Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G183800 Theobroma cacao HOM05D007575 ORTHO05D009611 1.5e-279 965.7 537 100.0
Duzib151G0056 Durio zibethinus HOM05D007575 ORTHO05D009611 2.2e-214 749.2 540 74.8
Gorai.011G145500 Gossypium raimondii HOM05D007575 ORTHO05D009611 1.1e-205 720.3 541 72.1
Gohir.D10G131800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 1.9e-205 719.5 541 72.1
Gohir.A10G134800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 3.1e-200 702.2 541 71.0
Gorai.009G350900 Gossypium raimondii HOM05D007575 ORTHO05D009611 4.0e-184 648.7 542 67.0
Gohir.D05G326300 Gossypium hirsutum HOM05D007575 ORTHO05D009611 2.6e-183 646.0 542 66.8
Gohir.A05G326900 Gossypium hirsutum HOM05D007575 ORTHO05D009611 1.6e-177 626.7 542 65.9
COL.COLO4_24385 Corchorus olitorius HOM05D001792 ORTHO05D001821 6.2e-169 598.2 541 63.6
QL10p045159 Quercus lobata HOM05D007575 ORTHO05D009611 6.1e-148 528.5 539 57.1
Cfa015783 Carpinus fangiana HOM05D007575 ORTHO05D009611 2.8e-145 519.6 543 56.4
Haze_00711 Corylus avellana HOM05D007575 ORTHO05D009611 7.7e-143 511.5 548 56.2
CiPaw.01G103900 Carya illinoinensis HOM05D007575 ORTHO05D009611 9.4e-141 504.6 545 55.6
Manes.11G115700 Manihot esculenta HOM05D007575 ORTHO05D009611 8.2e-137 491.5 544 54.2
Potri.017G036600 Populus trichocarpa HOM05D007575 ORTHO05D009611 4.5e-135 485.7 536 54.9
Prupe.1G189300 Prunus persica HOM05D007575 ORTHO05D009611 6.5e-134 481.9 547 52.8
GSVIVG01013567001 Vitis vinifera HOM05D007575 ORTHO05D009611 3.2e-133 479.6 545 53.6
Sabra07G0100200 Salix brachista HOM05D007575 ORTHO05D009611 1.2e-132 477.6 537 52.9
Ciclev10019508m.g Citrus clementina HOM05D007575 ORTHO05D009611 2.1e-132 476.9 580 51.4
Atru.chr3.1619 Acer truncatum HOM05D007575 ORTHO05D009611 2.0e-130 470.3 500 55.6
Actinidia39859 Actinidia chinensis HOM05D007575 ORTHO05D009611 3.7e-129 466.1 565 50.8
MD04G1038600 Malus domestica HOM05D007575 ORTHO05D009611 1.0e-126 458.0 543 52.5
CSS0031716 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 2.9e-126 456.4 576 49.1
TAR633G2419 Trochodendron aralioides HOM05D007575 ORTHO05D009611 1.8e-123 447.2 531 50.3
Sabra17G0024000 Salix brachista HOM05D007575 ORTHO05D009611 4.1e-120 436.0 585 48.2
Rhsim09G0032600 Rhododendron simsii HOM05D007575 ORTHO05D009611 3.5e-119 433.0 550 50.0
Actinidia11312 Actinidia chinensis HOM05D007575 ORTHO05D009611 9.4e-117 424.9 536 49.4
Cc03_g13380 Coffea canephora HOM05D007575 ORTHO05D009611 3.0e-115 419.9 543 49.4
RcHm_v2.0_Chr4g0407361 Rosa chinensis HOM05D007575 ORTHO05D009611 4.0e-115 419.5 604 45.9
CANSAT78G0404 Cannabis sativa HOM05D007575 ORTHO05D009611 5.2e-115 419.1 544 47.8
THA.LOC104803562 Tarenaya hassleriana HOM05D007575 ORTHO05D009611 5.2e-115 419.1 540 46.7
Oeu050351.1 Olea europaea HOM05D007575 ORTHO05D009611 7.5e-114 415.2 539 49.0
