Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G073000 Theobroma cacao HOM05D007405 ORTHO05D009256 1.1e-111 408.3 673 100.0
Duzib147G0736 Durio zibethinus HOM05D007405 ORTHO05D009256 4.3e-74 283.5 185 80.5
Gohir.A07G215301 Gossypium hirsutum HOM05D007405 ORTHO05D009256 3.6e-73 280.4 668 91.6
Gohir.D07G222200 Gossypium hirsutum HOM05D007405 ORTHO05D009256 1.8e-72 278.1 668 91.5
Gorai.001G256500 Gossypium raimondii HOM05D007405 ORTHO05D009256 1.8e-72 278.1 668 91.5
Prupe.3G273600 Prunus persica HOM05D007405 ORTHO05D009256 4.7e-49 200.3 673 68.8
COL.COLO4_25223 Corchorus olitorius HOM05D000330 ORTHO05D000209 1.5e-47 195.3 588 65.6
Haze_14594 Corylus avellana HOM05D007405 ORTHO05D009256 3.4e-47 194.1 187 58.3
AL7G50110 Arabidopsis lyrata HOM05D007405 ORTHO05D009256 4.4e-47 193.7 182 58.8
Ciclev10011224m.g Citrus clementina HOM05D007405 ORTHO05D009256 5.8e-47 193.4 184 58.2
Cfa007501 Carpinus fangiana HOM05D007405 ORTHO05D009256 7.6e-47 193.0 187 57.8
CiPaw.04G020600 Carya illinoinensis HOM05D007405 ORTHO05D009256 4.9e-46 190.3 195 54.4
AT5G39980 Arabidopsis thaliana HOM05D007405 ORTHO05D009256 1.4e-45 188.7 180 57.8
MD09G1044200 Malus domestica HOM05D007405 ORTHO05D009256 1.2e-44 185.7 183 54.6
QL02p079911 Quercus lobata HOM05D007405 ORTHO05D009256 2.1e-44 184.9 180 55.0
A07p20170 Brassica napus HOM05D007405 ORTHO05D009256 7.8e-44 183.0 173 57.2
ClCG10G014780 Citrullus lanatus HOM05D007405 ORTHO05D009256 7.8e-44 183.0 680 77.4
Oeu027767.1 Olea europaea HOM05D007405 ORTHO05D009256 7.8e-44 183.0 620 83.1
CANSAT64G0564 Cannabis sativa HOM05D007405 ORTHO05D009256 1.7e-43 181.8 168 54.8
BcaC08g44440 Brassica carinata HOM05D007405 ORTHO05D009256 3.0e-43 181.0 179 55.3
C06p18840 Brassica napus HOM05D007405 ORTHO05D009256 3.0e-43 181.0 179 55.3
BolC6t37089H Brassica oleracea HOM05D007405 ORTHO05D009256 3.0e-43 181.0 179 55.3
BraA07t29716Z Brassica rapa HOM05D007405 ORTHO05D009256 3.0e-43 181.0 173 56.6
Potri.017G075700 Populus trichocarpa HOM05D007405 ORTHO05D009256 3.0e-43 181.0 167 58.7
Thhalv10028245m.g Eutrema salsugineum HOM05D007405 ORTHO05D009256 3.9e-43 180.6 186 54.3
Lj6g0001930 Lotus japonicus HOM05D007405 ORTHO05D009256 8.7e-43 179.5 132 63.6
THA.LOC104823926 Tarenaya hassleriana HOM05D007405 ORTHO05D009256 1.1e-42 179.1 190 53.7
Sabra17G0067600 Salix brachista HOM05D007405 ORTHO05D009256 1.5e-42 178.7 167 57.5
Manes.17G025500 Manihot esculenta HOM05D007405 ORTHO05D009256 2.5e-42 177.9 165 55.2
GSVIVG01032591001 Vitis vinifera HOM05D007405 ORTHO05D009256 2.5e-42 177.9 678 82.4
Atru.chr8.2441 Acer truncatum HOM05D007405 ORTHO05D009256 5.6e-42 176.8 166 57.2
AUR62018305 Chenopodium quinoa HOM05D007405 ORTHO05D009256 1.3e-41 175.6 154 58.4
AUR62030576 Chenopodium quinoa HOM05D007405 ORTHO05D009256 1.3e-41 175.6 154 58.4
Migut.H00884 Erythranthe guttata HOM05D007405 ORTHO05D009256 1.6e-41 175.3 151 58.9
CSS0008879 Camellia sinensis var. sinensis HOM05D007405 ORTHO05D009256 2.1e-41 174.9 561 76.8
CAN.G206.101 Capsicum annuum HOM05D007405 ORTHO05D009256 4.8e-41 173.7 185 51.9
