Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G065700 Theobroma cacao HOM05D002552 ORTHO05D002700 1.4e-145 519.6 270 100.0
COL.COLO4_37018 Corchorus olitorius HOM05D002552 ORTHO05D002700 4.5e-59 232.3 170 71.8
Gorai.012G058300 Gossypium raimondii HOM05D002552 ORTHO05D002700 1.8e-52 210.3 174 64.9
Gohir.D04G052100 Gossypium hirsutum HOM05D002552 ORTHO05D002700 1.5e-49 200.7 174 63.2
Gohir.A05G362300 Gossypium hirsutum HOM05D002552 ORTHO05D002700 4.7e-48 195.7 174 63.2
Dinv35005 Davidia involucrata HOM05D000629 ORTHO05D000576 2.3e-34 150.2 187 45.5
CiPaw.04G021800 Carya illinoinensis HOM05D002552 ORTHO05D002700 7.3e-33 145.2 173 49.7
Haze_14613 Corylus avellana HOM05D000629 ORTHO05D000576 4.0e-31 139.4 172 52.3
QL02p078997 Quercus lobata HOM05D002552 ORTHO05D002700 2.6e-30 136.7 175 49.7
Atru.chr6.2167 Acer truncatum HOM05D002552 ORTHO05D002700 5.4e-28 129.0 167 45.5
TAR622G0500 Trochodendron aralioides HOM05D002552 ORTHO05D002700 1.3e-26 124.4 167 49.1
MD09G1041200 Malus domestica HOM05D002552 ORTHO05D002700 6.6e-26 122.1 178 43.3
Prupe.3G276400 Prunus persica HOM05D002552 ORTHO05D002700 3.1e-23 113.2 177 41.2
FAN05G0354 Fragaria x ananassa HOM05D002552 ORTHO05D002700 8.9e-23 111.7 168 42.9
MBI15_g23246_MAGBIO Magnolia biondii HOM05D002552 ORTHO05D002700 1.2e-22 111.3 179 41.3
CSS0027214 Camellia sinensis var. sinensis HOM05D002552 ORTHO05D002700 1.5e-22 110.9 171 42.7
RcHm_v2.0_Chr2g0169941 Rosa chinensis HOM05D002552 ORTHO05D002700 2.0e-22 110.5 168 42.3
FvH4_6g49800 Fragaria vesca HOM05D002552 ORTHO05D002700 2.6e-22 110.2 168 42.3
FAN14G1601 Fragaria x ananassa HOM05D002552 ORTHO05D002700 2.6e-22 110.2 168 42.3
Nn3g17049 Nelumbo nucifera HOM05D002552 ORTHO05D002700 3.4e-22 109.8 181 44.2
Aqoxy3G03149 Aquilegia oxysepala HOM05D002552 ORTHO05D002700 4.4e-22 109.4 163 47.9
CSS0008001 Camellia sinensis var. sinensis HOM05D002552 ORTHO05D002700 4.4e-22 109.4 171 42.1
FAN09G2339 Fragaria x ananassa HOM05D002552 ORTHO05D002700 9.8e-22 108.2 167 41.3
TAR371G0714 Trochodendron aralioides HOM05D000629 ORTHO05D000576 9.8e-22 108.2 169 50.3
GSVIVG01032580001 Vitis vinifera HOM05D002552 ORTHO05D002700 1.9e-20 104.0 163 46.6
Nn4g22949 Nelumbo nucifera HOM05D002552 ORTHO05D002700 3.2e-20 103.2 168 44.0
FAN02G1473 Fragaria x ananassa HOM05D002552 ORTHO05D002700 4.1e-20 102.8 168 41.1
MBI14_g06364_MAGBIO Magnolia biondii HOM05D002552 ORTHO05D002700 1.2e-19 101.3 177 41.8