ClCG08G004240 Citrullus lanatus HOM05D007575 ORTHO05D009611 5.4e-112 409.1 543 48.4
Aa31LG1G25020 Aethionema arabicum HOM05D007575 ORTHO05D009611 9.2e-112 408.3 544 48.2
FAN17G1632 Fragaria x ananassa HOM05D007575 ORTHO05D009611 1.6e-111 407.5 604 44.4
Potri.007G123800 Populus trichocarpa HOM05D007575 ORTHO05D009611 1.6e-111 407.5 466 52.8
CAN.G710.64 Capsicum annuum HOM05D007575 ORTHO05D009611 2.0e-111 407.1 538 48.5
Thhalv10001393m.g Eutrema salsugineum HOM05D007575 ORTHO05D009611 4.5e-111 406.0 548 48.0
FAN07G0850 Fragaria x ananassa HOM05D007575 ORTHO05D009611 6.6e-110 402.1 604 44.9
Sp4g25330 Schrenkiella parvula HOM05D007575 ORTHO05D009611 4.3e-109 399.4 561 45.1
DCAR_027534 Daucus carota HOM05D007575 ORTHO05D009611 9.5e-109 398.3 543 46.2
PGR083G2249 Punica granatum HOM05D007575 ORTHO05D009611 9.5e-109 398.3 547 50.3
MELO3C011621.2 Cucumis melo HOM05D007575 ORTHO05D009611 1.6e-108 397.5 549 47.2
Nn1g09745 Nelumbo nucifera HOM05D007575 ORTHO05D009611 2.8e-108 396.7 569 44.8
FvH4_4g11270 Fragaria vesca HOM05D007575 ORTHO05D009611 3.6e-108 396.4 603 44.1
Migut.N00470 Erythranthe guttata HOM05D007575 ORTHO05D009611 8.0e-108 395.2 545 47.5
CsaV3_6G003720 Cucumis sativus L. HOM05D007575 ORTHO05D009611 1.4e-107 394.4 549 47.5
AL4G41870 Arabidopsis lyrata HOM05D007575 ORTHO05D009611 2.3e-107 393.7 564 45.7
AT2G43210 Arabidopsis thaliana HOM05D007575 ORTHO05D009611 5.2e-107 392.5 566 45.4
Sed0001943 Sechium edule HOM05D007575 ORTHO05D009611 2.6e-106 390.2 548 46.9
vmacro00586 Vaccinium macrocarpon HOM05D007575 ORTHO05D009611 2.6e-106 390.2 597 45.1
Carub.0004s2568 Capsella rubella HOM05D007575 ORTHO05D009611 2.2e-105 387.1 559 45.4
SalBow6G5467 Salvia bowleyana HOM05D007575 ORTHO05D009611 2.2e-105 387.1 532 44.7
Eucgr.A00245 Eucalyptus grandis HOM05D007575 ORTHO05D009611 2.9e-105 386.7 543 47.0
Lj6A70T54 Lonicera japonica HOM05D007575 ORTHO05D009611 3.7e-105 386.3 652 43.7
MSTRG.24588 Avicennia marina HOM05D007575 ORTHO05D009611 7.0e-104 382.1 547 46.3
Sopen09g036470 Solanum pennellii HOM05D007575 ORTHO05D009611 1.0e-102 378.3 531 45.4
HanXRQChr02g0057801 Helianthus annuus HOM05D007575 ORTHO05D009611 1.7e-102 377.5 579 44.6
SGA_v2.0_scaffold406G51053 Striga asiatica HOM05D007575 ORTHO05D009611 1.7e-102 377.5 550 45.8
ECA233G3130 Erigeron canadensis HOM05D007575 ORTHO05D009611 2.3e-102 377.1 537 46.7
MBI08_g10298_MAGBIO Magnolia biondii HOM05D007575 ORTHO05D009611 4.3e-101 372.9 600 40.5
BraA04t18714Z Brassica rapa HOM05D001811 ORTHO05D001738 3.6e-100 369.8 537 48.0
FAN22G0659 Fragaria x ananassa HOM05D007575 ORTHO05D009611 1.3e-97 361.3 614 41.5
Lsat_1_v5_gn_6_54841 Lactuca sativa HOM05D007575 ORTHO05D009611 1.9e-96 357.5 548 44.0
C04p70190 Brassica napus HOM05D007575 ORTHO05D009611 3.5e-95 353.2 568 42.6
