Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G014600 Theobroma cacao HOM05D001831 ORTHO05D029131 5.5e-40 167.2 83 100.0
Thecc.05G014700 Theobroma cacao HOM05D001831 ORTHO05D029131 8.8e-22 106.7 81 69.1
Thecc.10G118200 Theobroma cacao HOM05D001831 ORTHO05D029131 1.6e-18 95.9 67 68.7
Ciclev10022027m.g Citrus clementina HOM05D001831 ORTHO05D001835 6.5e-17 90.5 67 67.2
Aa31LG2G980 Aethionema arabicum HOM05D001831 ORTHO05D001835 1.3e-12 76.3 60 58.3
Thecc.03G281900 Theobroma cacao HOM05D001831 ORTHO05D001835 4.8e-12 74.3 65 56.9
Atru.chr9.2157 Acer truncatum HOM05D001831 ORTHO05D001835 8.3e-12 73.6 69 50.7
Manes.02G021494 Manihot esculenta HOM05D001831 ORTHO05D001835 8.3e-12 73.6 58 60.3
Duzib068G0782 Durio zibethinus HOM05D001831 ORTHO05D001835 1.1e-11 73.2 88 47.7
Manes.01G060300 Manihot esculenta HOM05D001831 ORTHO05D001835 1.8e-11 72.4 60 60.0
Potri.003G130100 Populus trichocarpa HOM05D001831 ORTHO05D001835 1.8e-11 72.4 69 58.0
Cpa.g.sc214.7 Carica papaya HOM05D001831 ORTHO05D001835 4.1e-11 71.2 64 57.8
TWI38G0047 Tripterygium wilfordii HOM05D001831 ORTHO05D001835 4.1e-11 71.2 69 50.7
Potri.001G101600 Populus trichocarpa HOM05D001831 ORTHO05D001835 5.4e-11 70.9 66 57.6
Gorai.008G248200 Gossypium raimondii HOM05D001831 ORTHO05D001835 7.0e-11 70.5 86 45.3
Gohir.D09G186400 Gossypium hirsutum HOM05D001831 ORTHO05D001835 9.1e-11 70.1 69 50.7
Gohir.A12G230800 Gossypium hirsutum HOM05D001831 ORTHO05D001835 1.2e-10 69.7 86 45.3
GSVIVG01019388001 Vitis vinifera HOM05D001831 ORTHO05D001835 1.2e-10 69.7 60 61.7
Gorai.006G209100 Gossypium raimondii HOM05D001831 ORTHO05D001835 1.6e-10 69.3 65 52.3
COL.COLO4_14520 Corchorus olitorius HOM05D001831 ORTHO05D029131 4.5e-10 67.8 67 52.2
Gohir.D03G149800 Gossypium hirsutum HOM05D001831 ORTHO05D001835 4.5e-10 67.8 81 48.1
QL12p032462 Quercus lobata HOM05D001831 ORTHO05D001835 4.5e-10 67.8 67 56.7
Duzib205G0405 Durio zibethinus HOM05D001831 ORTHO05D001835 5.9e-10 67.4 86 45.3
MD06G1087400 Malus domestica HOM05D001831 ORTHO05D001835 5.9e-10 67.4 63 52.4
Gohir.A09G192100 Gossypium hirsutum HOM05D001831 ORTHO05D001835 7.7e-10 67.0 69 47.8
Sabra03G0092500 Salix brachista HOM05D001831 ORTHO05D001835 7.7e-10 67.0 67 55.2
Gorai.003G157100 Gossypium raimondii HOM05D001831 ORTHO05D001835 1.0e-09 66.6 81 46.9
MD14G1108300 Malus domestica HOM05D001831 ORTHO05D001835 1.3e-09 66.2 63 52.4
Prupe.5G103700 Prunus persica HOM05D001831 ORTHO05D001835 1.3e-09 66.2 63 50.8
Gohir.A03G019200 Gossypium hirsutum HOM05D001831 ORTHO05D001835 2.9e-09 65.1 61 54.1
Sabra01G0076600 Salix brachista HOM05D001831 ORTHO05D001835 2.9e-09 65.1 66 53.0
Cfa012205 Carpinus fangiana HOM05D001831 ORTHO05D001835 5.0e-09 64.3 70 50.0
PGR031G2081 Punica granatum HOM05D001831 ORTHO05D001835 6.5e-09 63.9 68 48.5
PGR042G1581 Punica granatum HOM05D001831 ORTHO05D001835 6.5e-09 63.9 63 55.6
RcHm_v2.0_Chr7g0197141 Rosa chinensis HOM05D001831 ORTHO05D001835 6.5e-09 63.9 66 48.5
CiPaw.12G091400 Carya illinoinensis HOM05D001831 ORTHO05D001835 8.5e-09 63.5 70 51.4
Haze_08808 Corylus avellana HOM05D001831 ORTHO05D001835 8.5e-09 63.5 62 51.6
Hma1.2p1_0377F.1_g139420 Hydrangea macrophylla HOM05D001831 ORTHO05D001835 1.5e-08 62.8 66 53.0
CANSAT21G0650 Cannabis sativa HOM05D001831 ORTHO05D001835 1.9e-08 62.4 70 45.7
MSTRG.13850 Avicennia marina HOM05D001831 ORTHO05D001835 2.5e-08 62.0 66 47.0