PSO161G0102 Papaver somniferum HOM05D002552 ORTHO05D002700 3.0e-18 96.7 191 39.8
TPR.G32603 Trifolium pratense HOM05D002552 ORTHO05D002700 3.9e-18 96.3 168 36.9
Lj2g0018699 Lotus japonicus HOM05D002552 ORTHO05D002700 5.1e-18 95.9 181 38.7
Dinv13125 Davidia involucrata HOM05D002552 ORTHO05D002700 1.1e-17 94.7 177 44.1
Medtr6g008950 Medicago truncatula HOM05D002552 ORTHO05D002700 2.1e-16 90.5 169 34.3
TAR629G1864 Trochodendron aralioides HOM05D000629 ORTHO05D000576 1.4e-15 87.8 183 42.6
Aqoxy3G00866 Aquilegia oxysepala HOM05D002552 ORTHO05D002700 8.9e-15 85.1 167 34.7
THA.LOC104798973 Tarenaya hassleriana HOM05D002552 ORTHO05D002700 8.9e-15 85.1 178 37.6
Lju41C28T10 Lonicera japonica HOM05D002552 ORTHO05D002700 1.5e-14 84.3 166 38.0
Lalb_Chr08g0236111 Lupinus albus HOM05D002552 ORTHO05D002700 2.0e-14 84.0 171 42.1
Ca_04237_v3 Cicer arietinum L. HOM05D002552 ORTHO05D002700 7.6e-14 82.0 94 45.7
Psat1g078280 Pisum sativum HOM05D002552 ORTHO05D002700 9.9e-14 81.6 169 35.5
Hund16093 Selenicereus undatus HOM05D002552 ORTHO05D002700 6.4e-13 79.0 164 39.0
Lalb_Chr02g0159871 Lupinus albus HOM05D002552 ORTHO05D002700 8.4e-13 78.6 182 38.5
PSO478G3511 Papaver somniferum HOM05D002552 ORTHO05D002700 1.1e-12 78.2 191 36.6
SalBow5G5680 Salvia bowleyana HOM05D002552 ORTHO05D002700 1.1e-12 78.2 192 39.1
THA.LOC104821464 Tarenaya hassleriana HOM05D002552 ORTHO05D002700 1.1e-12 78.2 183 38.8
Ah.02g112830 Amaranthus hybridus HOM05D002552 ORTHO05D002700 1.9e-12 77.4 194 40.2
Ah.11g046320 Amaranthus hybridus HOM05D002552 ORTHO05D002700 1.9e-12 77.4 161 39.8
CARHR156800 Cardamine hirsuta HOM05D002552 ORTHO05D002700 1.9e-12 77.4 185 34.6
TWI60G0871 Tripterygium wilfordii HOM05D002552 ORTHO05D002700 1.9e-12 77.4 174 39.7
Carub.0005s1418 Capsella rubella HOM05D002552 ORTHO05D002700 2.4e-12 77.0 177 36.7
DCAR_011184 Daucus carota HOM05D002552 ORTHO05D002700 2.4e-12 77.0 164 37.2
THA.LOC104818224 Tarenaya hassleriana HOM05D002552 ORTHO05D002700 2.4e-12 77.0 181 35.9
Eucgr.K02893 Eucalyptus grandis HOM05D002552 ORTHO05D002700 3.2e-12 76.6 178 41.6
Lalb_Chr23g0273051 Lupinus albus HOM05D002552 ORTHO05D002700 3.2e-12 76.6 162 39.5
AL5G27400 Arabidopsis lyrata HOM05D002552 ORTHO05D002700 5.4e-12 75.9 182 36.3
arahy.Tifrunner.gnm1.ann1.4VQT28 Arachis hypogaea HOM05D002552 ORTHO05D002700 1.2e-11 74.7 193 34.2
arahy.Tifrunner.gnm1.ann1.JGQP5W Arachis hypogaea HOM05D002552 ORTHO05D002700 1.2e-11 74.7 193 34.2