A04p32490 Brassica napus HOM05D007575 ORTHO05D009611 8.6e-94 348.6 589 42.1
Peaxi162Scf00286g00233 Petunia axillaris HOM05D007575 ORTHO05D009611 2.6e-90 337.0 563 43.2
HPP92_002813 Vanilla planifolia HOM05D007575 ORTHO05D009611 2.0e-82 310.8 536 39.2
ATR0743G244 Amborella trichopoda HOM05D007575 ORTHO05D009611 7.6e-82 308.9 542 38.0
PSO210G6745 Papaver somniferum HOM05D007575 ORTHO05D009611 2.2e-81 307.4 558 42.7
unitig_8.g3630 Utricularia gibba HOM05D007575 ORTHO05D009611 9.2e-80 302.0 553 39.4
HPP92_002869 Vanilla planifolia HOM05D007575 ORTHO05D009611 9.2e-80 302.0 505 39.2
CDE09G0236 Ceratophyllum demersum HOM05D007575 ORTHO05D009611 8.6e-78 295.4 542 37.1
Solyc09g098550.4 Solanum lycopersicum HOM05D007575 ORTHO05D009611 2.1e-76 290.8 455 43.1
Lj6A61T39 Lonicera japonica HOM05D007575 ORTHO05D009611 1.1e-75 288.5 376 50.5
Nitab4.5_0001049g0060 Nicotiana tabacum HOM05D007575 ORTHO05D009611 3.1e-75 287.0 487 42.5
CARHR138270 Cardamine hirsuta HOM05D007575 ORTHO05D009611 5.2e-75 286.2 479 45.3
Os11g0293900 Oryza sativa ssp. japonica HOM05D007575 ORTHO05D009611 2.6e-74 283.9 544 35.3
Nitab4.5_0004962g0010 Nicotiana tabacum HOM05D007575 ORTHO05D009611 5.8e-74 282.7 466 44.0
BcaNung07370 Brassica carinata HOM05D007575 ORTHO05D009611 2.3e-70 270.8 466 41.2
PSO832G0541 Papaver somniferum HOM05D007575 ORTHO05D009611 5.8e-58 229.6 468 40.8
Hma1.2p1_1477F.1_g285910 Hydrangea macrophylla HOM05D007575 ORTHO05D009611 1.9e-40 171.4 429 37.1
Mapoly0164s0007 Marchantia polymorpha HOM05D007575 ORTHO05D009611 3.2e-40 170.6 454 31.5
TAR633G1182 Trochodendron aralioides HOM05D007575 ORTHO05D009611 2.5e-37 161.0 176 50.6
SalBow5G2148 Salvia bowleyana HOM05D007575 ORTHO05D009611 1.3e-33 148.7 172 48.3
SalBow5G4021 Salvia bowleyana HOM05D007575 ORTHO05D009611 1.3e-33 148.7 172 48.3
Zm00001eb198990 Zea mays HOM05D007575 ORTHO05D009611 1.7e-33 148.3 219 38.8
SEGI_13760 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 3.8e-33 147.1 401 30.9
Pp3c20_2320 Physcomitrium patens HOM05D007575 ORTHO05D009611 8.5e-33 146.0 542 26.2
BcaB06g29288 Brassica carinata HOM05D007575 ORTHO05D009611 7.9e-31 139.4 128 55.5
SMO116G0403 Selaginella moellendorffii HOM05D007575 ORTHO05D009611 1.8e-30 138.3 555 30.5
Eucgr.A00051 Eucalyptus grandis HOM05D007575 ORTHO05D009611 2.3e-30 137.9 170 52.4
CSS0007449 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 3.3e-29 134.0 357 34.2
AagrBONN_evm.TU.Sc2ySwM_344.3290 Anthoceros agrestis HOM05D007575 ORTHO05D009611 1.4e-24 118.6 448 29.2
Lsat_1_v5_gn_5_138981 Lactuca sativa HOM05D007575 ORTHO05D009611 1.9e-24 118.2 344 32.0
SEGI_03248 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 3.3e-21 107.5 169 43.2
CBR_g123 Chara braunii HOM05D007575 ORTHO05D009611 7.7e-18 96.3 421 24.9
