Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 3.4e-192 674.9 344 100.0
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 2.3e-172 609.0 344 90.1
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 5.0e-172 607.8 341 91.5
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.6e-170 602.8 344 89.5
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 3.6e-170 601.7 344 89.5
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 8.6e-164 580.5 340 86.8
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 3.6e-162 575.1 340 86.8
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 6.2e-162 574.3 340 86.5
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 2.1e-154 549.3 344 82.0
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 1.3e-143 513.5 344 78.8
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 1.4e-142 510.0 336 79.8
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 1.4e-142 510.0 346 77.7
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 3.2e-142 508.8 344 78.8
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 1.2e-141 506.9 343 78.1
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.6e-141 506.5 343 76.7
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 2.7e-141 505.8 331 79.2
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 7.9e-141 504.2 335 78.5
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 1.0e-140 503.8 344 77.6
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 1.3e-140 503.4 345 77.7
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 5.1e-140 501.5 343 77.6
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 1.5e-139 500.0 344 75.3
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 2.5e-139 499.2 296 84.1
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 7.3e-139 497.7 343 76.4
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 9.6e-139 497.3 324 78.1
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 9.6e-139 497.3 343 74.6
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 1.6e-138 496.5 304 80.6
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 2.8e-138 495.7 344 74.7
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 2.8e-138 495.7 345 75.4
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 2.8e-138 495.7 339 75.2
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 4.8e-138 495.0 304 80.3
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 4.8e-138 495.0 344 76.5
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 8.1e-138 494.2 304 80.3
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 8.1e-138 494.2 304 80.3
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 8.1e-138 494.2 302 82.5
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 8.1e-138 494.2 296 83.4
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 1.1e-137 493.8 303 80.9
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 1.1e-137 493.8 304 80.3
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 1.4e-137 493.4 284 86.6
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 1.4e-137 493.4 284 86.6
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 2.4e-137 492.7 284 85.9
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 3.1e-137 492.3 341 73.3
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 4.0e-137 491.9 343 75.2
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 5.3e-137 491.5 303 80.9
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 6.9e-137 491.1 347 72.9
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 6.9e-137 491.1 337 75.4
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 6.9e-137 491.1 324 78.1
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 2.0e-136 489.6 339 74.6
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 2.0e-136 489.6 309 80.9
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 2.6e-136 489.2 337 76.3
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 2.6e-136 489.2 322 77.3
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 4.5e-136 488.4 345 75.7
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 5.8e-136 488.0 324 76.9
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 7.6e-136 487.6 318 78.6
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 9.9e-136 487.3 288 83.7
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 9.9e-136 487.3 334 75.7
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 1.7e-135 486.5 338 75.7
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 1.7e-135 486.5 303 80.5
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 2.9e-135 485.7 310 78.7
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 4.9e-135 485.0 342 74.3
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 6.4e-135 484.6 318 77.7
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 1.1e-134 483.8 342 73.7
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 1.4e-134 483.4 306 79.7
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 2.4e-134 482.6 344 72.7
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 4.2e-134 481.9 347 72.3
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 5.4e-134 481.5 349 73.4
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 7.1e-134 481.1 303 78.5
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 9.3e-134 480.7 299 79.3
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 1.2e-133 480.3 296 80.4
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 2.1e-133 479.6 351 70.7
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.1e-133 479.6 344 72.7
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 4.6e-133 478.4 301 78.4
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 6.0e-133 478.0 315 77.1
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 7.9e-133 477.6 327 74.6
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 7.9e-133 477.6 304 77.0
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 1.0e-132 477.2 329 78.1
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 2.3e-132 476.1 362 72.4
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 8.7e-132 474.2 275 86.5
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 3.3e-131 472.2 329 75.4
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 7.4e-131 471.1 272 84.6
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 1.6e-130 469.9 349 70.5
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 1.1e-129 467.2 271 84.5
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 4.0e-129 465.3 294 77.9
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 1.2e-128 463.8 293 80.5
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 1.0e-124 450.7 280 77.5
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 3.3e-123 445.7 338 67.8
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 7.4e-123 444.5 335 68.4
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 6.2e-122 441.4 338 71.0
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 1.1e-121 440.7 270 78.1
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 3.1e-121 439.1 263 83.7
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 4.1e-121 438.7 336 69.6
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 2.9e-119 432.6 274 76.6
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 2.5e-118 429.5 272 75.7
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 4.6e-117 425.2 328 67.4
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 1.5e-112 410.2 237 87.8
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 6.5e-111 404.8 274 76.6
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 4.2e-110 402.1 235 86.4
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 2.7e-109 399.4 344 64.5
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 1.5e-107 393.7 225 88.0
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.4e-105 387.1 242 76.9
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 3.8e-103 379.0 235 77.9
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 3.9e-100 369.0 244 78.3
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 4.5e-96 355.5 263 64.3
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 7.7e-96 354.8 254 76.4
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 1.7e-95 353.6 269 63.9
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 5.5e-94 348.6 255 72.5
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 1.0e-92 344.4 255 70.2
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 1.4e-92 344.0 204 78.4
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.1e-91 340.9 263 70.3
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 1.7e-90 337.0 215 78.6
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.2e-83 314.3 319 58.0
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 6.1e-77 292.0 264 53.4
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 3.7e-74 282.7 159 84.9
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 8.9e-68 261.5 217 62.7
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 3.9e-63 246.1 212 59.9
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 7.0e-57 225.3 160 73.1
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 3.4e-51 206.5 349 39.8
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 9.8e-51 204.9 175 60.6
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 4.9e-50 202.6 116 81.9
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 1.1e-49 201.4 118 84.7
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 2.1e-48 197.2 312 40.4
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 1.7e-47 194.1 116 80.2
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 9.5e-46 188.3 127 72.4
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 3.6e-45 186.4 227 47.6
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 2.0e-35 154.1 347 35.2
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 4.4e-35 152.9 237 41.8
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.4e-33 147.1 77 90.9
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 1.8e-28 131.0 297 30.0
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 1.5e-27 127.9 71 83.1
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 4.5e-27 126.3 76 80.3
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 9.9e-27 125.2 79 73.4
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 9.3e-25 118.6 303 29.4
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 8.7e-23 112.1 120 56.7
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.1e-20 105.1 110 51.8
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 1.4e-17 94.7 81 61.7
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 9.3e-17 92.0 77 62.3
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 4.5e-11 73.2 47 76.6
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 1.1e-09 68.6 187 33.2
BolC2t11443H Brassica oleracea HOM05D005629 ORTHO05D008000 7.1e-09 65.9 53 66.0
FvH4_6g53451 Fragaria vesca HOM05D005629 ORTHO05D196308 1.0e-07 62.0 78 46.2
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 1.8e-07 61.2 59 59.3
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 1.1e-06 58.5 36 75.0


User provided reference genes

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