Migut.D01900 Erythranthe guttata HOM05D002552 ORTHO05D002700 2.1e-11 73.9 199 40.2
Rhsim12G0160900 Rhododendron simsii HOM05D002552 ORTHO05D002700 2.1e-11 73.9 167 37.7
Thhalv10010506m.g Eutrema salsugineum HOM05D002552 ORTHO05D002700 2.7e-11 73.6 179 36.3
Sp5g13940 Schrenkiella parvula HOM05D002552 ORTHO05D002700 2.7e-11 73.6 185 33.5
Hund09399 Selenicereus undatus HOM05D002552 ORTHO05D002700 2.7e-11 73.6 207 35.3
CANSAT80G1172 Cannabis sativa HOM05D002552 ORTHO05D002700 3.5e-11 73.2 88 42.0
Hma1.2p1_0572F.1_g181040 Hydrangea macrophylla HOM05D002552 ORTHO05D002700 7.8e-11 72.0 170 38.2
Aa31LG4G16700 Aethionema arabicum HOM05D002552 ORTHO05D002700 1.0e-10 71.6 181 36.5
Lsat_1_v5_gn_5_18201 Lactuca sativa HOM05D002552 ORTHO05D002700 1.0e-10 71.6 182 40.1
Sed0003261 Sechium edule HOM05D002552 ORTHO05D002700 1.0e-10 71.6 159 37.7
vmacro16581 Vaccinium macrocarpon HOM05D002552 ORTHO05D002700 1.0e-10 71.6 165 38.8
AT3G48070 Arabidopsis thaliana HOM05D002552 ORTHO05D002700 1.3e-10 71.2 180 34.4
MSTRG.4391 Avicennia marina HOM05D002552 ORTHO05D002700 1.7e-10 70.9 189 38.6
ECA246G1618 Erigeron canadensis HOM05D002552 ORTHO05D002700 1.7e-10 70.9 158 36.7
Ca_21876_v3 Cicer arietinum L. HOM05D002552 ORTHO05D002700 3.0e-10 70.1 192 38.0
Ca_21883_v3 Cicer arietinum L. HOM05D002552 ORTHO05D002700 3.0e-10 70.1 192 38.0
Sc10g0010030 Simmondsia chinensis HOM05D002552 ORTHO05D002700 3.9e-10 69.7 157 33.8
Sc12g0005590 Simmondsia chinensis HOM05D002552 ORTHO05D002700 3.9e-10 69.7 175 34.3
VMungo0464G1861 Vigna mungo HOM05D002552 ORTHO05D002700 3.9e-10 69.7 175 33.1
Actinidia19071 Actinidia chinensis HOM05D002552 ORTHO05D002700 5.1e-10 69.3 188 37.8
Cpa.g.sc3042.1 Carica papaya HOM05D002552 ORTHO05D002700 5.1e-10 69.3 108 38.0
CiPaw.11G033600 Carya illinoinensis HOM05D002552 ORTHO05D002700 5.1e-10 69.3 267 32.2
Ciclev10020913m.g Citrus clementina HOM05D002552 ORTHO05D002700 6.6e-10 68.9 181 35.9
Eucgr.B00376 Eucalyptus grandis HOM05D002552 ORTHO05D002700 6.6e-10 68.9 98 41.8
FAN13G0872 Fragaria x ananassa HOM05D002552 ORTHO05D002700 6.6e-10 68.9 91 39.6
PGSC0003DMG400033057 Solanum tuberosum HOM05D002552 ORTHO05D002700 6.6e-10 68.9 94 38.3
CiPaw.12G022400 Carya illinoinensis HOM05D002552 ORTHO05D002700 1.1e-09 68.2 183 35.5
Actinidia37690 Actinidia chinensis HOM05D002552 ORTHO05D002700 1.5e-09 67.8 175 38.3
Dinv02655 Davidia involucrata HOM05D002552 ORTHO05D002700 1.5e-09 67.8 170 38.2
