Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 5.1e-248 860.5 408 100.0
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 4.0e-216 754.6 435 83.2
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 1.3e-206 723.0 413 82.3
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 3.1e-205 718.4 417 82.3
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 6.8e-200 700.7 365 88.2
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 3.9e-187 658.3 413 77.5
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 1.9e-178 629.4 396 73.7
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 8.1e-177 624.0 389 74.8
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 6.8e-176 620.9 413 72.2
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 7.5e-175 617.5 380 73.4
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 9.9e-175 617.1 369 76.7
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 1.7e-174 616.3 383 72.8
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 3.7e-174 615.1 368 76.4
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 8.3e-174 614.0 416 70.7
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 4.1e-173 611.7 370 74.9
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 5.4e-173 611.3 419 70.9
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 9.2e-173 610.5 367 74.9
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 1.6e-172 609.8 380 72.6
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 1.6e-172 609.8 384 71.9
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 3.5e-172 608.6 402 70.9
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 7.8e-172 607.4 399 71.2
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 7.8e-172 607.4 377 73.5
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 1.7e-171 606.3 381 74.0
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 3.0e-171 605.5 381 73.5
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 5.1e-171 604.7 497 61.4
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 6.6e-171 604.4 381 72.4
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 8.6e-171 604.0 391 71.4
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.1e-170 603.6 381 73.8
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 1.1e-170 603.6 392 70.9
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 3.3e-170 602.1 382 71.7
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 5.6e-170 601.3 400 69.5
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 5.6e-170 601.3 378 72.8
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 1.6e-169 599.7 392 70.2
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 6.2e-169 597.8 377 71.4
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 1.8e-168 596.3 367 73.0
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 3.1e-168 595.5 381 72.4
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 4.0e-168 595.1 373 72.1
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 6.8e-168 594.3 378 71.4
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 1.2e-167 593.6 371 73.0
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 1.2e-167 593.6 395 67.6
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 1.5e-167 593.2 392 69.4
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 1.5e-167 593.2 397 70.0
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 2.0e-167 592.8 383 70.8
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 2.6e-167 592.4 377 72.4
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 3.4e-167 592.0 366 73.2
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 4.4e-167 591.7 397 68.0
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 2.2e-166 589.3 366 72.4
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 1.1e-165 587.0 387 69.0
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 7.8e-164 580.9 409 66.5
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 1.0e-163 580.5 411 67.4
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 1.0e-163 580.5 373 69.2
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 1.0e-163 580.5 393 68.2
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 1.7e-163 579.7 366 71.3
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 1.5e-162 576.6 366 72.4
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 5.6e-162 574.7 365 72.1
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 7.3e-162 574.3 366 71.9
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 1.2e-161 573.5 365 71.8
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 1.2e-161 573.5 403 65.5
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 2.1e-161 572.8 353 73.9
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 2.4e-160 569.3 377 67.1
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 4.0e-160 568.5 368 70.4
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 2.6e-159 565.8 347 77.2
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 2.6e-159 565.8 405 66.4
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 9.9e-159 563.9 365 70.4
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 4.9e-158 561.6 405 63.2
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 1.1e-157 560.5 393 66.7
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 1.1e-157 560.5 371 67.1
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 2.4e-157 559.3 398 63.6
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 2.1e-156 556.2 370 69.2
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 2.1e-156 556.2 370 69.2
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 2.1e-156 556.2 372 66.1
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 3.5e-156 555.4 372 68.0
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 1.3e-155 553.5 369 69.4
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 3.0e-155 552.4 413 62.7
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 5.1e-155 551.6 389 67.4
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 1.1e-154 550.4 368 68.8
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 1.5e-154 550.1 389 64.5
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 1.5e-154 550.1 398 63.6
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 3.3e-154 548.9 396 66.4
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 5.6e-154 548.1 369 68.6
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 7.3e-154 547.7 363 66.9
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 3.6e-153 545.4 386 66.3
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 1.4e-152 543.5 388 64.4
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 2.0e-151 539.7 363 67.2
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 2.2e-150 536.2 368 65.8
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 1.9e-149 533.1 328 75.9
Psat4g014320 Pisum sativum HOM05D006474 ORTHO05D007994 7.9e-148 527.7 354 68.4
CANSAT54G2413 Cannabis sativa HOM05D006474 ORTHO05D007994 2.9e-142 509.2 333 71.5
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 1.9e-141 506.5 372 64.8
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 1.3e-137 493.8 378 58.2
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 2.6e-135 486.1 322 69.9
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 1.1e-133 480.7 383 56.1
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 1.9e-133 479.9 290 73.1
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 3.5e-132 475.7 307 71.0
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 1.1e-128 464.2 362 57.7
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 1.4e-128 463.8 303 68.0
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 4.1e-128 462.2 368 57.6
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 6.9e-128 461.5 364 55.5
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 2.0e-127 459.9 365 55.3
PSO170G4238 Papaver somniferum HOM05D006474 ORTHO05D007994 1.7e-118 430.3 304 65.8
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 8.8e-115 417.9 378 50.8
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 1.1e-112 411.0 366 51.4
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 1.7e-102 377.1 229 76.4
Lju50A4G45 Lonicera japonica HOM05D006474 ORTHO05D007994 2.2e-102 376.7 260 68.1
Cfa013469 Carpinus fangiana HOM05D006474 ORTHO05D007994 8.5e-102 374.8 281 66.2
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 3.6e-92 342.8 363 46.3
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 1.0e-86 324.7 362 48.3
FAN22G2051 Fragaria x ananassa HOM05D006474 ORTHO05D007994 5.0e-78 295.8 326 50.6
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 2.4e-72 276.9 242 59.5
Phvul.010G082000 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 2.9e-65 253.4 186 61.8
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 9.9e-58 228.4 192 57.3
PRCOL_00004194 Prasinoderma coloniale HOM05D006474 ORTHO05D007994 1.0e-54 218.4 467 30.6
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 1.2e-50 204.9 234 41.9
SEGI_01125 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 5.3e-43 179.5 129 58.9
Phvul.011G131100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 1.8e-35 154.5 102 64.7
Gohir.A08G164600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 2.8e-28 130.6 72 81.9
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 1.8e-27 127.9 64 92.2
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 1.1e-24 118.6 62 87.1
RcHm_v2.0_Chr4g0398881 Rosa chinensis HOM05D006474 ORTHO05D007994 1.4e-24 118.2 203 35.0
Actinidia29962 Actinidia chinensis HOM05D006474 ORTHO05D007994 4.6e-23 113.2 90 58.9
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 3.7e-20 103.6 63 74.6
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 7.1e-16 89.4 45 84.4
Oeu005633.1 Olea europaea HOM05D006474 ORTHO05D007994 7.1e-16 89.4 65 60.0
SEGI_25707 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 2.6e-10 70.9 42 64.3
Gohir.A06G077600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 3.4e-10 70.5 71 53.5
Lsat_1_v5_gn_3_77541 Lactuca sativa HOM05D006474 ORTHO05D007994 1.1e-08 65.5 51 62.7


User provided reference genes

Program Settings