Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 2.9e-82 308.5 160 100.0
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 2.0e-75 285.8 160 93.8
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 2.9e-74 282.0 160 92.5
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.3e-71 272.3 160 88.1
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.3e-71 272.3 160 88.1
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 5.2e-71 271.2 160 88.8
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.0e-70 269.2 160 87.5
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.5e-65 252.3 157 83.4
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 5.6e-65 251.1 159 81.1
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 8.9e-63 243.8 157 82.8
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 6.4e-61 237.7 157 79.0
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 5.4e-60 234.6 157 79.0
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 2.5e-57 225.7 157 74.5
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 2.8e-56 222.2 156 76.3
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.4e-55 219.9 157 75.2
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 3.1e-55 218.8 157 74.5
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 5.2e-55 218.0 157 73.9
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 6.8e-55 217.6 155 73.5
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 6.8e-55 217.6 155 74.8
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.5e-54 216.5 157 73.2
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 2.0e-54 216.1 158 70.9
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 2.6e-54 215.7 157 74.5
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 3.4e-54 215.3 160 70.0
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 4.4e-54 214.9 157 73.9
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 7.5e-54 214.2 157 72.6
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 7.5e-54 214.2 155 74.2
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 9.9e-54 213.8 154 74.0
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 1.7e-53 213.0 156 73.1
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 1.7e-53 213.0 155 74.2
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 3.7e-53 211.8 156 73.1
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 6.4e-53 211.1 159 70.4
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 6.4e-53 211.1 154 74.0
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 6.4e-53 211.1 155 71.6
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 8.3e-53 210.7 155 72.9
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 1.1e-52 210.3 153 73.9
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 1.1e-52 210.3 155 73.5
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 1.4e-52 209.9 155 72.9
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 1.9e-52 209.5 157 73.9
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 2.4e-52 209.1 155 72.9
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 3.2e-52 208.8 157 73.9
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 4.1e-52 208.4 152 73.0
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 4.1e-52 208.4 155 72.3
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 4.1e-52 208.4 156 71.8
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 7.1e-52 207.6 159 70.4
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 7.1e-52 207.6 157 73.2
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 9.2e-52 207.2 156 71.2
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 2.1e-51 206.1 153 71.2
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 3.5e-51 205.3 157 70.1
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 3.5e-51 205.3 147 76.9
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 3.5e-51 205.3 160 71.9
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 4.6e-51 204.9 157 68.8
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.6e-51 204.9 154 73.4
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 6.0e-51 204.5 155 73.5
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 7.8e-51 204.1 154 72.7
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 7.8e-51 204.1 154 72.7
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.0e-50 203.8 159 73.0
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 1.0e-50 203.8 152 71.1
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 1.0e-50 203.8 155 70.3
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.3e-50 203.4 158 72.8
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.7e-50 203.0 159 69.8
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 2.3e-50 202.6 156 70.5
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 3.0e-50 202.2 158 72.8
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 3.9e-50 201.8 186 61.3
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 3.9e-50 201.8 147 72.8
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 5.1e-50 201.4 145 74.5
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 5.1e-50 201.4 157 66.9
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 6.6e-50 201.1 155 71.6
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.5e-49 199.9 159 69.2
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 1.9e-49 199.5 155 71.0
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 3.3e-49 198.7 155 70.3
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 4.3e-49 198.4 155 72.3
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 5.6e-49 198.0 157 68.2
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.2e-48 196.8 157 72.6
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 1.6e-48 196.4 149 74.5
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 2.1e-48 196.1 154 72.1
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 3.6e-48 195.3 157 68.8
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 8.1e-48 194.1 159 67.3
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.8e-47 193.0 157 68.2
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 1.8e-47 193.0 155 67.7
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 2.4e-47 192.6 170 66.5
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 2.4e-47 192.6 155 71.0
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 6.8e-47 191.0 156 69.2
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 4.9e-45 184.9 220 52.3
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 6.4e-45 184.5 157 66.9
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 6.4e-45 184.5 153 65.4
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.4e-44 183.3 146 67.8
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.4e-44 183.3 146 67.8
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 4.2e-44 181.8 158 63.3
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 7.1e-44 181.0 202 56.9