Lsat_1_v5_gn_2_90480 Lactuca sativa HOM05D007405 ORTHO05D009256 4.8e-41 173.7 137 63.5
MSTRG.19401 Avicennia marina HOM05D007405 ORTHO05D009256 6.2e-41 173.3 161 57.1
Sp7g02090 Schrenkiella parvula HOM05D007405 ORTHO05D009256 8.1e-41 172.9 181 54.1
Sed0003758 Sechium edule HOM05D007405 ORTHO05D009256 8.1e-41 172.9 566 75.8
Aa31LG9G1630 Aethionema arabicum HOM05D000330 ORTHO05D009256 1.1e-40 172.6 185 53.5
MELO3C009896.2 Cucumis melo HOM05D007405 ORTHO05D009256 1.1e-40 172.6 564 76.6
Nitab4.5_0002265g0130 Nicotiana tabacum HOM05D007405 ORTHO05D009256 1.8e-40 171.8 174 51.1
Ah.10g031180 Amaranthus hybridus HOM05D007405 ORTHO05D009256 4.0e-40 170.6 144 59.7
CsaV3_3G041760 Cucumis sativus L. HOM05D007405 ORTHO05D009256 4.0e-40 170.6 190 48.9
FAN02G3519 Fragaria x ananassa HOM05D007405 ORTHO05D009256 4.0e-40 170.6 677 78.1
EL10Ac2g02615 Beta vulgaris HOM05D007405 ORTHO05D009256 5.3e-40 170.2 148 57.4
Sopen02g032330 Solanum pennellii HOM05D007405 ORTHO05D009256 5.3e-40 170.2 187 50.8
BcaB02g07958 Brassica carinata HOM05D007405 ORTHO05D009256 6.9e-40 169.9 176 52.3
FvH4_6g49520 Fragaria vesca HOM05D007405 ORTHO05D009256 1.2e-39 169.1 662 82.2
FAN14G0904 Fragaria x ananassa HOM05D007405 ORTHO05D009256 1.2e-39 169.1 188 52.1
FAN14G4765 Fragaria x ananassa HOM05D007405 ORTHO05D009256 1.2e-39 169.1 188 52.1
Solyc02g087560.1 Solanum lycopersicum HOM05D007405 ORTHO05D009256 1.2e-39 169.1 175 51.4
CARHR262150 Cardamine hirsuta HOM05D007405 ORTHO05D009256 1.5e-39 168.7 188 52.1
Glyma.18G000700 Glycine max HOM05D007405 ORTHO05D009256 2.6e-39 167.9 143 56.6
FAN02G3321 Fragaria x ananassa HOM05D007405 ORTHO05D009256 5.8e-39 166.8 188 50.5
HanXRQChr14g0449381 Helianthus annuus HOM05D007405 ORTHO05D009256 7.6e-39 166.4 139 57.6
VMungo1383G1541 Vigna mungo HOM05D007405 ORTHO05D009256 1.3e-38 165.6 159 52.8
FAN09G1987 Fragaria x ananassa HOM05D007405 ORTHO05D009256 2.9e-38 164.5 188 50.0
CSS0011088 Camellia sinensis var. sinensis HOM05D007405 ORTHO05D009256 4.9e-38 163.7 476 85.5
Dinv33696 Davidia involucrata HOM05D007405 ORTHO05D009256 6.4e-38 163.3 182 51.1
TWI56G0828 Tripterygium wilfordii HOM05D007405 ORTHO05D009256 6.4e-38 163.3 167 53.3
FAN05G4748 Fragaria x ananassa HOM05D007405 ORTHO05D009256 8.4e-38 162.9 171 52.6
RcHm_v2.0_Chr2g0169431 Rosa chinensis HOM05D007405 ORTHO05D009256 1.1e-37 162.5 135 60.7
Carub.0007s3571 Capsella rubella HOM05D007405 ORTHO05D009256 2.4e-37 161.4 179 50.8
DCAR_011169 Daucus carota HOM05D007405 ORTHO05D009256 4.2e-37 160.6 156 55.8
Psat5g105040 Pisum sativum HOM05D007405 ORTHO05D009256 7.1e-37 159.8 193 47.2
Lalb_Chr23g0278451 Lupinus albus HOM05D007405 ORTHO05D009256 9.3e-37 159.5 153 56.9
PGR031G2628 Punica granatum HOM05D007405 ORTHO05D009256 1.2e-36 159.1 114 65.8
Ca_16386_v3 Cicer arietinum L. HOM05D007405 ORTHO05D009256 4.6e-36 157.1 155 49.7
Ca_29700_v3 Cicer arietinum L. HOM05D007405 ORTHO05D009256 4.6e-36 157.1 155 49.7
Glyma.11G256300 Glycine max HOM05D007405 ORTHO05D009256 4.6e-36 157.1 149 52.3