PGSC0003DMG400021612 Solanum tuberosum HOM05D007575 ORTHO05D009611 5.0e-17 93.6 119 47.9
MBI08_g05086_MAGBIO Magnolia biondii HOM05D007575 ORTHO05D009611 1.2e-10 72.4 61 60.7
Sed0012052 Sechium edule HOM05D002884 ORTHO05D003178 3.8e-09 67.4 121 33.1
Gohir.A09G193001 Gossypium hirsutum HOM05D002884 ORTHO05D003178 8.5e-09 66.2 77 40.3
Nn1g01376 Nelumbo nucifera HOM05D002884 ORTHO05D003178 1.5e-08 65.5 77 41.6
Peaxi162Scf00714g00057 Petunia axillaris HOM05D002884 ORTHO05D003178 7.2e-08 63.2 122 32.0
MSTRG.12015 Avicennia marina HOM05D002884 ORTHO05D003178 2.1e-07 61.6 77 37.7
Potri.014G075600 Populus trichocarpa HOM05D002884 ORTHO05D003178 2.1e-07 61.6 77 36.4
SalBow6G0746 Salvia bowleyana HOM05D002884 ORTHO05D003178 2.1e-07 61.6 87 34.5
Sed0001920 Sechium edule HOM05D002884 ORTHO05D003178 2.1e-07 61.6 87 37.9
CsaV3_3G003750 Cucumis sativus L. HOM05D002884 ORTHO05D003178 2.7e-07 61.2 91 37.4
Gohir.D09G187200 Gossypium hirsutum HOM05D002884 ORTHO05D003178 2.7e-07 61.2 77 37.7
Gorai.006G210000 Gossypium raimondii HOM05D002884 ORTHO05D003178 2.7e-07 61.2 77 37.7
MBI04_g00304_MAGBIO Magnolia biondii HOM05D002884 ORTHO05D003178 2.7e-07 61.2 78 39.7
SGA_v2.0_scaffold144G35971 Striga asiatica HOM05D002884 ORTHO05D003178 2.7e-07 61.2 102 35.3
CAN.G981.24 Capsicum annuum HOM05D002884 ORTHO05D003178 3.6e-07 60.8 95 36.8
Sabra14G0056200 Salix brachista HOM05D002884 ORTHO05D003178 3.6e-07 60.8 77 36.4
MELO3C014057.2 Cucumis melo HOM05D002884 ORTHO05D003178 4.7e-07 60.5 77 40.3
HPP92_022610 Vanilla planifolia HOM05D002884 ORTHO05D003178 4.7e-07 60.5 120 35.8
Nitab4.5_0002853g0040 Nicotiana tabacum HOM05D002884 ORTHO05D003178 6.1e-07 60.1 109 34.9
Solyc08g080410.3 Solanum lycopersicum HOM05D002884 ORTHO05D003178 6.1e-07 60.1 77 39.0
Sopen08g028740 Solanum pennellii HOM05D002884 ORTHO05D003178 6.1e-07 60.1 77 39.0
Glyma.17G131100 Glycine max HOM05D002884 ORTHO05D003178 8.0e-07 59.7 77 36.4
Nitab4.5_0002234g0060 Nicotiana tabacum HOM05D002884 ORTHO05D003178 8.0e-07 59.7 77 39.0
PSO782G3187 Papaver somniferum HOM05D002884 ORTHO05D003178 8.0e-07 59.7 102 33.3
Gohir.A12G225400 Gossypium hirsutum HOM05D002884 ORTHO05D003178 1.0e-06 59.3 102 33.3
Gorai.008G244000 Gossypium raimondii HOM05D002884 ORTHO05D003178 1.0e-06 59.3 102 33.3
PSO478G0346 Papaver somniferum HOM05D002884 ORTHO05D003178 1.0e-06 59.3 94 35.1
VMungo1215G1054 Vigna mungo HOM05D002884 ORTHO05D003178 1.0e-06 59.3 77 33.8
Duzib205G1004 Durio zibethinus HOM05D002884 ORTHO05D003178 1.4e-06 58.9 77 36.4
Gohir.D12G228000 Gossypium hirsutum HOM05D002884 ORTHO05D003178 1.4e-06 58.9 102 33.3
Duzib068G1440 Durio zibethinus HOM05D002884 ORTHO05D003178 1.8e-06 58.5 77 36.4
Glyma.05G049200 Glycine max HOM05D002884 ORTHO05D003178 1.8e-06 58.5 77 35.1
Lj2g0016961 Lotus japonicus HOM05D002884 ORTHO05D003178 1.8e-06 58.5 94 35.1
