Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 6.7e-119 430.6 210 100.0
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 2.6e-94 349.0 211 77.7
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 2.2e-93 345.9 211 77.3
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 7.3e-89 330.9 211 78.2
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 6.1e-88 327.8 211 78.2
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 1.1e-79 300.4 217 67.7
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 3.4e-78 295.4 180 78.9
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 7.8e-75 284.3 179 74.3
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 1.7e-74 283.1 211 64.0
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 6.6e-74 281.2 211 60.7
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.8e-72 275.8 211 63.0
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.6e-72 275.4 211 63.0
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 3.6e-72 275.4 211 59.2
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 4.0e-71 271.9 209 63.6
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 5.2e-71 271.6 211 60.2
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 1.2e-70 270.4 212 60.4
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 3.4e-70 268.9 209 63.2
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 5.8e-70 268.1 210 63.8
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 7.5e-70 267.7 211 61.6
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 2.2e-69 266.2 211 61.6
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 3.7e-69 265.4 213 63.4
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 1.9e-68 263.1 211 61.1
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 2.4e-68 262.7 210 62.4
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 3.2e-68 262.3 212 60.4
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 5.4e-68 261.5 211 60.7
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 7.1e-68 261.2 211 59.2
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 7.1e-68 261.2 211 59.7
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.6e-67 260.0 211 60.7
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 4.6e-67 258.5 213 57.7
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 2.3e-66 256.1 211 60.2
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 2.3e-66 256.1 211 59.2
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 3.9e-66 255.4 211 57.8
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 6.6e-66 254.6 211 57.8
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 8.6e-66 254.2 209 58.4
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 5.6e-65 251.5 211 56.9
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 1.6e-64 250.0 212 61.3
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 1.6e-64 250.0 212 55.7
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 2.8e-64 249.2 211 57.3
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 8.1e-64 247.7 211 59.7
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.1e-63 247.3 209 57.4
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 1.1e-63 247.3 211 59.7
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 1.8e-63 246.5 212 60.4
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 8.9e-63 244.2 214 56.1
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 1.2e-62 243.8 211 54.5
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 1.5e-62 243.4 211 57.3
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 5.8e-62 241.5 211 56.4
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 7.6e-62 241.1 211 57.8
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 1.3e-61 240.4 194 59.8
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 1.7e-61 240.0 211 57.3
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 2.9e-61 239.2 211 56.4
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 8.4e-61 237.7 213 55.9
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 1.1e-60 237.3 197 59.9
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 1.9e-60 236.5 199 57.3
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 2.4e-60 236.1 211 57.3
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 4.2e-60 235.3 214 56.1
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.2e-60 235.3 211 57.3
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 7.1e-60 234.6 201 57.2
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 9.3e-60 234.2 195 57.9
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 1.6e-59 233.4 196 58.2
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 2.1e-59 233.0 211 55.9
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 3.5e-59 232.3 212 53.8
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 1.0e-58 230.7 212 56.6
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.3e-58 230.3 210 57.1
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.7e-58 229.9 217 53.9
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.7e-58 229.9 212 56.6
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.7e-58 229.9 212 56.1
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 2.3e-58 229.6 213 53.1
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 3.0e-58 229.2 215 55.8
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 3.0e-58 229.2 211 54.5
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 6.6e-58 228.0 209 56.5
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 6.6e-58 228.0 209 56.0
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 6.6e-58 228.0 213 54.5
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.5e-57 226.9 212 55.7
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 1.9e-57 226.5 214 55.6
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.9e-57 226.5 217 52.5
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 7.3e-57 224.6 229 52.4
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 9.6e-57 224.2 211 53.1
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 9.6e-57 224.2 213 54.0
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 1.3e-56 223.8 198 57.6
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 2.1e-56 223.0 213 52.6
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 2.1e-56 223.0 211 53.1
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 3.6e-56 222.2 213 52.6
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 8.1e-56 221.1 211 53.1
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 1.4e-55 220.3 211 53.6
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 4.4e-54 215.3 201 54.2
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 7.6e-54 214.5 211 50.2
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.3e-53 213.8 213 53.1
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 1.7e-53 213.4 213 51.2
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 1.7e-53 213.4 203 54.2
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 2.9e-53 212.6 209 49.8
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 4.9e-53 211.8 214 50.0
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.1e-52 210.7 213 51.2