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 9.2e-44 180.6 123 77.2
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 2.1e-43 179.5 158 61.4
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 2.7e-43 179.1 155 62.6
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.7e-43 179.1 128 76.6
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 3.5e-43 178.7 125 74.4
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 6.0e-43 177.9 153 65.4
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.3e-42 176.8 153 66.0
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 1.7e-42 176.4 158 60.1
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 3.0e-42 175.6 158 62.7
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 3.0e-42 175.6 158 62.7
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 3.0e-42 175.6 115 76.5
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 3.0e-42 175.6 158 62.7
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 3.9e-42 175.3 155 65.8
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 5.1e-42 174.9 159 62.3
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.1e-41 173.7 153 63.4
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 1.1e-41 173.7 153 63.4
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 1.1e-41 173.7 153 63.4
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.5e-41 173.3 155 61.3
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.9e-41 172.9 153 62.7
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.5e-41 172.6 153 62.7
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.3e-41 172.2 153 62.7
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 7.3e-41 171.0 158 60.1
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 3.6e-40 168.7 119 75.6
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 8.1e-40 167.5 143 65.7
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 1.1e-39 167.2 155 63.2
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 1.8e-39 166.4 155 63.2
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 1.8e-39 166.4 155 63.2
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 5.3e-39 164.9 173 56.6
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 5.3e-39 164.9 155 63.2
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.0e-38 162.9 155 62.6
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 3.4e-38 162.2 160 57.5
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 5.8e-38 161.4 126 69.8
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 9.9e-38 160.6 155 58.7
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.3e-37 160.2 155 58.1
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.7e-37 159.8 120 71.7
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 6.4e-37 157.9 182 52.7
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 6.4e-37 157.9 153 60.1
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 1.1e-36 157.1 152 59.2
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 1.9e-36 156.4 155 60.6
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.9e-36 156.4 160 58.1
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.4e-36 156.0 156 57.7
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 9.3e-36 154.1 155 58.7
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 2.7e-35 152.5 159 57.2
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 3.0e-34 149.1 126 67.5
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 6.6e-34 147.9 129 62.8
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 1.5e-33 146.7 267 40.4
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.5e-33 146.7 164 54.3
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 3.3e-33 145.6 160 56.2
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 4.3e-33 145.2 92 78.3
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 4.3e-33 145.2 155 56.1
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 5.6e-33 144.8 144 57.6
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 9.6e-33 144.1 152 56.6
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.1e-32 142.9 90 80.0
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 2.8e-32 142.5 98 73.5
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 3.6e-32 142.1 153 52.3
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 4.8e-32 141.7 156 53.8
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 6.2e-32 141.4 93 77.4
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 4.0e-31 138.7 144 56.2
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 4.0e-31 138.7 141 58.2
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 4.0e-31 138.7 95 72.6
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 4.0e-31 138.7 89 77.5
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 1.2e-30 137.1 151 56.3
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 1.5e-30 136.7 89 77.5
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 2.6e-30 136.0 153 53.6
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 5.8e-30 134.8 164 53.0
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 9.9e-30 134.0 91 71.4
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.7e-29 133.3 118 61.9
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 3.8e-29 132.1 162 51.9
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.4e-29 131.3 95 71.6
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 2.4e-28 129.4 170 50.0
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 4.6e-27 125.2 91 68.1
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 6.7e-26 121.3 157 50.3
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 9.0e-23 110.9 95 66.3
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 9.0e-23 110.9 153 47.1
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.4e-20 103.6 92 64.1
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 9.3e-20 100.9 92 60.9
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 7.9e-19 97.8 69 71.0
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.0e-18 95.9 69 71.0
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 5.1e-18 95.1 75 58.7
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 4.8e-16 88.6 88 59.1
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 9.0e-15 84.3 83 48.2
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 1.2e-14 84.0 60 66.7
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.6e-11 73.6 64 57.8
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.3e-08 63.9 58 62.1
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 1.1e-07 60.8 88 42.0
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 2.4e-07 59.7 41 70.7
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 4.1e-07 58.9 45 62.2
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 5.3e-07 58.5 84 42.9


User provided reference genes

Program Settings