Thecc.03G002000 Theobroma cacao HOM05D002552 ORTHO05D002700 1.5e-09 67.8 181 40.3
arahy.Tifrunner.gnm1.ann1.XN0C9H Arachis hypogaea HOM05D002552 ORTHO05D002700 1.9e-09 67.4 97 39.2
VMungo1215G1056 Vigna mungo HOM05D002552 ORTHO05D002700 1.9e-09 67.4 188 34.6
FAN08G3627 Fragaria x ananassa HOM05D002552 ORTHO05D002700 2.5e-09 67.0 88 39.8
MSTRG.23075 Avicennia marina HOM05D002552 ORTHO05D002700 3.3e-09 66.6 168 35.1
Psat4g055800 Pisum sativum HOM05D002552 ORTHO05D002700 4.3e-09 66.2 192 36.5
Sabra15G0093700 Salix brachista HOM05D002552 ORTHO05D002700 4.3e-09 66.2 206 35.9
MSTRG.11414 Avicennia marina HOM05D002552 ORTHO05D002700 5.6e-09 65.9 159 40.3
A06p19600 Brassica napus HOM05D002552 ORTHO05D002700 5.6e-09 65.9 156 31.4
BraA06t25040Z Brassica rapa HOM05D002552 ORTHO05D002700 5.6e-09 65.9 156 31.4
Glyma.05G032700 Glycine max HOM05D002552 ORTHO05D002700 5.6e-09 65.9 184 35.3
HanXRQChr05g0151501 Helianthus annuus HOM05D002552 ORTHO05D002700 5.6e-09 65.9 177 31.1
Lalb_Chr07g0182481 Lupinus albus HOM05D002552 ORTHO05D002700 7.3e-09 65.5 178 38.2
Nitab4.5_0003694g0030 Nicotiana tabacum HOM05D002552 ORTHO05D002700 7.3e-09 65.5 182 36.3
PGR083G0864 Punica granatum HOM05D002552 ORTHO05D002700 7.3e-09 65.5 174 39.1
Peaxi162Scf00017g02226 Petunia axillaris HOM05D002552 ORTHO05D002700 9.6e-09 65.1 183 35.5
Solyc06g071270.3 Solanum lycopersicum HOM05D002552 ORTHO05D002700 9.6e-09 65.1 94 37.2
SGA_v2.0_scaffold114G31857 Striga asiatica HOM05D002552 ORTHO05D002700 9.6e-09 65.1 191 38.2
ClCG06G016630 Citrullus lanatus HOM05D002552 ORTHO05D002700 1.2e-08 64.7 87 39.1
Cc04_g16210 Coffea canephora HOM05D002552 ORTHO05D002700 1.2e-08 64.7 189 38.1
DCAR_016521 Daucus carota HOM05D002552 ORTHO05D002700 1.2e-08 64.7 190 33.7
FAN04G3183 Fragaria x ananassa HOM05D002552 ORTHO05D002700 1.2e-08 64.7 88 38.6
Lj9A455T56 Lonicera japonica HOM05D002552 ORTHO05D002700 1.2e-08 64.7 173 38.2
HanXRQChr11g0327401 Helianthus annuus HOM05D002552 ORTHO05D002700 1.6e-08 64.3 153 35.9
SalBow3G0953 Salvia bowleyana HOM05D002552 ORTHO05D002700 1.6e-08 64.3 187 34.2
Sc04g0002200 Simmondsia chinensis HOM05D002552 ORTHO05D002700 1.6e-08 64.3 194 39.2
Sopen06g027570 Solanum pennellii HOM05D002552 ORTHO05D002700 1.6e-08 64.3 94 36.2
MD14G1188800 Malus domestica HOM05D002552 ORTHO05D002700 2.1e-08 63.9 88 36.4
DCAR_011185 Daucus carota HOM05D002552 ORTHO05D002700 2.8e-08 63.5 135 36.3
Peaxi162Scf00496g00014 Petunia axillaris HOM05D002552 ORTHO05D002700 2.8e-08 63.5 185 35.7
