Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G121700 Theobroma cacao HOM05D000003 ORTHO05D002259 2.2e-159 565.5 263 100.0
Thecc.06G083800 Theobroma cacao HOM05D000101 ORTHO05D000089 3.4e-43 179.5 243 41.2
Thecc.05G198700 Theobroma cacao HOM05D000003 ORTHO05D002259 8.3e-42 174.9 253 38.7
Thecc.09G263100 Theobroma cacao HOM05D000003 ORTHO05D002259 2.1e-37 160.2 208 38.0
Thecc.05G093100 Theobroma cacao HOM05D000003 ORTHO05D002259 6.2e-37 158.7 207 37.7
Thecc.09G083400 Theobroma cacao HOM05D014430 ORTHO05D002259 4.6e-32 142.5 206 37.4
Thecc.05G076400 Theobroma cacao HOM05D000003 ORTHO05D002259 2.4e-28 130.2 192 33.9
Thecc.04G054400 Theobroma cacao HOM05D000003 ORTHO05D002259 7.6e-27 125.2 175 37.1
COL.COLO4_27741 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.9e-25 120.6 162 42.0
Thecc.04G115600 Theobroma cacao HOM05D000003 ORTHO05D002259 2.7e-24 116.7 243 29.6
Thecc.05G092100 Theobroma cacao HOM05D000003 ORTHO05D002259 6.0e-24 115.5 239 28.5
Thecc.04G117300 Theobroma cacao HOM05D000003 ORTHO05D002259 1.7e-23 114.0 146 43.8
Thecc.02G298600 Theobroma cacao HOM05D029474 ORTHO05D002259 2.3e-23 113.6 146 35.6
Thecc.09G168800 Theobroma cacao HOM05D000003 ORTHO05D002259 8.7e-23 111.7 164 37.2
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 3.3e-22 109.8 148 37.2
Thecc.01G196800 Theobroma cacao HOM05D000003 ORTHO05D002259 4.3e-22 109.4 196 32.7
Thecc.05G035100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.3e-21 107.8 145 35.9
Thecc.K0005100 Theobroma cacao HOM05D000003 ORTHO05D002259 3.6e-21 106.3 159 32.7
COL.COLO4_22651 Corchorus olitorius HOM05D000003 ORTHO05D002259 6.2e-21 105.5 162 37.0
TWI36G1780 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.4e-20 104.4 303 25.1
Hma1.2p1_1754F.1_g300945 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.8e-20 104.0 224 31.2
COL.COLO4_36005 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.2e-19 101.3 154 37.0
Thecc.07G154300 Theobroma cacao HOM05D000003 ORTHO05D002259 2.0e-19 100.5 94 37.2
COL.COLO4_23441 Corchorus olitorius HOM05D000003 ORTHO05D002259 7.6e-19 98.6 154 34.4
Thecc.01G176600 Theobroma cacao HOM05D000003 ORTHO05D002259 7.6e-19 98.6 220 28.6
Atru.chr11.644 Acer truncatum HOM05D000003 ORTHO05D000004 6.4e-18 95.5 208 28.8
Thecc.05G094900 Theobroma cacao HOM05D000003 ORTHO05D002259 1.1e-17 94.7 128 39.8
COL.COLO4_22852 Corchorus olitorius HOM05D000003 ORTHO05D002259 2.4e-17 93.6 277 25.3
Thecc.04G262700 Theobroma cacao HOM05D000003 ORTHO05D002259 3.2e-17 93.2 147 38.1
Thecc.08G107500 Theobroma cacao HOM05D000003 ORTHO05D002259 3.2e-17 93.2 246 26.8
COL.COLO4_20696 Corchorus olitorius HOM05D000003 ORTHO05D002259 4.2e-17 92.8 164 37.2
Hma1.2p1_0055F.1_g031300 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.2e-16 91.3 200 27.5
Thecc.10G164000 Theobroma cacao HOM05D000003 ORTHO05D002259 1.2e-16 91.3 102 42.2
Atru.chr2.3295 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-16 90.9 212 26.9
Atru.chr9.316 Acer truncatum HOM05D000003 ORTHO05D002259 3.5e-16 89.7 202 27.2