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 1.1e-52 210.7 210 50.5
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.4e-52 210.3 206 51.9
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 1.4e-52 210.3 195 54.9
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.4e-52 210.3 206 51.9
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.4e-52 210.3 196 55.6
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 1.9e-52 209.9 211 49.8
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 1.9e-52 209.9 211 49.8
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 1.9e-52 209.9 211 49.8
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.9e-52 209.9 211 52.1
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 2.4e-52 209.5 213 52.6
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 4.2e-52 208.8 212 49.5
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 5.4e-52 208.4 212 49.5
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 7.1e-52 208.0 213 49.3
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 9.3e-52 207.6 213 49.8
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 2.7e-51 206.1 213 49.8
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 2.7e-51 206.1 215 47.9
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 2.7e-51 206.1 215 47.9
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 7.8e-51 204.5 210 48.6
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 1.7e-50 203.4 212 48.1
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 2.3e-50 203.0 180 56.7
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 3.0e-50 202.6 215 47.9
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 3.0e-50 202.6 215 47.9
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.1e-49 200.7 195 52.8
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.5e-49 200.3 213 47.9
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.9e-49 199.9 164 59.8
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 3.3e-49 199.1 188 52.1
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 5.6e-49 198.4 197 48.2
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 9.6e-49 197.6 197 48.7
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 9.6e-49 197.6 213 46.9
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 1.3e-48 197.2 211 46.4
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.1e-48 196.4 186 54.3
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 2.1e-48 196.4 212 46.7
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 8.1e-48 194.5 235 43.4
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 8.1e-48 194.5 236 44.1
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 8.1e-48 194.5 236 44.5
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 1.4e-47 193.7 198 51.0
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 1.8e-47 193.4 216 50.5
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 4.0e-47 192.2 199 50.3
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 2.6e-46 189.5 201 47.3
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 3.4e-46 189.1 213 46.9
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 4.5e-46 188.7 180 53.9
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 2.2e-45 186.4 197 49.7
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 3.8e-45 185.7 172 55.2
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.1e-44 184.1 211 48.3
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 2.4e-44 183.0 222 44.6
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.2e-44 182.6 213 44.6
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 1.2e-43 180.6 231 42.9
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 2.7e-43 179.5 258 41.1
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 1.0e-42 177.6 181 50.8
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 1.3e-42 177.2 210 43.8
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.8e-42 176.8 215 44.2
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 6.2e-40 168.3 217 46.1
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 9.0e-39 164.5 150 52.0
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 2.1e-35 153.3 167 49.1
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 4.6e-35 152.1 180 46.7
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 2.3e-34 149.8 192 44.3
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 3.0e-34 149.4 171 43.9
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 5.1e-34 148.7 210 41.9
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 4.3e-33 145.6 179 45.3
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 2.8e-32 142.9 219 40.6
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 3.7e-32 142.5 210 39.0
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 4.5e-30 135.6 209 38.3
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 3.8e-29 132.5 96 63.5
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 4.2e-28 129.0 288 29.2
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 5.5e-28 128.6 74 81.1
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 2.1e-27 126.7 240 35.0
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 3.0e-26 122.9 160 42.5
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 1.1e-25 120.9 300 27.7
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 4.3e-25 119.0 81 69.1
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 7.4e-25 118.2 149 43.0
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 6.3e-24 115.2 156 42.3
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 2.6e-22 109.8 85 62.4
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 4.5e-22 109.0 131 45.0
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 1.0e-21 107.8 132 45.5
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 1.7e-21 107.1 183 34.4
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 2.2e-21 106.7 87 57.5
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 2.7e-19 99.8 126 41.3
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 1.0e-18 97.8 210 31.0
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 1.0e-18 97.8 95 47.4
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.0e-18 97.8 198 35.4
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 1.8e-18 97.1 64 75.0
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 5.1e-18 95.5 71 64.8
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-13 80.9 127 36.2
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 5.0e-13 79.0 60 58.3
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 6.5e-13 78.6 141 36.2
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 2.6e-09 66.6 46 65.2
GSVIVG01033244001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.1e-07 61.2 65 50.8
Actinidia09310 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.4e-07 60.8 44 61.4
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 4.1e-07 59.3 61 55.7
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 7.0e-07 58.5 52 53.8


User provided reference genes

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