Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G285900 Theobroma cacao HOM05D001999 ORTHO05D001994 1.7e-176 622.5 299 100.0
Thecc.04G286000 Theobroma cacao HOM05D001999 ORTHO05D001994 1.2e-39 167.9 206 50.0
COL.COLO4_13852 Corchorus olitorius HOM05D001999 ORTHO05D044710 3.2e-21 106.7 323 32.8
Prupe.1G134800 Prunus persica HOM05D001999 ORTHO05D001994 8.1e-17 92.0 113 45.1
Manes.03G196300 Manihot esculenta HOM05D001999 ORTHO05D001994 8.9e-16 88.6 259 27.8
COL.COLO4_23755 Corchorus olitorius HOM05D001999 ORTHO05D044710 9.9e-15 85.1 357 28.9
Cfa015396 Carpinus fangiana HOM05D001999 ORTHO05D001994 2.1e-12 77.4 83 47.0
Aa31LG5G15830 Aethionema arabicum HOM05D001999 ORTHO05D001994 3.0e-11 73.6 237 26.6
MD13G1167400 Malus domestica HOM05D001999 ORTHO05D001994 5.1e-11 72.8 66 48.5
TAR362G0062 Trochodendron aralioides HOM05D001999 ORTHO05D001994 6.6e-11 72.4 98 40.8
QL06p009106 Quercus lobata HOM05D001999 ORTHO05D001994 8.7e-11 72.0 83 42.2
ATR0796G022 Amborella trichopoda HOM05D001999 ORTHO05D001994 1.5e-10 71.2 82 43.9
PGSC0003DMG400024717 Solanum tuberosum HOM05D001999 ORTHO05D001994 2.5e-10 70.5 111 38.7
Solyc01g099790.3 Solanum lycopersicum HOM05D001999 ORTHO05D001994 3.3e-10 70.1 111 37.8
Sopen01g043310 Solanum pennellii HOM05D001999 ORTHO05D001994 3.3e-10 70.1 111 37.8
Sp3g04390 Schrenkiella parvula HOM05D001999 ORTHO05D001994 4.3e-10 69.7 89 41.6
THA.LOC104802795 Tarenaya hassleriana HOM05D001999 ORTHO05D001994 4.3e-10 69.7 108 37.0
CSS0046081 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 5.6e-10 69.3 110 38.2
Nn4g25807 Nelumbo nucifera HOM05D001999 ORTHO05D001994 7.3e-10 68.9 109 37.6
Ciclev10001227m.g Citrus clementina HOM05D001999 ORTHO05D001994 9.6e-10 68.6 105 38.1
Thhalv10020788m.g Eutrema salsugineum HOM05D001999 ORTHO05D001994 9.6e-10 68.6 89 40.4
TAR365G1043 Trochodendron aralioides HOM05D001999 ORTHO05D001994 9.6e-10 68.6 105 36.2
AL4G47270 Arabidopsis lyrata HOM05D001999 ORTHO05D001994 2.1e-09 67.4 116 33.6
BcaB04g19258 Brassica carinata HOM05D001999 ORTHO05D001994 2.1e-09 67.4 108 38.9
AT3G05545 Arabidopsis thaliana HOM05D001999 ORTHO05D001994 2.8e-09 67.0 89 40.4
Glyma.19G232800 Glycine max HOM05D001999 ORTHO05D001994 2.8e-09 67.0 107 35.5
Lalb_Chr15g0077401 Lupinus albus HOM05D001999 ORTHO05D001994 2.8e-09 67.0 152 29.6
Nitab4.5_0010216g0020 Nicotiana tabacum HOM05D001999 ORTHO05D001994 2.8e-09 67.0 76 46.1
Oeu010920.1 Olea europaea HOM05D001999 ORTHO05D001994 2.8e-09 67.0 78 46.2
FAN09G2669 Fragaria x ananassa HOM05D001999 ORTHO05D001994 3.6e-09 66.6 85 43.5
Psat0s1500g0040 Pisum sativum HOM05D001999 ORTHO05D001994 4.8e-09 66.2 114 36.8
PGR031G0021 Punica granatum HOM05D001999 ORTHO05D001994 4.8e-09 66.2 108 37.0
unitig_52.g17384 Utricularia gibba HOM05D001999 ORTHO05D001994 4.8e-09 66.2 104 37.5
