Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G271400 Theobroma cacao HOM05D002762 ORTHO05D008831 0.0e+00 1258.4 631 100.0
Gorai.006G255700 Gossypium raimondii HOM05D002762 ORTHO05D008831 0.0e+00 1163.3 631 91.3
Gohir.A09G231700 Gossypium hirsutum HOM05D002762 ORTHO05D008831 0.0e+00 1160.2 631 91.1
Gohir.D09G232800 Gossypium hirsutum HOM05D002762 ORTHO05D008831 0.0e+00 1160.2 631 91.1
Duzib052G0147 Durio zibethinus HOM05D002762 ORTHO05D008831 0.0e+00 1154.4 631 90.8
Duzib212G0752 Durio zibethinus HOM05D002762 ORTHO05D008831 0.0e+00 1149.4 631 90.6
COL.COLO4_13977 Corchorus olitorius HOM05D002762 ORTHO05D008831 0.0e+00 1123.2 631 88.7
Ciclev10004552m.g Citrus clementina HOM05D002762 ORTHO05D008831 3.1e-308 1061.2 631 82.1
QL06p006121 Quercus lobata HOM05D002762 ORTHO05D008831 4.0e-308 1060.8 626 82.9
Haze_01004 Corylus avellana HOM05D002762 ORTHO05D008831 2.7e-304 1048.1 675 77.6
GSVIVG01017858001 Vitis vinifera HOM05D002762 ORTHO05D008831 5.6e-302 1040.4 627 81.8
CSS0041967 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D008831 4.0e-300 1034.2 631 80.3
TWI53G0007 Tripterygium wilfordii HOM05D002762 ORTHO05D008831 2.2e-298 1028.5 629 80.9
TAR365G0003 Trochodendron aralioides HOM05D002762 ORTHO05D008831 1.4e-297 1025.8 627 80.9
CANSAT78G1603 Cannabis sativa HOM05D002762 ORTHO05D008831 6.8e-292 1006.9 634 78.2
Actinidia40215 Actinidia chinensis HOM05D002762 ORTHO05D008831 1.2e-291 1006.1 631 78.1
CSS0031724 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D008831 3.0e-287 991.5 610 80.3
Potri.010G028600 Populus trichocarpa HOM05D002762 ORTHO05D008831 5.6e-286 987.3 636 76.4
RcHm_v2.0_Chr4g0419641 Rosa chinensis HOM05D002762 ORTHO05D008831 5.6e-286 987.3 634 77.6
Manes.03G187600 Manihot esculenta HOM05D002762 ORTHO05D008831 2.8e-285 984.9 608 79.1
MD16G1180200 Malus domestica HOM05D002762 ORTHO05D008831 8.1e-285 983.4 632 76.1
Rhsim04G0212200 Rhododendron simsii HOM05D002762 ORTHO05D008831 9.0e-284 979.9 631 76.4
FvH4_4g14000 Fragaria vesca HOM05D002762 ORTHO05D008831 2.2e-282 975.3 632 76.7
FAN12G0174 Fragaria x ananassa HOM05D002762 ORTHO05D008831 3.2e-281 971.5 632 76.6
Phvul.003G097700 Phaseolus vulgaris HOM05D002762 ORTHO05D008831 2.7e-280 968.4 630 75.4
ClCG06G005650 Citrullus lanatus HOM05D002762 ORTHO05D008831 6.0e-280 967.2 631 75.6
Lj4g0021299 Lotus japonicus HOM05D002762 ORTHO05D008831 1.3e-279 966.1 631 75.3
Glyma.17G019900 Glycine max HOM05D002762 ORTHO05D008831 3.0e-279 964.9 629 75.4
CAN.G889.17 Capsicum annuum HOM05D002762 ORTHO05D008831 5.1e-279 964.1 631 74.3
