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 2.0e-79 299.7 242 60.7
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 2.7e-79 299.3 240 59.2
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 4.5e-79 298.5 236 61.4
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.3e-78 297.0 234 62.8
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 2.9e-78 295.8 240 58.3
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 6.5e-78 294.7 237 60.3
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 1.2e-76 290.4 240 60.0
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 2.1e-76 289.7 240 60.0
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 4.0e-75 285.4 244 57.4
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 4.0e-75 285.4 244 57.4
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.2e-75 285.0 238 58.0
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.2e-75 285.0 238 58.0
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.8e-75 284.6 238 58.0
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 8.8e-75 284.3 238 58.0
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 2.0e-74 283.1 238 58.8
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 2.0e-74 283.1 244 56.6
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 3.4e-74 282.3 238 58.8
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.7e-74 281.6 238 57.6
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 3.7e-73 278.9 244 55.7
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 3.7e-73 278.9 230 57.0
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 4.8e-73 278.5 240 56.7
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 1.4e-72 276.9 200 66.0
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 5.4e-72 275.0 237 57.0
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.7e-71 272.7 238 55.9
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 4.5e-71 271.9 232 58.2
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 5.9e-71 271.6 225 59.1
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.9e-71 271.6 238 52.9
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 1.1e-69 267.3 211 64.5
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 1.5e-69 266.9 235 55.3
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 9.5e-69 264.2 238 55.0
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 3.6e-68 262.3 237 54.0
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 6.1e-68 261.5 238 54.2
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 3.0e-67 259.2 240 52.5
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 6.8e-67 258.1 238 53.8
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 2.6e-66 256.1 238 55.0
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 2.6e-66 256.1 215 57.7
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 3.4e-66 255.8 238 53.4
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 1.7e-65 253.4 236 53.8
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 6.3e-65 251.5 240 52.5
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 6.3e-65 251.5 228 53.9
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 6.3e-65 251.5 231 52.4
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 5.4e-64 248.4 236 51.3
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 7.0e-64 248.1 238 51.3
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 9.2e-64 247.7 240 51.2
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.2e-63 247.3 239 51.0
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.2e-63 247.3 239 51.0
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 5.9e-63 245.0 236 52.1
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 7.8e-63 244.6 225 52.0
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 7.8e-63 244.6 236 50.4
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 1.0e-62 244.2 240 51.7
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 1.0e-62 244.2 234 55.1
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.3e-62 243.8 231 52.4
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 8.6e-62 241.1 238 50.4
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.9e-61 240.0 230 52.6
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 1.9e-61 240.0 241 52.7
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 3.6e-60 235.7 235 49.4
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 4.7e-60 235.3 242 50.0
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 1.0e-59 234.2 201 55.7
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.8e-59 233.4 231 50.2
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 4.0e-59 232.3 230 52.2
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 6.8e-59 231.5 233 50.2
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 6.8e-59 231.5 238 48.3
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.2e-58 230.7 231 49.8
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.2e-58 230.7 241 49.8
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 1.5e-58 230.3 225 51.6
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 2.6e-58 229.6 229 48.9
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 7.5e-58 228.0 241 47.3
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 7.5e-58 228.0 234 50.0
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.3e-57 227.3 231 47.6
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.3e-57 227.3 232 48.7
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.7e-57 225.7 232 47.4
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 3.7e-57 225.7 231 49.4
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.1e-56 224.2 198 53.5
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 1.4e-56 223.8 197 56.9
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 3.2e-56 222.6 240 46.2
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 4.1e-56 222.2 232 47.8
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 1.6e-55 220.3 230 46.5
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 1.6e-55 220.3 230 46.5
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 2.0e-55 219.9 231 50.2
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 2.0e-55 219.9 233 47.6
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 1.7e-54 216.9 230 45.2
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.7e-54 216.9 235 48.5
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 2.3e-54 216.5 230 45.2
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 2.3e-54 216.5 230 45.2
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 3.9e-54 215.7 154 61.7
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 5.0e-54 215.3 230 44.8
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 6.6e-54 214.9 233 48.1
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.1e-53 214.2 217 51.2
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 1.5e-53 213.8 233 46.4
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 2.5e-53 213.0 234 45.7
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.6e-52 210.3 154 59.7
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 2.8e-52 209.5 225 48.9
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 1.1e-51 207.6 241 43.2
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 2.3e-51 206.5 237 44.7
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 4.0e-51 205.7 225 45.3
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 4.0e-51 205.7 233 45.5
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 5.2e-51 205.3 194 51.0
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 6.8e-51 204.9 232 46.6
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 4.4e-50 202.2 226 46.9
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 5.8e-50 201.8 228 46.1
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.3e-49 200.7 207 49.8
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 1.7e-49 200.3 229 45.4
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.7e-49 200.3 211 49.3
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 8.3e-49 198.0 232 46.6
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 1.1e-48 197.6 234 44.4
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.4e-48 197.2 211 48.8
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 2.3e-46 189.9 227 44.9
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 3.9e-46 189.1 232 41.8
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.5e-45 186.4 213 47.9
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 1.6e-44 183.7 217 43.8
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 2.1e-44 183.3 226 44.7
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 2.8e-44 183.0 240 43.3
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 3.6e-44 182.6 165 52.1
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 5.2e-43 178.7 152 55.3
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 1.5e-42 177.2 178 47.8
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 3.4e-42 176.0 218 40.4
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 3.4e-42 176.0 231 42.0
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 3.4e-42 176.0 231 42.0
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 3.4e-42 176.0 181 48.1
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 5.8e-42 175.3 155 54.2
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 5.8e-42 175.3 214 38.3
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 5.8e-42 175.3 214 38.8
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 2.9e-41 172.9 147 56.5
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 6.4e-41 171.8 122 65.6
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 2.4e-40 169.9 237 35.4
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 2.1e-39 166.8 169 50.9
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 1.1e-37 161.0 227 38.3
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 5.6e-37 158.7 117 65.8
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 9.5e-37 157.9 225 37.8
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.2e-36 157.5 144 52.8
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.7e-36 155.6 203 43.8
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 6.8e-35 151.8 223 37.7
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 7.6e-34 148.3 192 37.5
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 4.6e-31 139.0 206 43.7
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 1.0e-30 137.9 110 61.8
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 5.6e-29 132.1 139 46.8
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 3.1e-27 126.3 135 50.4
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.0e-27 125.9 145 46.2
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 4.2e-24 115.9 88 59.1
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 3.5e-23 112.8 91 59.3
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 4.6e-23 112.5 83 66.3
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 8.7e-22 108.2 92 54.3
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.5e-21 107.5 124 44.4
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 1.2e-18 97.8 78 53.8
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.4e-18 96.3 92 46.7
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.3e-17 94.4 217 32.3
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 4.9e-17 92.4 80 53.8
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 5.4e-16 89.0 165 31.5
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 1.2e-15 87.8 116 38.8
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 3.5e-15 86.3 100 41.0
Thecc.03G134500 Theobroma cacao HOM05D003762 ORTHO05D004374 4.6e-15 85.9 171 39.2
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 1.3e-12 77.8 66 51.5
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 3.7e-12 76.3 99 39.4
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 9.0e-11 71.6 113 38.9
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 2.6e-10 70.1 78 38.5
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.6e-07 60.8 76 44.7
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 2.1e-07 60.5 66 50.0


User provided reference genes

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