AT2G47700 Arabidopsis thaliana HOM05D001999 ORTHO05D001994 6.2e-09 65.9 76 43.4
Carub.0004s3042 Capsella rubella HOM05D001999 ORTHO05D001994 6.2e-09 65.9 116 32.8
A03p34190 Brassica napus HOM05D001999 ORTHO05D001994 8.1e-09 65.5 75 44.0
BolC3t16439H Brassica oleracea HOM05D001999 ORTHO05D001994 8.1e-09 65.5 75 44.0
BraA03t12593Z Brassica rapa HOM05D001999 ORTHO05D001994 8.1e-09 65.5 75 44.0
Mapoly0004s0157 Marchantia polymorpha HOM05D001999 ORTHO05D001994 8.1e-09 65.5 154 30.5
TAR636G1732 Trochodendron aralioides HOM05D001999 ORTHO05D001994 8.1e-09 65.5 78 41.0
AL3G16160 Arabidopsis lyrata HOM05D001999 ORTHO05D001994 1.1e-08 65.1 89 39.3
CARHR079940 Cardamine hirsuta HOM05D001999 ORTHO05D001994 1.1e-08 65.1 89 41.6
Ciclev10006312m.g Citrus clementina HOM05D001999 ORTHO05D034791 1.1e-08 65.1 55 47.3
Rhsim05G0138600 Rhododendron simsii HOM05D001999 ORTHO05D001994 1.1e-08 65.1 76 44.7
C03p41580 Brassica napus HOM05D001999 ORTHO05D001994 1.4e-08 64.7 75 44.0
Carub.0003s0484 Capsella rubella HOM05D001999 ORTHO05D001994 1.4e-08 64.7 89 39.3
HanXRQChr05g0136211 Helianthus annuus HOM05D001999 ORTHO05D001994 1.4e-08 64.7 79 44.3
Aa31LG1G29020 Aethionema arabicum HOM05D001999 ORTHO05D001994 1.8e-08 64.3 76 43.4
BcaC05g30112 Brassica carinata HOM05D001999 ORTHO05D001994 1.8e-08 64.3 75 44.0
BolC5t34826H Brassica oleracea HOM05D001999 ORTHO05D001994 1.8e-08 64.3 75 44.0
Haze_04134 Corylus avellana HOM05D001999 ORTHO05D001994 1.8e-08 64.3 72 47.2
Lsat_1_v5_gn_7_72040 Lactuca sativa HOM05D001999 ORTHO05D001994 1.8e-08 64.3 98 39.8
BolC4t21664H Brassica oleracea HOM05D001999 ORTHO05D001994 2.4e-08 63.9 76 43.4
BcaB02g08752 Brassica carinata HOM05D001999 ORTHO05D001994 3.1e-08 63.5 74 44.6
BcaC02g12548 Brassica carinata HOM05D001999 ORTHO05D001994 3.1e-08 63.5 76 43.4
BcaC05g30158 Brassica carinata HOM05D001999 ORTHO05D001994 3.1e-08 63.5 75 42.7
A05p00260 Brassica napus HOM05D001999 ORTHO05D001994 3.1e-08 63.5 76 43.4
C04p00170 Brassica napus HOM05D001999 ORTHO05D001994 3.1e-08 63.5 76 43.4
BraA05t19023Z Brassica rapa HOM05D001999 ORTHO05D001994 3.1e-08 63.5 76 43.4
CiPaw.07G107800 Carya illinoinensis HOM05D001999 ORTHO05D001994 3.1e-08 63.5 81 42.0
unitig_0.g2317 Utricularia gibba HOM05D001999 ORTHO05D001994 3.1e-08 63.5 109 38.5
Nitab4.5_0003844g0010 Nicotiana tabacum HOM05D001999 ORTHO05D001994 4.0e-08 63.2 75 45.3
vmacro15001 Vaccinium macrocarpon HOM05D001999 ORTHO05D001994 4.0e-08 63.2 75 41.3
Actinidia21498 Actinidia chinensis HOM05D001999 ORTHO05D001994 5.3e-08 62.8 74 44.6
BraA05t19075Z Brassica rapa HOM05D001999 ORTHO05D001994 5.3e-08 62.8 73 43.8
ECA236G3557 Erigeron canadensis HOM05D001999 ORTHO05D001994 5.3e-08 62.8 72 43.1
HanXRQChr04g0118031 Helianthus annuus HOM05D001999 ORTHO05D001994 5.3e-08 62.8 60 48.3