Dinv37621 Davidia involucrata HOM05D001831 ORTHO05D001835 3.2e-08 61.6 63 50.8
Eucgr.D01830 Eucalyptus grandis HOM05D001831 ORTHO05D001835 3.2e-08 61.6 59 55.9
FvH4_5g02810 Fragaria vesca HOM05D001831 ORTHO05D001835 4.2e-08 61.2 66 45.5
MELO3C016365.2 Cucumis melo HOM05D001831 ORTHO05D001835 5.5e-08 60.8 62 48.4
CsaV3_4G005860 Cucumis sativus L. HOM05D001831 ORTHO05D001835 7.2e-08 60.5 62 48.4
MSTRG.1855 Avicennia marina HOM05D001831 ORTHO05D001835 9.4e-08 60.1 61 47.5
THA.LOC104823590 Tarenaya hassleriana HOM05D001831 ORTHO05D001835 9.4e-08 60.1 82 39.0
ECA240G2159 Erigeron canadensis HOM05D001831 ORTHO05D001835 1.2e-07 59.7 71 45.1
Migut.E01074 Erythranthe guttata HOM05D001831 ORTHO05D001835 1.2e-07 59.7 65 46.2
Sed0000036 Sechium edule HOM05D001831 ORTHO05D001835 1.2e-07 59.7 62 46.8
Dinv38924 Davidia involucrata HOM05D001831 ORTHO05D001835 2.7e-07 58.5 60 51.7
Lsat_1_v5_gn_3_6221 Lactuca sativa HOM05D001831 ORTHO05D001835 3.6e-07 58.2 62 45.2
CiPaw.11G132800 Carya illinoinensis HOM05D001831 ORTHO05D001835 6.1e-07 57.4 60 48.3
Hund14831 Selenicereus undatus HOM05D001831 ORTHO05D001835 6.1e-07 57.4 60 50.0
SGA_v2.0_scaffold144G35912 Striga asiatica HOM05D001831 ORTHO05D001835 6.1e-07 57.4 56 44.6
HanXRQChr17g0533501 Helianthus annuus HOM05D001831 ORTHO05D001835 8.0e-07 57.0 68 39.7
Nitab4.5_0001522g0050 Nicotiana tabacum HOM05D001831 ORTHO05D001835 8.0e-07 57.0 60 48.3
EL10Ac5g12801 Beta vulgaris HOM05D001831 ORTHO05D001835 1.0e-06 56.6 61 52.5
HanXRQChr13g0416051 Helianthus annuus HOM05D001831 ORTHO05D001835 1.0e-06 56.6 70 40.0
Peaxi162Scf00074g02027 Petunia axillaris HOM05D001831 ORTHO05D001835 1.0e-06 56.6 60 48.3
Sc07g0009800 Simmondsia chinensis HOM05D001831 ORTHO05D001835 1.0e-06 56.6 64 43.8
TAR629G1175 Trochodendron aralioides HOM05D001831 ORTHO05D001835 1.0e-06 56.6 59 49.2
MSTRG.11973 Avicennia marina HOM05D001831 ORTHO05D001835 1.4e-06 56.2 66 43.9
HanXRQChr06g0165931 Helianthus annuus HOM05D001831 ORTHO05D001835 1.4e-06 56.2 88 35.2
AUR62010712 Chenopodium quinoa HOM05D001831 ORTHO05D001835 2.3e-06 55.5 60 51.7
Cc08_g14970 Coffea canephora HOM05D001831 ORTHO05D001835 2.3e-06 55.5 59 47.5
COL.COLO4_34494 Corchorus olitorius HOM05D001831 ORTHO05D001835 2.3e-06 55.5 39 71.8
Lsat_1_v5_gn_6_86341 Lactuca sativa HOM05D001831 ORTHO05D001835 2.3e-06 55.5 66 43.9
Nitab4.5_0013970g0010 Nicotiana tabacum HOM05D001831 ORTHO05D001835 3.0e-06 55.1 60 46.7
Solyc08g081310.4 Solanum lycopersicum HOM05D001831 ORTHO05D001835 3.0e-06 55.1 60 46.7
Sopen08g029620 Solanum pennellii HOM05D001831 ORTHO05D001835 3.0e-06 55.1 60 46.7
PGSC0003DMG400012195 Solanum tuberosum HOM05D001831 ORTHO05D001835 3.0e-06 55.1 60 46.7
HPP92_025968 Vanilla planifolia HOM05D001831 ORTHO05D001835 3.0e-06 55.1 69 42.0
CSS0030172 Camellia sinensis var. sinensis HOM05D001831 ORTHO05D001835 4.0e-06 54.7 64 43.8
CAN.G532.5 Capsicum annuum HOM05D001831 ORTHO05D001835 4.0e-06 54.7 63 44.4
DCAR_008368 Daucus carota HOM05D001831 ORTHO05D001835 4.0e-06 54.7 60 48.3
SalBow1G2216 Salvia bowleyana HOM05D001831 ORTHO05D001835 4.0e-06 54.7 63 42.9
CSS0024339 Camellia sinensis var. sinensis HOM05D001831 ORTHO05D001835 6.8e-06 53.9 60 46.7
CSS0004031 Camellia sinensis var. sinensis HOM05D001831 ORTHO05D001835 8.8e-06 53.5 64 43.8


User provided reference genes

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