Lalb_Chr09g0321151 Lupinus albus HOM05D002884 ORTHO05D003178 1.8e-06 58.5 77 36.4
Lalb_Chr16g0377211 Lupinus albus HOM05D002884 ORTHO05D003178 1.8e-06 58.5 77 36.4
Nn6g34230 Nelumbo nucifera HOM05D002884 ORTHO05D003178 1.8e-06 58.5 77 36.4
Phvul.003G212000 Phaseolus vulgaris HOM05D002884 ORTHO05D003178 1.8e-06 58.5 77 35.1
Aqoxy7G00426 Aquilegia oxysepala HOM05D002884 ORTHO05D003178 2.3e-06 58.2 102 33.3
Sc22g0000260 Simmondsia chinensis HOM05D002884 ORTHO05D003178 2.3e-06 58.2 102 31.4
SGA_v2.0_scaffold385G50454 Striga asiatica HOM05D002884 ORTHO05D003178 2.3e-06 58.2 102 34.3
Zm00001eb316320 Zea mays HOM05D002436 ORTHO05D002754 2.3e-06 58.2 74 39.2
CSS0004594 Camellia sinensis var. sinensis HOM05D002884 ORTHO05D003178 3.0e-06 57.8 104 30.8
ClCG00G000910 Citrullus lanatus HOM05D002884 ORTHO05D003178 3.0e-06 57.8 77 39.0
ClCG00G001160 Citrullus lanatus HOM05D002884 ORTHO05D003178 3.0e-06 57.8 77 39.0
ClCG10G003770 Citrullus lanatus HOM05D002884 ORTHO05D003178 3.0e-06 57.8 77 39.0
MELO3C006143.2 Cucumis melo HOM05D002884 ORTHO05D003178 3.0e-06 57.8 154 29.2
Thecc.03G272100 Theobroma cacao HOM05D002884 ORTHO05D003178 3.0e-06 57.8 104 31.7
CDE04G2022 Ceratophyllum demersum HOM05D002884 ORTHO05D003178 4.0e-06 57.4 108 30.6
Sc01g0008750 Simmondsia chinensis HOM05D002884 ORTHO05D003178 4.0e-06 57.4 77 36.4
PGSC0003DMG400003048 Solanum tuberosum HOM05D002884 ORTHO05D003178 4.0e-06 57.4 70 40.0
Ciclev10019482m.g Citrus clementina HOM05D002884 ORTHO05D003178 5.2e-06 57.0 77 35.1
COL.COLO4_05264 Corchorus olitorius HOM05D002884 ORTHO05D003178 5.2e-06 57.0 77 35.1
Dinv37684 Davidia involucrata HOM05D002884 ORTHO05D003178 5.2e-06 57.0 102 31.4
Lalb_Chr05g0225031 Lupinus albus HOM05D002884 ORTHO05D003178 5.2e-06 57.0 77 35.1
Lalb_Chr16g0389741 Lupinus albus HOM05D002884 ORTHO05D003178 5.2e-06 57.0 77 33.8
TPR.G19228 Trifolium pratense HOM05D002884 ORTHO05D003178 5.2e-06 57.0 77 37.7
Actinidia14527 Actinidia chinensis HOM05D002884 ORTHO05D003178 6.8e-06 56.6 77 35.1
CiPaw.11G140600 Carya illinoinensis HOM05D002884 ORTHO05D003178 6.8e-06 56.6 102 32.4
Migut.A00926 Erythranthe guttata HOM05D002884 ORTHO05D003178 6.8e-06 56.6 104 30.8
GSVIVG01019815001 Vitis vinifera HOM05D002884 ORTHO05D003178 6.8e-06 56.6 77 35.1
CSS0002116 Camellia sinensis var. sinensis HOM05D002884 ORTHO05D003178 8.8e-06 56.2 77 35.1
Psat4g066960 Pisum sativum HOM05D002884 ORTHO05D003178 8.8e-06 56.2 77 35.1
PGR042G2076 Punica granatum HOM05D002884 ORTHO05D003178 8.8e-06 56.2 102 31.4
Sabra03G0086200 Salix brachista HOM05D002884 ORTHO05D003178 8.8e-06 56.2 74 35.1
TAR636G2592 Trochodendron aralioides HOM05D002884 ORTHO05D003178 8.8e-06 56.2 104 30.8


User provided reference genes

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