Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 3.3e-259 897.9 459 100.0
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 1.4e-241 839.3 459 93.0
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 2.0e-240 835.5 459 92.4
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 7.8e-237 823.5 457 91.7
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 4.3e-235 817.8 459 90.4
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 9.5e-235 816.6 459 91.3
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 3.1e-233 811.6 460 91.3
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 5.8e-232 807.4 460 90.7
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 5.4e-214 747.7 460 82.4
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 9.3e-214 746.9 460 82.4
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 3.5e-213 745.0 460 83.3
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 2.1e-210 735.7 460 80.7
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 2.1e-210 735.7 460 80.9
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 2.8e-210 735.3 461 79.2
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 3.6e-210 734.9 462 81.0
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 4.2e-206 721.5 461 80.9
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 3.5e-205 718.4 460 78.9
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 3.5e-205 718.4 459 79.3
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 1.0e-204 716.8 460 78.7
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 3.0e-204 715.3 468 78.8
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 5.1e-204 714.5 460 79.1
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 5.1e-204 714.5 462 78.8
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 4.3e-203 711.4 462 77.9
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 1.3e-202 709.9 486 75.1
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 1.6e-202 709.5 461 78.7
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 8.1e-202 707.2 461 78.5
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 1.4e-201 706.4 464 76.9
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 5.3e-201 704.5 461 78.3
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 6.9e-201 704.1 461 77.7
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 6.9e-201 704.1 462 78.4
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 1.5e-200 703.0 460 78.5
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 1.0e-199 700.3 466 77.5
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 1.7e-199 699.5 461 77.4
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 4.9e-199 698.0 469 78.0
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 8.4e-199 697.2 461 77.2
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 1.1e-198 696.8 466 76.6
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 1.4e-198 696.4 466 77.3
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 1.4e-198 696.4 460 77.0
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 2.5e-198 695.7 462 77.1
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 4.2e-198 694.9 464 77.6
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 5.5e-198 694.5 461 77.0
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 7.1e-198 694.1 461 76.8
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 2.1e-197 692.6 460 76.7
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 6.0e-197 691.0 460 76.5
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 7.9e-197 690.6 455 78.0
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 2.3e-196 689.1 461 75.5
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 3.0e-196 688.7 451 78.7
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 1.5e-195 686.4 460 77.0
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 5.7e-195 684.5 461 75.9
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 7.4e-195 684.1 465 76.3
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 9.6e-195 683.7 468 73.5
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 1.6e-194 682.9 468 73.1
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 5.3e-193 677.9 469 74.4
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 9.0e-193 677.2 461 74.8
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.2e-192 676.8 462 73.2
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 1.5e-192 676.4 465 75.7
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 3.4e-192 675.2 462 74.2
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 4.5e-192 674.9 481 71.5
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 7.6e-192 674.1 441 77.3
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 5.0e-191 671.4 509 69.5
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 8.5e-191 670.6 464 72.6
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 1.9e-190 669.5 469 73.1
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 5.5e-190 667.9 464 72.4
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 1.2e-189 666.8 427 78.9
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 2.7e-189 665.6 464 71.8
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 4.6e-189 664.8 468 73.5
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 1.0e-188 663.7 464 72.4
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 1.0e-188 663.7 464 72.4
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 1.0e-188 663.7 464 72.4
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 1.3e-188 663.3 464 71.8
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 1.3e-188 663.3 469 74.4
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 1.3e-188 663.3 469 71.2
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 2.3e-188 662.5 464 70.9
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 3.0e-188 662.1 458 74.7
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 3.9e-188 661.8 461 72.0
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 1.1e-187 660.2 464 71.1
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 2.5e-187 659.1 464 71.1
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 9.7e-187 657.1 467 71.9
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 1.3e-186 656.8 464 71.3
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 4.8e-186 654.8 464 71.6
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 4.8e-186 654.8 468 72.2
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 3.1e-185 652.1 467 72.4
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 9.1e-185 650.6 465 71.4
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 9.1e-185 650.6 465 71.4
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 1.2e-184 650.2 469 71.6
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 2.6e-184 649.0 468 71.4
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 3.4e-184 648.7 494 68.8
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 2.9e-183 645.6 468 70.9
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 6.5e-183 644.4 489 68.5
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 6.5e-183 644.4 465 71.0
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 1.4e-182 643.3 405 77.0
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 1.4e-182 643.3 463 71.5
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 5.5e-182 641.3 463 71.7
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 7.2e-182 641.0 465 71.4
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 2.1e-181 639.4 467 71.1
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 2.7e-181 639.0 465 71.8
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 6.1e-181 637.9 420 76.4
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 1.7e-178 629.8 470 69.6
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 1.1e-177 627.1 420 74.0
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 1.0e-175 620.5 465 68.4
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 2.2e-175 619.4 461 69.4
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 5.0e-175 618.2 456 69.5
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 8.8e-172 607.4 398 74.6
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 2.6e-168 595.9 461 64.6
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 5.9e-168 594.7 465 67.1
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 2.2e-167 592.8 458 66.4
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 1.1e-166 590.5 417 70.5
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 2.5e-166 589.3 415 72.8
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 1.2e-165 587.0 456 66.0
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 9.1e-161 570.9 399 73.2
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 8.8e-148 527.7 316 82.9
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 4.9e-146 521.9 382 70.7
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 8.3e-138 494.6 468 55.6
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 7.0e-137 491.5 414 59.7
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 8.3e-130 468.0 402 57.7
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 5.2e-116 422.2 468 51.3
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 1.6e-104 384.0 285 66.3
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 5.6e-102 375.6 258 76.7
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 2.8e-101 373.2 408 51.2
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 8.1e-101 371.7 552 38.6
Actinidia05473 Actinidia chinensis HOM05D005575 ORTHO05D007355 1.2e-75 288.1 188 75.0
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 1.2e-75 288.1 267 59.6
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 1.9e-65 254.2 254 57.5
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 2.5e-65 253.8 254 57.5
TAR365G1190 Trochodendron aralioides HOM05D005575 ORTHO05D007355 1.8e-55 221.1 207 60.4
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 1.2e-46 191.8 162 66.0
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 4.5e-43 179.9 145 64.1
C08p25570 Brassica napus HOM05D005575 ORTHO05D027690 2.2e-42 177.6 146 63.7
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 3.2e-41 173.7 119 80.7
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 1.3e-34 151.8 123 64.2
AagrBONN_evm.TU.Sc2ySwM_344.3391 Anthoceros agrestis HOM05D005575 ORTHO05D007355 8.9e-31 139.0 394 29.7
BcaC07g39513 Brassica carinata HOM05D005575 ORTHO05D027690 2.6e-22 110.9 60 86.7
Psat7g122560 Pisum sativum HOM05D005575 ORTHO05D007355 2.3e-15 87.8 59 67.8
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 2.6e-14 84.3 57 77.2
Sabra10G0062800 Salix brachista HOM05D005575 ORTHO05D027690 1.7e-13 81.6 73 60.3
Cc06_g23150 Coffea canephora HOM05D005575 ORTHO05D007355 9.2e-12 75.9 65 63.1


User provided reference genes

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