FAN22G0551 Fragaria x ananassa HOM05D002762 ORTHO05D008831 3.3e-278 961.4 632 75.5
Solyc01g080360.3 Solanum lycopersicum HOM05D002762 ORTHO05D008831 4.3e-278 961.1 631 74.8
Sopen01g032170 Solanum pennellii HOM05D002762 ORTHO05D008831 5.6e-278 960.7 631 74.5
ATR0626G043 Amborella trichopoda HOM05D002762 ORTHO05D008831 4.8e-277 957.6 634 74.1
VMungo1215G1507 Vigna mungo HOM05D002762 ORTHO05D008831 8.1e-277 956.8 629 73.9
FAN07G1246 Fragaria x ananassa HOM05D002762 ORTHO05D008831 1.1e-276 956.4 632 75.6
MBI19_g15847_MAGBIO Magnolia biondii HOM05D002762 ORTHO05D008831 3.1e-276 954.9 629 75.4
CiPaw.01G157200 Carya illinoinensis HOM05D002762 ORTHO05D008831 1.2e-275 953.0 573 80.5
Lalb_Chr07g0177471 Lupinus albus HOM05D002762 ORTHO05D008831 2.2e-274 948.7 631 74.2
CsaV3_6G005500 Cucumis sativus L. HOM05D002762 ORTHO05D008831 2.9e-274 948.3 631 74.5
MSTRG.3975 Avicennia marina HOM05D002762 ORTHO05D008831 4.9e-274 947.6 627 73.4
TPR.G28123 Trifolium pratense HOM05D002762 ORTHO05D008831 1.9e-273 945.7 631 73.1
Sabra10G0012300 Salix brachista HOM05D002762 ORTHO05D008831 4.2e-273 944.5 643 73.4
Ca_21567_v3 Cicer arietinum L. HOM05D002762 ORTHO05D008831 1.2e-272 943.0 623 74.5
Psat4g031200 Pisum sativum HOM05D002762 ORTHO05D008831 1.2e-272 943.0 623 74.0
Medtr4g118010 Medicago truncatula HOM05D002762 ORTHO05D008831 6.0e-272 940.6 623 73.4
Migut.G00245 Erythranthe guttata HOM05D002762 ORTHO05D008831 1.8e-271 939.1 623 72.9
Migut.G00243 Erythranthe guttata HOM05D002762 ORTHO05D008831 3.0e-271 938.3 623 72.9
Sc19g0004720 Simmondsia chinensis HOM05D002762 ORTHO05D008831 6.7e-271 937.2 631 73.1
THA.LOC104802606 Tarenaya hassleriana HOM05D002762 ORTHO05D008831 6.7e-271 937.2 637 73.5
Nitab4.5_0000894g0020 Nicotiana tabacum HOM05D002762 ORTHO05D008831 1.9e-270 935.6 607 74.8
vmacro08246 Vaccinium macrocarpon HOM05D002762 ORTHO05D008831 5.6e-270 934.1 657 71.4
Cc03_g02810 Coffea canephora HOM05D002762 ORTHO05D008831 1.3e-269 932.9 632 72.9
arahy.Tifrunner.gnm1.ann1.08LYWQ Arachis hypogaea HOM05D002762 ORTHO05D008831 1.6e-269 932.6 632 73.1
DCAR_030580 Daucus carota HOM05D002762 ORTHO05D008831 6.9e-268 927.2 622 73.2
Oeu035631.1 Olea europaea HOM05D002762 ORTHO05D008831 9.0e-268 926.8 602 75.4
Aqoxy5G00558 Aquilegia oxysepala HOM05D002762 ORTHO05D008831 2.0e-267 925.6 630 72.1
EL10Ac8g18297 Beta vulgaris HOM05D002762 ORTHO05D008831 1.9e-265 919.1 627 72.4
Lj6A665G69 Lonicera japonica HOM05D002762 ORTHO05D008831 1.2e-264 916.4 666 70.4
Eucgr.F00974 Eucalyptus grandis HOM05D002762 ORTHO05D008831 2.1e-264 915.6 596 76.2
