Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1650.6 841 100.0
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1505.0 841 91.2
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1488.0 841 89.7
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1486.9 855 88.5
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1479.9 841 89.1
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1458.0 841 86.7
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1447.2 841 86.3
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1347.4 848 81.2
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1337.4 851 80.7
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1337.4 853 79.8
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1332.4 846 80.9
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1331.6 841 81.1
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1321.6 848 78.8
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1318.5 869 78.7
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1317.0 868 78.7
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1317.0 856 78.0
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1314.7 869 78.0
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1312.7 881 76.6
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1312.0 856 79.2
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1311.6 850 79.1
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1308.1 861 78.0
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1303.9 869 77.6
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1301.2 817 80.4
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1291.6 850 77.4
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1290.0 911 74.5
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1287.3 888 74.7
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1285.0 872 76.4
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1284.2 842 78.0
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1282.3 847 77.3
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1281.9 926 72.0
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1280.0 840 77.0
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1279.6 897 74.2
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1276.9 859 76.4
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1276.2 914 73.2
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1274.6 849 77.0
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1273.5 877 74.9
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1272.7 857 76.1
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1271.9 860 75.8
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1270.4 895 73.7
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1269.6 849 77.0
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1268.4 900 73.0
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1268.4 859 75.6
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1268.1 879 74.9
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1267.7 900 73.3
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1263.8 871 75.9
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1262.7 898 73.2
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1260.7 902 72.4
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1258.4 849 75.4
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1256.9 906 72.6
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1256.9 891 73.1
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1250.0 733 83.9
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1247.3 860 72.9
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1246.1 840 76.7
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1245.0 872 73.6
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1243.0 888 72.7
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1242.3 917 70.0
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1237.6 880 73.3
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1237.6 903 72.0
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1237.2 864 73.6
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1237.2 887 71.9
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1236.9 903 72.0
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1236.9 861 75.0
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1236.1 870 72.9
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1236.1 878 72.0
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1233.8 861 74.9
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1233.0 903 71.7
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1231.5 870 73.0
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1229.9 888 72.3
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1228.8 903 71.8
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1227.6 905 71.4
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1226.5 904 71.0
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1225.3 867 73.2
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1222.2 834 75.5
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1220.3 905 70.1
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1217.2 921 69.9
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1216.8 868 73.2
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1216.1 910 70.3
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1216.1 922 69.2
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1216.1 865 73.2
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1209.9 917 69.7
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1208.7 871 72.1
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1201.8 818 75.9
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1199.1 879 72.1
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1198.3 866 72.6
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1197.2 891 70.7
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1196.8 942 67.3
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1195.3 802 75.9
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1194.5 933 67.3
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1192.2 872 72.1
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1191.0 891 70.5
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1191.0 864 72.7
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1188.7 874 71.6
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1184.1 877 70.5
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1179.1 895 70.2
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1178.3 853 70.5
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1177.2 822 73.8
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1176.8 839 73.7
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1167.9 943 66.7
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1166.4 938 67.8
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1165.6 835 71.5
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1162.1 892 68.0
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1157.5 893 69.3
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1155.2 893 69.1
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1140.2 813 74.0
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1140.2 846 68.2
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1133.2 1000 62.0
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 0.0e+00 1125.9 843 69.9
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 0.0e+00 1113.6 817 69.8
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 0.0e+00 1100.5 826 68.2
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1088.2 838 65.6
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 6.1e-304 1047.3 852 65.5
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 1.6e-296 1022.7 902 63.4
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 7.7e-291 1003.8 714 72.1
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 1.1e-284 983.4 721 72.3
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 1.8e-284 982.6 858 64.7
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 1.1e-281 973.4 689 74.5
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 1.4e-279 966.5 704 71.2
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 2.2e-277 959.1 961 58.5
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 3.0e-271 938.7 834 57.1
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 4.0e-271 938.3 593 78.2
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.0e-262 909.4 505 85.7
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 2.9e-261 905.6 899 54.6
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 4.7e-256 888.3 832 57.2
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 8.1e-248 860.9 687 66.5
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 1.3e-189 667.5 612 59.5
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.7e-184 650.6 352 90.6
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 6.3e-184 648.7 509 69.2
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 4.1e-175 619.4 451 67.8
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 1.6e-174 617.5 371 78.2
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.0e-169 600.5 341 81.2
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.5e-164 584.3 526 63.7
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.3e-164 583.2 360 76.7
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 4.5e-158 562.8 465 64.9
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 2.7e-142 510.4 729 44.0
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 7.3e-140 502.3 483 61.1
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 1.2e-139 501.5 833 38.4
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 1.4e-135 488.0 978 35.6
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 7.8e-126 455.7 305 72.5
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.3e-117 428.3 438 59.8
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 1.1e-116 425.2 297 71.4
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 8.4e-104 382.5 1023 30.4
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 5.3e-98 363.2 608 40.8
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 5.1e-93 346.7 334 65.6
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 9.7e-76 289.3 165 82.4
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 3.8e-56 224.2 330 42.4
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 1.3e-51 209.1 150 81.3
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 5.7e-44 183.7 104 82.7
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 4.7e-38 164.1 107 74.8
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.4e-37 162.5 107 70.1
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 5.0e-32 144.1 115 63.5
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 3.1e-21 108.2 86 64.0
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 2.0e-20 105.5 77 70.1
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 9.9e-20 103.2 61 82.0
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 5.4e-18 97.4 96 62.5
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.4e-13 82.8 57 71.9
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.8e-13 82.4 94 48.9
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 4.0e-13 81.3 66 59.1
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 6.8e-13 80.5 94 48.9
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.2e-12 79.7 45 84.4
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 5.4e-10 70.9 53 71.7
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 1.0e-08 66.6 58 60.3
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 1.3e-08 66.2 52 63.5
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 3.9e-08 64.7 40 72.5
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 2.1e-06 58.9 47 68.1


User provided reference genes

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