Atru.chr11.1073 Acer truncatum HOM05D000003 ORTHO05D002259 2.3e-15 87.0 207 26.6
Gohir.A06G181801 Gossypium hirsutum HOM05D014430 ORTHO05D002259 3.9e-15 86.3 140 36.4
Atru.chr12.2402 Acer truncatum HOM05D000003 ORTHO05D002259 1.1e-14 84.7 208 26.0
Thecc.06G134300 Theobroma cacao HOM05D014430 ORTHO05D002259 1.5e-14 84.3 88 40.9
Thecc.06G078500 Theobroma cacao HOM05D029474 ORTHO05D036048 1.9e-14 84.0 146 30.1
Thecc.05G083000 Theobroma cacao HOM05D000003 ORTHO05D002259 2.5e-14 83.6 126 33.3
Thecc.05G155300 Theobroma cacao HOM05D014430 ORTHO05D002259 3.3e-14 83.2 107 38.3
COL.COLO4_32709 Corchorus olitorius HOM05D000003 ORTHO05D002259 4.3e-14 82.8 69 56.5
Gohir.D07G031150 Gossypium hirsutum HOM05D014430 ORTHO05D002259 4.3e-14 82.8 128 36.7
Gorai.001G032500 Gossypium raimondii HOM05D014430 ORTHO05D002259 4.3e-14 82.8 128 36.7
Thecc.03G002300 Theobroma cacao HOM05D000003 ORTHO05D002259 4.3e-14 82.8 124 37.1
Atru.chr5.3360 Acer truncatum HOM05D000003 ORTHO05D002259 7.4e-14 82.0 208 26.4
Gohir.D06G188501 Gossypium hirsutum HOM05D014430 ORTHO05D002259 7.4e-14 82.0 162 30.9
Gorai.010G220900 Gossypium raimondii HOM05D014430 ORTHO05D002259 7.4e-14 82.0 162 31.5
Thecc.02G168800 Theobroma cacao HOM05D000003 ORTHO05D002259 9.6e-14 81.6 156 29.5
Thecc.04G103900 Theobroma cacao HOM05D000003 ORTHO05D002259 1.3e-13 81.3 162 32.7
TWI39G0070 Tripterygium wilfordii HOM05D000003 ORTHO05D002259 3.7e-13 79.7 291 25.8
Atru.chr11.2510 Acer truncatum HOM05D000003 ORTHO05D000004 8.1e-13 78.6 255 22.4
Atru.chr4.3084 Acer truncatum HOM05D000003 ORTHO05D000004 8.1e-13 78.6 207 25.1
Atru.chr8.2073 Acer truncatum HOM05D000003 ORTHO05D000004 8.1e-13 78.6 185 28.1
Atru.chr4.1942 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-12 78.2 207 28.0
Thecc.10G061600 Theobroma cacao HOM05D000003 ORTHO05D002259 1.1e-12 78.2 136 30.9
Atru.chr10.984 Acer truncatum HOM05D000502 ORTHO05D002259 1.8e-12 77.4 179 28.5
Atru.chr6.1197 Acer truncatum HOM05D000003 ORTHO05D002259 1.8e-12 77.4 207 23.2
Atru.chr6.713 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-12 77.0 187 28.3
Thecc.02G247200 Theobroma cacao HOM05D000003 ORTHO05D002259 3.1e-12 76.6 115 34.8
TWI36G1756 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 5.3e-12 75.9 251 26.7
Atru.chr2.915 Acer truncatum HOM05D000003 ORTHO05D000004 6.9e-12 75.5 144 28.5
Atru.chr6.253 Acer truncatum HOM05D000003 ORTHO05D002259 6.9e-12 75.5 201 28.9
Atru.chr7.607 Acer truncatum HOM05D000003 ORTHO05D002259 9.0e-12 75.1 256 26.2
Hma1.2p1_1241F.1_g269710 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 9.0e-12 75.1 67 49.3
Thecc.02G058700 Theobroma cacao HOM05D000003 ORTHO05D002259 9.0e-12 75.1 126 29.4
Thecc.06G140500 Theobroma cacao HOM05D000003 ORTHO05D002259 1.2e-11 74.7 91 40.7
Thecc.09G040100 Theobroma cacao HOM05D000682 ORTHO05D000510 1.2e-11 74.7 79 41.8
Atru.chr6.296 Acer truncatum HOM05D000003 ORTHO05D002259 3.4e-11 73.2 300 22.3
Thecc.06G100900 Theobroma cacao HOM05D000003 ORTHO05D002259 3.4e-11 73.2 69 49.3
Thecc.07G153900 Theobroma cacao HOM05D000003 ORTHO05D002259 3.4e-11 73.2 142 32.4