Sed0011257 Sechium edule HOM05D002762 ORTHO05D008831 1.3e-263 912.9 631 72.7
Nn4g26133 Nelumbo nucifera HOM05D002762 ORTHO05D008831 3.0e-263 911.8 591 75.6
Hund09035 Selenicereus undatus HOM05D002762 ORTHO05D008831 8.2e-261 903.7 629 71.4
arahy.Tifrunner.gnm1.ann1.ZAIR7G Arachis hypogaea HOM05D002762 ORTHO05D008831 9.0e-260 900.2 622 72.3
AUR62033230 Chenopodium quinoa HOM05D002762 ORTHO05D008831 2.6e-259 898.7 623 70.1
SGA_v2.0_scaffold237G43848 Striga asiatica HOM05D002762 ORTHO05D008831 5.8e-259 897.5 629 69.6
PSO210G2175 Papaver somniferum HOM05D002762 ORTHO05D008831 1.3e-255 886.3 627 68.3
AL3G53900 Arabidopsis lyrata HOM05D002762 ORTHO05D008831 3.0e-255 885.2 632 69.1
AT2G20790 Arabidopsis thaliana HOM05D002762 ORTHO05D008831 3.0e-255 885.2 628 70.1
HanXRQChr07g0192681 Helianthus annuus HOM05D002762 ORTHO05D008831 6.7e-255 884.0 628 71.3
PSO832G0886 Papaver somniferum HOM05D002762 ORTHO05D008831 1.9e-254 882.5 627 68.3
CARHR111460 Cardamine hirsuta HOM05D002762 ORTHO05D008831 3.7e-253 878.2 630 69.7
Peaxi162Scf00095g00610 Petunia axillaris HOM05D002762 ORTHO05D008831 6.3e-253 877.5 586 73.4
Nitab4.5_0000059g0110 Nicotiana tabacum HOM05D002762 ORTHO05D008831 3.4e-251 871.7 572 73.8
Aa31LG8G17700 Aethionema arabicum HOM05D002762 ORTHO05D008831 3.8e-250 868.2 635 67.9
Sp6g27240 Schrenkiella parvula HOM05D002762 ORTHO05D008831 7.2e-249 864.0 640 68.3
Lsat_1_v5_gn_6_14820 Lactuca sativa HOM05D002762 ORTHO05D008831 6.1e-248 860.9 622 70.1
Sed0022901 Sechium edule HOM05D002762 ORTHO05D008831 1.0e-247 860.1 627 70.0
C03p09290 Brassica napus HOM05D002762 ORTHO05D008831 3.9e-247 858.2 633 67.5
BolC3t13425H Brassica oleracea HOM05D002762 ORTHO05D008831 1.1e-246 856.7 633 67.6
A03p08030 Brassica napus HOM05D002762 ORTHO05D008831 3.7e-245 851.7 635 67.6
BraA03t10129Z Brassica rapa HOM05D002762 ORTHO05D008831 3.7e-245 851.7 635 67.6
CDE11G0719 Ceratophyllum demersum HOM05D002762 ORTHO05D008831 1.4e-244 849.7 627 67.3
Thhalv10003762m.g Eutrema salsugineum HOM05D002762 ORTHO05D008831 6.9e-244 847.4 632 67.2
AUR62021313 Chenopodium quinoa HOM05D002762 ORTHO05D008831 1.2e-243 846.7 589 70.3
HPP92_018399 Vanilla planifolia HOM05D002762 ORTHO05D008831 7.2e-241 837.4 629 66.5
ECA233G1162 Erigeron canadensis HOM05D002762 ORTHO05D008831 1.6e-240 836.3 631 67.7
Carub.0003s3536 Capsella rubella HOM05D002762 ORTHO05D008831 5.0e-234 814.7 564 71.3
Prupe.1G147800 Prunus persica HOM05D002762 ORTHO05D008831 8.8e-231 803.9 632 63.3
unitig_899.g14405 Utricularia gibba HOM05D002762 ORTHO05D008831 1.6e-219 766.5 602 62.5