Phvul.004G022800 Phaseolus vulgaris HOM05D002552 ORTHO05D002700 2.8e-08 63.5 171 34.5
Haze_07423 Corylus avellana HOM05D002552 ORTHO05D002700 3.6e-08 63.2 178 36.5
arahy.Tifrunner.gnm1.ann1.5IN4WP Arachis hypogaea HOM05D002552 ORTHO05D002700 4.7e-08 62.8 174 34.5
EL10Ac5g10856 Beta vulgaris HOM05D002552 ORTHO05D002700 4.7e-08 62.8 96 42.7
BcaB01g00847 Brassica carinata HOM05D002552 ORTHO05D002700 4.7e-08 62.8 183 33.3
BcaC07g39290 Brassica carinata HOM05D002552 ORTHO05D002700 4.7e-08 62.8 161 28.6
CSS0007260 Camellia sinensis var. sinensis HOM05D002552 ORTHO05D002700 4.7e-08 62.8 171 35.1
Nitab4.5_0000642g0290 Nicotiana tabacum HOM05D002552 ORTHO05D002700 4.7e-08 62.8 182 35.7
Sed0002761 Sechium edule HOM05D002552 ORTHO05D002700 4.7e-08 62.8 160 38.8
HPP92_011648 Vanilla planifolia HOM05D002552 ORTHO05D002700 4.7e-08 62.8 235 31.5
Cfa019053 Carpinus fangiana HOM05D002552 ORTHO05D002700 6.2e-08 62.4 177 38.4
MD06G1182900 Malus domestica HOM05D002552 ORTHO05D002700 8.1e-08 62.0 88 36.4
PGSC0003DMG400011831 Solanum tuberosum HOM05D002552 ORTHO05D002700 8.1e-08 62.0 132 34.8
TPR.G38445 Trifolium pratense HOM05D002552 ORTHO05D002700 8.1e-08 62.0 195 32.8
TWI15G0643 Tripterygium wilfordii HOM05D002552 ORTHO05D002700 8.1e-08 62.0 184 36.4
vmacro19348 Vaccinium macrocarpon HOM05D002552 ORTHO05D002700 8.1e-08 62.0 172 37.8
Actinidia34966 Actinidia chinensis HOM05D002552 ORTHO05D002700 1.1e-07 61.6 171 35.1
arahy.Tifrunner.gnm1.ann1.J9IJ0F Arachis hypogaea HOM05D002552 ORTHO05D002700 1.1e-07 61.6 167 32.9
EL10Ac2g04645 Beta vulgaris HOM05D002552 ORTHO05D002700 1.1e-07 61.6 106 35.8
Oeu022180.1 Olea europaea HOM05D002552 ORTHO05D002700 1.1e-07 61.6 148 38.5
Phvul.003G196200 Phaseolus vulgaris HOM05D002552 ORTHO05D002700 1.1e-07 61.6 190 34.7
BcaC01g02536 Brassica carinata HOM05D002552 ORTHO05D002700 1.4e-07 61.2 179 32.4
C03p63810 Brassica napus HOM05D002552 ORTHO05D002700 1.4e-07 61.2 179 32.4
Gorai.006G187300 Gossypium raimondii HOM05D002552 ORTHO05D002700 1.4e-07 61.2 191 36.6
Potri.015G069400 Populus trichocarpa HOM05D002552 ORTHO05D002700 1.4e-07 61.2 160 38.8
BolC3t18637H Brassica oleracea HOM05D002552 ORTHO05D002700 1.8e-07 60.8 180 32.2
BcaB05g22905 Brassica carinata HOM05D002552 ORTHO05D002700 2.4e-07 60.5 175 33.1
A06p29650 Brassica napus HOM05D002552 ORTHO05D002700 2.4e-07 60.5 177 31.6
BolC8t49934H Brassica oleracea HOM05D002552 ORTHO05D002700 2.4e-07 60.5 161 28.0