HanXRQChr09g0247921 Helianthus annuus HOM05D001999 ORTHO05D001994 5.3e-08 62.8 58 48.3
PGR004G2206 Punica granatum HOM05D001999 ORTHO05D001994 5.3e-08 62.8 54 55.6
Hund21714 Selenicereus undatus HOM05D001999 ORTHO05D001994 5.3e-08 62.8 62 48.4
CANSAT25G1967 Cannabis sativa HOM05D001999 ORTHO05D001994 9.0e-08 62.0 74 40.5
CANSAT25G3193 Cannabis sativa HOM05D001999 ORTHO05D001994 9.0e-08 62.0 74 40.5
Zm00001eb282730 Zea mays HOM05D001999 ORTHO05D001994 9.0e-08 62.0 109 37.6
BcaB04g21442 Brassica carinata HOM05D001999 ORTHO05D001994 1.2e-07 61.6 89 37.1
Sp4g29640 Schrenkiella parvula HOM05D001999 ORTHO05D001994 1.2e-07 61.6 76 42.1
TAR633G2461 Trochodendron aralioides HOM05D001999 ORTHO05D001994 1.2e-07 61.6 78 39.7
BcaC09g47839 Brassica carinata HOM05D001999 ORTHO05D001994 1.5e-07 61.2 89 37.1
BolC1t05690H Brassica oleracea HOM05D001999 ORTHO05D001994 1.5e-07 61.2 89 37.1
BraA01t04476Z Brassica rapa HOM05D001999 ORTHO05D001994 1.5e-07 61.2 89 37.1
Oeu043342.1 Olea europaea HOM05D001999 ORTHO05D001994 2.0e-07 60.8 97 38.1
TAR622G0837 Trochodendron aralioides HOM05D001999 ORTHO05D001994 2.6e-07 60.5 83 39.8
SMO165G0108 Selaginella moellendorffii HOM05D001999 ORTHO05D001994 3.4e-07 60.1 63 41.3
Aqoxy2G02961 Aquilegia oxysepala HOM05D001999 ORTHO05D001994 4.4e-07 59.7 78 41.0
THA.LOC104821725 Tarenaya hassleriana HOM05D001999 ORTHO05D001994 4.4e-07 59.7 55 49.1
PSO170G6103 Papaver somniferum HOM05D001999 ORTHO05D001994 5.8e-07 59.3 53 52.8
THA.LOC104817500 Tarenaya hassleriana HOM05D001999 ORTHO05D001994 5.8e-07 59.3 74 41.9
MD16G1167800 Malus domestica HOM05D001999 ORTHO05D001994 7.6e-07 58.9 52 51.9
THA.LOC104805890 Tarenaya hassleriana HOM05D001999 ORTHO05D001994 7.6e-07 58.9 84 40.5
PGSC0003DMG400029067 Solanum tuberosum HOM05D001999 ORTHO05D001994 9.9e-07 58.5 53 49.1
Gohir.D08G138700 Gossypium hirsutum HOM05D001999 ORTHO05D001994 1.3e-06 58.2 79 41.8
Os05g0154600 Oryza sativa ssp. japonica HOM05D001999 ORTHO05D001994 1.3e-06 58.2 240 27.5
Lsat_1_v5_gn_8_53500 Lactuca sativa HOM05D001999 ORTHO05D001994 1.7e-06 57.8 57 45.6
PSO210G6703 Papaver somniferum HOM05D001999 ORTHO05D001994 1.7e-06 57.8 53 50.9
ECA236G0210 Erigeron canadensis HOM05D001999 ORTHO05D001994 2.9e-06 57.0 57 45.6
Os01g0350900 Oryza sativa ssp. japonica HOM05D001999 ORTHO05D001994 2.9e-06 57.0 57 50.9
THA.LOC104818723 Tarenaya hassleriana HOM05D001999 ORTHO05D001994 4.9e-06 56.2 59 44.1
Haze_01190 Corylus avellana HOM05D001999 ORTHO05D001994 6.4e-06 55.8 125 29.6
Actinidia24344 Actinidia chinensis HOM05D001999 ORTHO05D001994 8.4e-06 55.5 53 49.1
AT4G13490 Arabidopsis thaliana HOM05D001999 ORTHO05D001994 8.4e-06 55.5 54 50.0
Nitab4.5_0001233g0060 Nicotiana tabacum HOM05D001999 ORTHO05D001994 8.4e-06 55.5 53 45.3


User provided reference genes

Program Settings