Zm00001eb410820 Zea mays HOM05D002762 ORTHO05D008831 4.5e-219 765.0 625 61.3
MELO3C021387.2 Cucumis melo HOM05D002762 ORTHO05D008831 5.2e-207 724.9 455 78.9
Dinv38356 Davidia involucrata HOM05D002762 ORTHO05D008831 1.3e-205 720.3 440 79.8
Ah.09g229990 Amaranthus hybridus HOM05D002762 ORTHO05D008831 2.2e-189 666.4 447 72.7
Cfa015544 Carpinus fangiana HOM05D002762 ORTHO05D008831 2.3e-186 656.4 398 81.2
SEGI_30175 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 1.9e-185 653.3 491 65.4
SMO115G0172 Selaginella moellendorffii HOM05D002762 ORTHO05D008831 1.2e-184 650.6 632 52.8
Nn1g08335 Nelumbo nucifera HOM05D002762 ORTHO05D008831 1.5e-182 643.7 416 75.2
Mapoly0055s0097 Marchantia polymorpha HOM05D002762 ORTHO05D008831 2.8e-176 622.9 639 50.4
Eucgr.B01191 Eucalyptus grandis HOM05D002762 ORTHO05D008831 2.4e-159 566.6 418 69.1
AagrBONN_evm.TU.Sc2ySwM_368.1411 Anthoceros agrestis HOM05D002762 ORTHO05D008831 9.6e-153 544.7 597 47.1
SEGI_25743 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 8.1e-152 541.6 400 66.2
Pp3c2_12250 Physcomitrium patens HOM05D002762 ORTHO05D008831 7.6e-150 535.0 631 46.1
Cpa.g.sc16.61 Carica papaya HOM05D002762 ORTHO05D008831 9.0e-143 511.5 607 49.4
MD13G1179200 Malus domestica HOM05D002762 ORTHO05D008831 1.0e-133 481.5 417 63.5
CBR_g19730 Chara braunii HOM05D002762 ORTHO05D008831 9.1e-111 405.2 765 34.4
Actinidia23461 Actinidia chinensis HOM05D002762 ORTHO05D008831 2.5e-108 397.1 274 75.2
BcaB01g05249 Brassica carinata HOM05D002762 ORTHO05D008831 3.3e-52 210.7 182 58.2
Os12g0528300 Oryza sativa ssp. japonica HOM05D002762 ORTHO05D008831 1.6e-46 191.8 172 56.4
MD12G1098800 Malus domestica HOM05D002762 ORTHO05D008831 7.9e-46 189.5 214 47.2
SEGI_28752 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 9.6e-44 182.6 153 58.2
MD12G1098700 Malus domestica HOM05D002762 ORTHO05D008831 8.1e-43 179.5 163 57.7
Actinidia23460 Actinidia chinensis HOM05D002762 ORTHO05D030920 5.8e-33 146.7 82 84.1
COL.COLO4_28661 Corchorus olitorius HOM05D002762 ORTHO05D008831 3.3e-28 131.0 90 74.4
VMungo1215G0498 Vigna mungo HOM05D002762 ORTHO05D008831 6.5e-24 116.7 222 38.3
FAN17G1900 Fragaria x ananassa HOM05D002762 ORTHO05D030920 4.1e-18 97.4 55 85.5
COL.COLO4_22600 Corchorus olitorius HOM05D002762 ORTHO05D155964 1.4e-13 82.4 74 64.9
MD13G1179000 Malus domestica HOM05D002762 ORTHO05D030920 1.5e-09 68.9 39 76.9
TWI09G1537 Tripterygium wilfordii HOM05D002762 ORTHO05D008831 4.5e-09 67.4 41 78.0
Glyma.07G254400 Glycine max HOM05D002762 ORTHO05D004643 1.0e-08 66.2 47 68.1


User provided reference genes

Program Settings