Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1905.2 959 100.0
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1619.4 959 85.5
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1614.4 959 85.3
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1612.0 959 85.0
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1494.2 963 77.8
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1459.5 911 79.5
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1453.0 959 76.5
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1452.6 908 79.1
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1443.7 908 78.3
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1441.8 937 77.2
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1438.3 965 75.5
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1425.2 963 74.2
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1425.2 914 77.6
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1420.2 962 74.6
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1411.0 910 77.4
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 0.0e+00 1409.8 962 76.8
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1408.7 917 77.0
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1403.7 973 73.2
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1402.9 972 73.4
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1398.3 961 73.0
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1394.0 998 71.5
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1391.7 913 76.0
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1391.3 972 72.8
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1388.6 913 75.8
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1385.9 881 77.4
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1384.0 914 74.8
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1382.9 899 77.3
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1382.9 961 72.3
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1382.9 960 72.2
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1381.3 886 77.0
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1378.6 942 73.1
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1377.5 943 73.7
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1377.5 880 76.8
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1374.0 881 76.2
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1373.6 920 73.9
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1373.2 961 71.7
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1365.1 903 75.7
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1364.4 962 73.0
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1363.2 940 72.6
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1362.8 1004 69.6
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1361.7 962 71.6
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1361.7 908 74.2
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1361.3 897 74.1
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1361.3 917 73.8
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1360.5 896 75.1
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1359.7 893 75.8
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1359.4 915 73.8
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1359.0 893 74.8
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1352.8 906 73.6
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1346.3 984 69.4
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1346.3 943 72.1
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1345.5 902 74.1
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1344.3 885 74.8
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1340.9 934 72.1
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1328.5 922 71.6
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1320.1 946 71.2
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1316.2 919 72.8
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1315.8 941 71.5
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1313.5 963 70.8
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1307.7 968 68.6
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1306.6 809 79.9
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1300.0 811 79.5
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1300.0 954 70.4
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1295.0 901 72.0
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1291.9 959 68.8
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1286.2 927 70.2
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1280.4 839 74.5
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1273.1 938 70.5
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1260.7 918 69.3
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1255.7 959 68.4
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1249.6 915 69.0
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1249.2 958 67.0
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1245.0 930 67.4
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1244.2 875 70.9
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1243.4 915 68.5
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1241.9 960 66.1
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1236.9 901 70.0
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1236.1 915 68.5
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1235.3 925 68.8
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1228.4 902 69.1
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1228.4 896 68.4
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1219.9 896 68.1
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1215.7 933 66.3
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 0.0e+00 1207.6 944 66.1
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1207.2 900 68.0
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1207.2 911 67.3
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1204.1 940 65.9
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1201.8 892 67.8
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 0.0e+00 1191.8 882 66.8
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 0.0e+00 1164.1 896 64.6
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 0.0e+00 1162.5 878 65.4
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1154.8 938 64.9
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 0.0e+00 1138.6 813 70.2
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1088.2 940 61.0
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 3.2e-293 1011.9 789 65.9
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 5.0e-286 988.0 708 68.9
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 5.9e-279 964.5 886 55.4
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 1.9e-269 932.9 941 50.9
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 1.1e-261 907.1 683 68.2
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 1.2e-258 897.1 598 73.2
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 2.9e-257 892.5 648 71.8
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.1e-251 874.0 600 74.0
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 6.4e-249 864.8 590 74.4
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 2.7e-215 753.1 561 67.9
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 5.1e-214 748.8 915 47.0
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 5.6e-213 745.3 512 74.0
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 3.7e-204 716.1 890 48.0
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 8.2e-204 714.9 442 78.5
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 3.3e-197 693.0 534 65.4
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 5.1e-190 669.1 726 49.2
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 6.7e-190 668.7 667 53.4
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 1.6e-183 647.5 394 79.9
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 6.1e-183 645.6 419 74.7
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 1.1e-134 485.3 341 72.7
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 6.8e-126 456.1 265 82.6
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 9.0e-110 402.5 290 70.7
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 9.6e-104 382.5 313 65.8
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 3.9e-97 360.5 337 59.1
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 5.5e-91 340.1 216 79.2
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 2.9e-84 317.8 238 65.5
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 1.1e-67 262.7 172 72.7
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 7.0e-62 243.4 247 52.6
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 1.7e-55 222.2 217 52.1
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 2.4e-46 191.8 228 52.6
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 3.7e-39 167.9 166 59.6
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 2.5e-35 155.2 98 77.6
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-25 120.9 271 35.4
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 2.2e-23 115.5 82 68.3
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 2.3e-20 105.5 405 23.7
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 8.6e-20 103.6 89 61.8
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 2.1e-18 99.0 58 82.8
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 1.4e-14 86.3 69 63.8
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 3.4e-08 65.1 112 36.6
QL06p031927 Quercus lobata HOM05D005896 ORTHO05D007250 9.9e-08 63.5 52 61.5
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 3.8e-07 61.6 37 81.1
TAR381G1729 Trochodendron aralioides HOM05D000406 ORTHO05D002714 5.4e-06 57.8 31 83.9


User provided reference genes

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