TAR039G0001 Trochodendron aralioides HOM05D002295 ORTHO05D002789 2.3e-35 154.8 197 46.7
SGA_v2.0_scaffold115G32153 Striga asiatica HOM05D007405 ORTHO05D009256 3.0e-35 154.5 140 55.0
Lj7A402T45 Lonicera japonica HOM05D007405 ORTHO05D009256 3.9e-35 154.1 154 53.2
Nn1g09226 Nelumbo nucifera HOM05D007405 ORTHO05D009256 5.1e-35 153.7 162 50.0
Actinidia36037 Actinidia chinensis HOM05D007405 ORTHO05D009256 8.7e-35 152.9 181 46.4
Sc11g0006880 Simmondsia chinensis HOM05D007405 ORTHO05D009256 8.7e-35 152.9 177 52.0
PSO832G3067 Papaver somniferum HOM05D007405 ORTHO05D009256 1.1e-34 152.5 208 43.3
Medtr3g083680 Medicago truncatula HOM05D007405 ORTHO05D009256 1.9e-34 151.8 105 66.7
Cpa.g.sc14.54 Carica papaya HOM05D007405 ORTHO05D009256 4.3e-34 150.6 95 73.7
TPR.G22753 Trifolium pratense HOM05D007405 ORTHO05D009256 4.3e-34 150.6 146 52.1
PSO591G0419 Papaver somniferum HOM05D007405 ORTHO05D009256 1.1e-32 146.0 159 49.1
Cc07_g02870 Coffea canephora HOM05D007405 ORTHO05D009256 6.9e-32 143.3 96 66.7
Rhsim10G0030900 Rhododendron simsii HOM05D007405 ORTHO05D009256 7.6e-31 139.8 95 68.4
PGSC0003DMG400001306 Solanum tuberosum HOM05D007405 ORTHO05D009256 2.9e-30 137.9 96 64.6
Phvul.001G268500 Phaseolus vulgaris HOM05D007405 ORTHO05D009256 1.3e-25 122.5 68 83.8
Peaxi162Scf00129g00512 Petunia axillaris HOM05D007405 ORTHO05D009256 4.8e-25 120.6 184 83.7
MBI08_g09795_MAGBIO Magnolia biondii HOM05D007405 ORTHO05D009256 2.0e-23 115.2 68 77.9
ATR1127G129 Amborella trichopoda HOM05D007405 ORTHO05D009256 1.0e-22 112.8 128 46.9
Nitab4.5_0000564g0400 Nicotiana tabacum HOM05D007405 ORTHO05D009256 2.2e-22 111.7 184 83.2
CDE06G2170 Ceratophyllum demersum HOM05D007405 ORTHO05D009256 4.9e-22 110.5 68 76.5
Pp3c3_5760 Physcomitrium patens HOM05D007405 ORTHO05D009256 4.2e-21 107.5 102 47.1
Pp3c3_5764 Physcomitrium patens HOM05D007405 ORTHO05D009256 4.2e-21 107.5 102 47.1
AagrBONN_evm.TU.Sc2ySwM_117.2241 Anthoceros agrestis HOM05D007405 ORTHO05D009256 1.0e-19 102.8 101 46.5
Mapoly0061s0076 Marchantia polymorpha HOM05D007405 ORTHO05D009256 8.7e-19 99.8 147 39.5
SEGI_22031 Sequoiadendron giganteum HOM05D007405 ORTHO05D009256 1.1e-18 99.4 101 42.6
Os01g0833000 Oryza sativa ssp. japonica HOM05D007405 ORTHO05D009256 1.2e-15 89.4 66 56.1
Zm00001eb148940 Zea mays HOM05D007405 ORTHO05D009256 2.6e-15 88.2 66 56.1
Eucgr.J02141 Eucalyptus grandis HOM05D007405 ORTHO05D009256 3.4e-15 87.8 53 75.5
HPP92_019727 Vanilla planifolia HOM05D007405 ORTHO05D009256 3.8e-14 84.3 142 35.9
SMO367G0452 Selaginella moellendorffii HOM05D007405 ORTHO05D009256 2.3e-11 75.1 55 60.0
FAN02G2814 Fragaria x ananassa HOM05D007405 ORTHO05D009256 9.7e-10 69.7 39 79.5
Actinidia06062 Actinidia chinensis HOM05D007405 ORTHO05D009256 2.4e-08 65.1 55 63.6
Actinidia06059 Actinidia chinensis HOM05D007405 ORTHO05D009256 2.6e-07 61.6 55 60.0
CANSAT78G2316 Cannabis sativa HOM05D002479 ORTHO05D002675 8.5e-06 56.6 81 30.9


User provided reference genes

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