Atru.chr1.3974 Acer truncatum HOM05D000003 ORTHO05D000004 4.5e-11 72.8 203 26.1
Atru.chr10.950 Acer truncatum HOM05D000003 ORTHO05D002259 4.5e-11 72.8 146 30.1
Thecc.02G166000 Theobroma cacao HOM05D000003 ORTHO05D002259 4.5e-11 72.8 213 27.2
Atru.chr7.96 Acer truncatum HOM05D000003 ORTHO05D002259 5.8e-11 72.4 183 24.0
CSS0006262 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.8e-11 72.4 91 31.9
Duzib264G0111 Durio zibethinus HOM05D000003 ORTHO05D002259 5.8e-11 72.4 176 29.0
Thecc.03G016300 Theobroma cacao HOM05D000003 ORTHO05D002259 5.8e-11 72.4 110 38.2
Thecc.04G000700 Theobroma cacao HOM05D000003 ORTHO05D002259 5.8e-11 72.4 131 32.1
Atru.chr5.2369 Acer truncatum HOM05D000003 ORTHO05D002259 7.6e-11 72.0 207 22.7
Hma1.2p1_3154F.1_g333360 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.3e-10 71.2 90 40.0
Thecc.06G163100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.3e-10 71.2 129 32.6
Atru.chr1.1674 Acer truncatum HOM05D000003 ORTHO05D002259 1.7e-10 70.9 204 26.0
CSS0001040 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.7e-10 70.9 99 30.3
COL.COLO4_22772 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.7e-10 70.9 134 32.1
Atru.chr6.413 Acer truncatum HOM05D000003 ORTHO05D002259 2.9e-10 70.1 207 25.6
Hma1.2p1_0585F.1_g183600 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 2.9e-10 70.1 68 48.5
Atru.chr4.1973 Acer truncatum HOM05D000003 ORTHO05D002259 3.8e-10 69.7 205 21.5
COL.COLO4_11284 Corchorus olitorius HOM05D000003 ORTHO05D002259 3.8e-10 69.7 127 33.1
Atru.chr2.2563 Acer truncatum HOM05D000003 ORTHO05D002259 4.9e-10 69.3 169 26.6
Atru.chr7.381 Acer truncatum HOM05D000003 ORTHO05D002259 4.9e-10 69.3 192 24.0
CSS0014107 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 6.4e-10 68.9 96 30.2
CSS0001091 Camellia sinensis var. sinensis HOM05D039892 ORTHO05D013815 8.4e-10 68.6 99 29.3
CSS0008549 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 8.4e-10 68.6 99 31.3
CSS0019468 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 8.4e-10 68.6 96 30.2
COL.COLO4_37965 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.1e-09 68.2 61 55.7
Atru.chr4.2622 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-09 67.8 181 23.2
COL.COLO4_35424 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.4e-09 67.8 69 40.6
Atru.chr1.2408 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-09 67.0 207 23.7
Gohir.A09G072500 Gossypium hirsutum HOM05D008457 ORTHO05D011002 2.4e-09 67.0 195 26.7
Hma1.2p1_0704F.1_g206855 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 2.4e-09 67.0 173 32.4
Hma1.2p1_0704F.1_g206860 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 2.4e-09 67.0 173 32.4
Thecc.09G159600 Theobroma cacao HOM05D000003 ORTHO05D002259 2.4e-09 67.0 64 48.4
CSS0007673 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.2e-09 66.6 89 29.2
Atru.chr2.1980 Acer truncatum HOM05D000003 ORTHO05D000004 4.2e-09 66.2 180 28.3
Thecc.04G101600 Theobroma cacao HOM05D000003 ORTHO05D002259 4.2e-09 66.2 69 46.4
Atru.chr6.184 Acer truncatum HOM05D000003 ORTHO05D002259 5.5e-09 65.9 207 23.7