Gohir.A09G169900 Gossypium hirsutum HOM05D002552 ORTHO05D002700 2.4e-07 60.5 191 36.1
Gohir.D09G165500 Gossypium hirsutum HOM05D002552 ORTHO05D002700 2.4e-07 60.5 191 36.6
RcHm_v2.0_Chr7g0179881 Rosa chinensis HOM05D002552 ORTHO05D002700 2.4e-07 60.5 113 33.6
BcaB02g09703 Brassica carinata HOM05D002552 ORTHO05D002700 3.1e-07 60.1 158 32.3
CsaV3_1G001880 Cucumis sativus L. HOM05D002552 ORTHO05D002700 3.1e-07 60.1 158 36.7
Sopen03g032750 Solanum pennellii HOM05D002552 ORTHO05D002700 3.1e-07 60.1 183 35.5
Cc00_g04070 Coffea canephora HOM05D002552 ORTHO05D002700 4.0e-07 59.7 173 37.0
Duzib205G1906 Durio zibethinus HOM05D002552 ORTHO05D002700 4.0e-07 59.7 102 37.3
FvH4_5g16220 Fragaria vesca HOM05D002552 ORTHO05D002700 4.0e-07 59.7 88 38.6
Solyc03g113700.3 Solanum lycopersicum HOM05D002552 ORTHO05D002700 4.0e-07 59.7 183 35.5
FAN18G2664 Fragaria x ananassa HOM05D002552 ORTHO05D002700 5.2e-07 59.3 88 38.6
Nitab4.5_0004139g0010 Nicotiana tabacum HOM05D002552 ORTHO05D002700 5.2e-07 59.3 184 34.8
Lj4g0009456 Lotus japonicus HOM05D002552 ORTHO05D002700 6.8e-07 58.9 188 34.6
Nitab4.5_0002101g0070 Nicotiana tabacum HOM05D002552 ORTHO05D002700 8.9e-07 58.5 95 35.8
Nitab4.5_0000026g0330 Nicotiana tabacum HOM05D002552 ORTHO05D002700 1.2e-06 58.2 184 36.4
Sc11g0008000 Simmondsia chinensis HOM05D002552 ORTHO05D002700 1.2e-06 58.2 153 35.9
CDE02G3201 Ceratophyllum demersum HOM05D002552 ORTHO05D002700 2.0e-06 57.4 180 34.4
Glyma.17G094000 Glycine max HOM05D002552 ORTHO05D002700 2.0e-06 57.4 190 33.2
PGSC0003DMG400024467 Solanum tuberosum HOM05D002552 ORTHO05D002700 2.0e-06 57.4 183 34.4
MELO3C017131.2 Cucumis melo HOM05D002552 ORTHO05D002700 2.6e-06 57.0 158 36.1
Oeu005684.2 Olea europaea HOM05D002552 ORTHO05D002700 2.6e-06 57.0 128 36.7
Sabra12G0053000 Salix brachista HOM05D002552 ORTHO05D002700 2.6e-06 57.0 200 35.0
BraA06t25913Z Brassica rapa HOM05D002552 ORTHO05D002700 3.4e-06 56.6 173 31.2
ECA232G1015 Erigeron canadensis HOM05D002552 ORTHO05D002700 5.8e-06 55.8 87 34.5
unitig_744.g24395 Utricularia gibba HOM05D002552 ORTHO05D002700 5.8e-06 55.8 167 31.1
Medtr4g107090 Medicago truncatula HOM05D002552 ORTHO05D002700 7.6e-06 55.5 193 36.3
Sp2g26050 Schrenkiella parvula HOM05D002552 ORTHO05D002700 7.6e-06 55.5 187 32.1
SGA_v2.0_scaffold7G04106 Striga asiatica HOM05D002552 ORTHO05D002700 9.9e-06 55.1 91 38.5


User provided reference genes

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