Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 7.9e-172 607.1 315 100.0
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 3.0e-163 578.6 315 93.3
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 2.5e-162 575.5 315 92.4
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 2.5e-162 575.5 315 93.0
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 1.6e-161 572.8 315 93.7
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 8.7e-155 550.4 315 89.2
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 4.4e-146 521.5 316 83.2
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 9.7e-146 520.4 316 82.0
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 4.5e-143 511.5 316 81.6
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 1.0e-142 510.4 314 82.5
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 1.1e-141 506.9 316 80.7
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 1.9e-141 506.1 312 80.8
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 9.4e-141 503.8 314 80.9
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 4.7e-140 501.5 314 80.9
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 1.0e-139 500.4 313 79.6
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 5.2e-139 498.0 316 78.5
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 2.0e-138 496.1 315 79.4
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 2.0e-138 496.1 312 78.5
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 4.4e-138 495.0 312 80.1
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 2.2e-137 492.7 316 78.5
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 2.8e-137 492.3 313 78.0
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 8.2e-137 490.7 316 77.2
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 1.1e-136 490.3 313 80.8
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 1.8e-136 489.6 314 77.4
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 1.2e-135 486.9 299 80.3
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 1.6e-135 486.5 314 78.0
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 4.5e-135 485.0 316 76.3
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 1.0e-134 483.8 315 77.1
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 2.2e-134 482.6 314 75.5
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 2.9e-134 482.3 313 77.3
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 1.5e-133 479.9 316 75.3
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 1.9e-133 479.6 316 77.2
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 3.2e-133 478.8 313 76.7
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 3.2e-133 478.8 314 76.1
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 4.2e-133 478.4 318 76.4
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 5.5e-133 478.0 314 76.1
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 5.5e-133 478.0 314 75.5
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 9.4e-133 477.2 341 71.6
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 1.2e-132 476.9 313 75.4
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 1.2e-132 476.9 314 76.1
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 1.2e-132 476.9 314 77.1
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 1.2e-132 476.9 315 76.8
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 2.1e-132 476.1 315 76.8
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 2.7e-132 475.7 314 75.2
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 3.6e-132 475.3 314 76.1
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 6.1e-132 474.6 318 75.8
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 8.0e-132 474.2 313 77.3
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 1.4e-131 473.4 316 75.6
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 1.8e-131 473.0 314 76.1
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 1.8e-131 473.0 314 75.5
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 2.3e-131 472.6 314 76.4
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 2.3e-131 472.6 314 76.1
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 3.0e-131 472.2 312 75.0
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 3.0e-131 472.2 316 73.1
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 3.0e-131 472.2 316 75.0
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 3.0e-131 472.2 313 77.3
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 5.2e-131 471.5 314 76.1
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 5.2e-131 471.5 318 75.5
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 8.8e-131 470.7 328 77.4
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 1.5e-130 469.9 316 72.5
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 2.0e-130 469.5 315 73.0
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 3.3e-130 468.8 313 75.4
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 3.3e-130 468.8 311 77.2
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 4.4e-130 468.4 315 73.0
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 1.7e-129 466.5 314 75.8
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 2.8e-129 465.7 316 73.7
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 6.3e-129 464.5 315 73.7
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 3.1e-128 462.2 313 74.1
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 3.1e-128 462.2 293 77.1
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 3.1e-128 462.2 314 72.9
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 4.1e-128 461.8 300 73.7
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 7.0e-128 461.1 315 73.0
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 1.2e-127 460.3 316 72.2
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 1.2e-127 460.3 316 72.2
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 1.2e-127 460.3 340 70.0
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 2.0e-127 459.5 316 71.8
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 2.7e-127 459.1 329 71.1
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.7e-127 459.1 329 71.1
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.7e-127 459.1 329 71.1
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 3.5e-127 458.8 316 71.8
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 4.5e-127 458.4 313 73.2
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 4.5e-127 458.4 316 71.5
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 4.5e-127 458.4 313 73.5
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 4.5e-127 458.4 314 72.6
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 1.0e-126 457.2 320 73.8
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 2.2e-126 456.1 305 76.4
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 3.8e-126 455.3 329 70.2
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 1.1e-125 453.8 316 70.9
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 1.5e-125 453.4 329 69.9
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 1.9e-125 453.0 313 71.6
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 2.5e-125 452.6 315 71.4
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 4.2e-125 451.8 317 71.9
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 7.2e-125 451.1 293 75.4
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 9.4e-125 450.7 339 69.0
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 1.6e-124 449.9 317 71.9
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 2.1e-124 449.5 299 72.6
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 2.1e-124 449.5 318 71.7
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 3.6e-124 448.7 299 72.6
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 3.6e-124 448.7 299 72.6
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 4.7e-124 448.4 299 72.2
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 2.3e-123 446.0 317 71.3
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 2.3e-123 446.0 294 76.2
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 4.0e-123 445.3 312 72.8
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 6.8e-123 444.5 269 80.3
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 1.5e-122 443.4 313 71.6
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 2.0e-122 443.0 312 72.8
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 2.6e-122 442.6 312 72.4
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 4.4e-122 441.8 310 71.3
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 1.3e-121 440.3 286 74.5
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 2.8e-121 439.1 313 71.9
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 6.3e-121 438.0 257 82.1
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 1.2e-119 433.7 314 67.8
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 2.9e-118 429.1 313 70.6
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 8.6e-118 427.6 291 70.1
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 7.2e-117 424.5 342 66.1
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 9.2e-112 407.5 253 77.1
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 2.7e-111 406.0 315 64.4
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 1.0e-110 404.1 316 64.6
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 3.4e-98 362.5 313 61.7
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 4.4e-98 362.1 313 61.7
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 3.7e-97 359.0 233 74.2
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 9.2e-96 354.4 311 57.9
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 1.3e-94 350.5 223 78.0
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 4.0e-91 339.0 228 76.3
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 3.7e-89 332.4 314 56.4
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 1.9e-88 330.1 320 53.4
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 1.1e-83 314.3 276 60.5
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 6.8e-83 311.6 313 53.4
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 6.0e-79 298.5 307 50.2
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 2.8e-76 289.7 275 54.2
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 1.0e-70 271.2 308 49.4
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 2.8e-68 263.1 311 51.1
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 1.6e-63 247.3 296 46.3
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 4.0e-51 206.1 302 41.4
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 6.0e-47 192.2 173 61.8
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 4.2e-40 169.5 104 76.0
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 6.1e-31 139.0 90 77.8
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 3.9e-30 136.3 93 74.2
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 2.6e-29 133.7 94 69.1
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 1.2e-23 114.8 116 61.2
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 1.4e-22 111.3 79 69.6
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 8.2e-20 102.1 90 63.3
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 8.2e-20 102.1 90 63.3
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 2.7e-15 87.0 90 55.6
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 3.7e-12 76.6 99 53.5


User provided reference genes

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