CSS0002270 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 7.1e-09 65.5 93 31.2
Atru.chr5.2215 Acer truncatum HOM05D000003 ORTHO05D002259 9.3e-09 65.1 203 25.1
Atru.chr1.3846 Acer truncatum HOM05D000003 ORTHO05D002259 1.2e-08 64.7 165 28.5
TWI74G1163 Tripterygium wilfordii HOM05D000003 ORTHO05D002259 1.2e-08 64.7 97 30.9
CSS0005179 Camellia sinensis var. sinensis HOM05D012301 ORTHO05D013815 2.1e-08 63.9 97 28.9
Atru.chr1.3206 Acer truncatum HOM05D000003 ORTHO05D002259 3.5e-08 63.2 201 24.9
Gohir.D09G049133 Gossypium hirsutum HOM05D029474 ORTHO05D036048 3.5e-08 63.2 103 29.1
Thecc.02G248900 Theobroma cacao HOM05D000003 ORTHO05D000004 6.0e-08 62.4 92 32.6
Thecc.04G004700 Theobroma cacao HOM05D000003 ORTHO05D002259 7.9e-08 62.0 49 57.1
Atru.chr2.584 Acer truncatum HOM05D000003 ORTHO05D002259 1.0e-07 61.6 164 34.1
Atru.chr4.1523 Acer truncatum HOM05D000003 ORTHO05D002259 1.0e-07 61.6 171 26.9
CSS0005869 Camellia sinensis var. sinensis HOM05D012301 ORTHO05D013815 1.8e-07 60.8 97 28.9
Hma1.2p1_0460F.1_g157390 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.8e-07 60.8 162 27.2
Atru.chr2.2547 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-07 60.1 267 23.2
Atru.chr3.3329 Acer truncatum HOM05D000003 ORTHO05D002259 3.0e-07 60.1 207 22.7
COL.COLO4_05156 Corchorus olitorius HOM05D001120 ORTHO05D002943 3.0e-07 60.1 115 31.3
Thecc.09G079600 Theobroma cacao HOM05D000003 ORTHO05D002259 3.0e-07 60.1 107 34.6
Gorai.006G060800 Gossypium raimondii HOM05D029474 ORTHO05D036048 3.9e-07 59.7 97 28.9
Hma1.2p1_0731F.1_g209885 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 3.9e-07 59.7 162 30.2
Hma1.2p1_1414F.1_g281865 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 3.9e-07 59.7 162 30.2
Hma1.2p1_2732F.1_g327655 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 3.9e-07 59.7 162 30.2
TWI34G1270 Tripterygium wilfordii HOM05D000003 ORTHO05D002259 3.9e-07 59.7 252 24.2
Gohir.A07G027150 Gossypium hirsutum HOM05D014430 ORTHO05D002259 5.1e-07 59.3 111 33.3
Thecc.03G203500 Theobroma cacao HOM05D028133 ORTHO05D002259 5.1e-07 59.3 130 32.3
Thecc.06G027200 Theobroma cacao HOM05D000003 ORTHO05D002259 6.7e-07 58.9 54 50.0
TWI14G0536 Tripterygium wilfordii HOM05D008457 ORTHO05D002259 6.7e-07 58.9 190 23.7
Atru.chr3.3914 Acer truncatum HOM05D000003 ORTHO05D002259 8.7e-07 58.5 184 25.5
Atru.chr4.3157 Acer truncatum HOM05D000003 ORTHO05D002259 8.7e-07 58.5 149 26.8
Hma1.2p1_0024F.1_g016160 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 8.7e-07 58.5 159 30.2
Hma1.2p1_3886F.1_g337920 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 8.7e-07 58.5 138 29.0
PSO421G0296 Papaver somniferum HOM05D000003 ORTHO05D000004 8.7e-07 58.5 89 29.2
Thecc.04G207500 Theobroma cacao HOM05D028133 ORTHO05D002259 8.7e-07 58.5 69 47.8
Thecc.08G046700 Theobroma cacao HOM05D000524 ORTHO05D000381 8.7e-07 58.5 56 44.6
Atru.chr12.2307 Acer truncatum HOM05D000003 ORTHO05D002259 1.1e-06 58.2 210 23.3
CSS0038721 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 1.1e-06 58.2 87 31.0
Thecc.08G171000 Theobroma cacao HOM05D000003 ORTHO05D002259 1.1e-06 58.2 53 50.9
Atru.chr11.133 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-06 57.8 185 23.2
Atru.chr2.2918 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-06 57.8 183 24.6
COL.COLO4_24328 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.5e-06 57.8 119 27.7
Hma1.2p1_0353F.1_g133190 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.5e-06 57.8 162 31.5
MBI15_g00074_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 1.5e-06 57.8 89 31.5
Atru.chr6.295 Acer truncatum HOM05D000003 ORTHO05D002259 1.9e-06 57.4 206 22.3
Atru.chr9.664 Acer truncatum HOM05D000003 ORTHO05D002259 1.9e-06 57.4 163 30.1
Gohir.A02G009132 Gossypium hirsutum HOM05D008457 ORTHO05D011002 1.9e-06 57.4 214 22.9
Thecc.08G170700 Theobroma cacao HOM05D000003 ORTHO05D002259 1.9e-06 57.4 51 41.2
Atru.chr1.787 Acer truncatum HOM05D002354 ORTHO05D002259 2.5e-06 57.0 206 21.8
CSS0045379 Camellia sinensis var. sinensis HOM05D012301 ORTHO05D013815 2.5e-06 57.0 97 27.8
Gohir.A08G216533 Gossypium hirsutum HOM05D008457 ORTHO05D011002 2.5e-06 57.0 201 27.9
Sopen00g001100 Solanum pennellii HOM05D000003 ORTHO05D000004 2.5e-06 57.0 153 28.1
Thecc.02G184900 Theobroma cacao HOM05D000658 ORTHO05D002259 2.5e-06 57.0 140 27.9
Thecc.06G027000 Theobroma cacao HOM05D000003 ORTHO05D002259 2.5e-06 57.0 59 42.4
CSS0039659 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 3.3e-06 56.6 65 32.3
Peaxi162Scf00236g00081 Petunia axillaris HOM05D000155 ORTHO05D000022 3.3e-06 56.6 183 27.3
CSS0039930 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.3e-06 56.2 67 29.9
SEGI_35567 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 4.3e-06 56.2 67 34.3
Thecc.07G150400 Theobroma cacao HOM05D000003 ORTHO05D002259 4.3e-06 56.2 53 54.7
Atru.chr13.2301 Acer truncatum HOM05D000003 ORTHO05D002259 5.6e-06 55.8 167 25.1
CSS0022483 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.6e-06 55.8 67 29.9
CSS0034649 Camellia sinensis var. sinensis HOM05D012301 ORTHO05D013815 5.6e-06 55.8 71 33.8
Hma1.2p1_0564F.1_g179340 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 5.6e-06 55.8 161 32.3
MBI11_g01322_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 5.6e-06 55.8 67 34.3
Thecc.02G054100 Theobroma cacao HOM05D000003 ORTHO05D002259 5.6e-06 55.8 44 52.3
CSS0015726 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 7.4e-06 55.5 105 25.7
MBI06_g05819_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.4e-06 55.5 194 27.8
Sopen01g016010 Solanum pennellii HOM05D000003 ORTHO05D000022 7.4e-06 55.5 181 28.2
Sopen09g012310 Solanum pennellii HOM05D000003 ORTHO05D000004 7.4e-06 55.5 183 27.3
Atru.chr7.902 Acer truncatum HOM05D000003 ORTHO05D002259 9.6e-06 55.1 68 36.8
COL.COLO4_05921 Corchorus olitorius HOM05D008457 ORTHO05D029079 9.6e-06 55.1 90 32.2
PSO170G5621 Papaver somniferum HOM05D000003 ORTHO05D000004 9.6e-06 55.1 89 25.8
Thecc.09G223500 Theobroma cacao HOM05D009258 ORTHO05D000006 9.6e-06 55.1 35 57.1


User provided reference genes

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