Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 1.6e-244 849.0 412 100.0
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 1.1e-221 773.1 421 89.5
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 3.2e-221 771.5 421 89.3
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 4.6e-212 741.1 421 86.7
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 1.1e-210 736.5 421 86.2
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 1.5e-210 736.1 421 86.2
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 8.1e-177 624.0 414 73.2
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 2.1e-172 609.4 416 72.4
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 3.5e-172 608.6 416 72.4
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 8.7e-171 604.0 424 69.6
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 2.1e-169 599.4 422 69.9
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 8.2e-169 597.4 421 70.1
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 2.2e-166 589.3 425 68.7
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 3.9e-163 578.6 420 67.4
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 1.6e-161 573.2 421 67.2
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.4e-160 570.1 423 66.7
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 2.4e-160 569.3 420 66.2
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.4e-160 569.3 420 66.0
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 3.1e-160 568.9 424 66.3
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 4.1e-160 568.5 420 66.4
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 6.9e-160 567.8 424 67.5
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.5e-159 566.6 420 65.7
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.0e-159 566.2 420 65.7
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 2.0e-159 566.2 429 66.4
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 2.6e-159 565.8 422 66.1
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.4e-159 565.5 419 65.6
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 7.7e-159 564.3 420 65.7
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 1.3e-158 563.5 420 66.7
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 3.8e-158 562.0 420 65.5
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 5.0e-158 561.6 422 65.4
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 1.4e-157 560.1 422 64.5
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 1.2e-156 557.0 420 63.8
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 1.6e-156 556.6 421 66.5
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 1.0e-155 553.9 418 64.6
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 3.9e-155 552.0 420 63.3
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 8.8e-155 550.8 421 63.4
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 2.5e-154 549.3 421 64.4
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 4.3e-154 548.5 421 63.7
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 4.3e-154 548.5 421 63.7
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 9.7e-154 547.4 421 65.6
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 2.8e-153 545.8 422 63.3
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 2.8e-153 545.8 449 61.5
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 8.2e-153 544.3 415 61.9
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 8.2e-153 544.3 521 54.7
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 1.8e-152 543.1 417 63.5
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 2.4e-152 542.7 423 62.6
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 3.1e-152 542.3 418 65.3
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 1.5e-151 540.0 417 64.0
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 2.0e-151 539.7 421 62.0
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 5.9e-151 538.1 426 62.7
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 1.0e-150 537.3 421 62.0
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 1.3e-150 537.0 415 62.2
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 1.3e-150 537.0 420 62.6
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 2.9e-150 535.8 422 62.8
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 3.8e-150 535.4 418 64.1
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 1.9e-149 533.1 422 61.4
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 1.9e-149 533.1 419 63.0
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 4.2e-149 531.9 414 64.3
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 1.2e-148 530.4 421 62.2
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 2.7e-148 529.3 421 63.4
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 1.0e-147 527.3 395 65.6
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 6.7e-147 524.6 407 63.9
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 3.1e-144 515.8 418 60.3
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 4.5e-143 511.9 416 61.3
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 5.9e-143 511.5 415 61.7
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 1.3e-142 510.4 420 59.3
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 1.7e-142 510.0 392 62.8
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 6.5e-142 508.1 497 52.5
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.5e-141 506.9 416 59.4
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 3.2e-141 505.8 417 59.7
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 7.2e-141 504.6 417 58.5
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 9.4e-141 504.2 415 61.4
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.2e-140 503.8 416 59.1
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 6.1e-140 501.5 413 60.0
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 1.0e-139 500.7 415 58.8
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.0e-139 500.7 421 59.4
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 2.3e-139 499.6 387 63.3
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 2.0e-138 496.5 424 58.7
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 2.6e-138 496.1 471 54.6
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 4.4e-138 495.4 423 58.6
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 1.3e-137 493.8 421 56.8
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 2.8e-137 492.7 525 49.7
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 6.3e-137 491.5 424 58.5
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 8.2e-137 491.1 419 57.3
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 1.1e-136 490.7 421 56.5
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 2.4e-136 489.6 420 58.6
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 2.4e-136 489.6 433 57.0
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 1.6e-135 486.9 407 58.7
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 2.0e-135 486.5 424 57.1
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 7.7e-135 484.6 421 54.9
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 1.3e-134 483.8 393 60.3
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 2.2e-134 483.0 428 57.5
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 2.9e-134 482.6 420 56.7
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 5.0e-134 481.9 421 57.0
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 1.1e-133 480.7 414 56.5
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 1.5e-133 480.3 450 52.9
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 8.0e-132 474.6 415 55.9
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 2.3e-131 473.0 417 56.6
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 3.0e-131 472.6 420 55.2
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 5.2e-131 471.9 449 52.6
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 8.8e-131 471.1 461 53.6
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 8.8e-131 471.1 414 55.8
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 8.8e-131 471.1 414 55.8
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 4.4e-130 468.8 419 55.6
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 1.3e-129 467.2 412 54.9
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 1.4e-128 463.8 455 51.4
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 1.2e-127 460.7 370 61.9
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 7.7e-127 458.0 407 56.5
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 5.0e-118 428.7 341 62.5
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 5.0e-118 428.7 341 62.5
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 7.5e-106 388.3 440 46.6
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 2.0e-103 380.2 439 45.6
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 4.6e-103 379.0 412 46.8
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 7.3e-101 371.7 412 45.4
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 8.1e-100 368.2 294 60.5
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 7.8e-95 351.7 270 61.5
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 3.7e-89 332.8 271 60.1
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 2.7e-87 326.6 421 44.9
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 3.2e-80 303.1 421 42.0
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 4.2e-80 302.8 165 78.2
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 4.3e-77 292.7 430 38.1
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 8.4e-73 278.5 141 83.7
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.3e-70 271.2 149 77.9
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 6.6e-70 268.9 546 32.2
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.6e-63 247.7 139 76.3
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 4.1e-51 206.5 121 70.2
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 3.0e-46 190.3 91 84.6
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 4.6e-39 166.4 225 44.4
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 2.3e-38 164.1 81 95.1
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 8.8e-38 162.2 199 43.2
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.0e-25 122.1 73 75.3
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.0e-25 122.1 73 75.3
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 2.9e-25 120.6 66 78.8
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 5.7e-21 106.3 59 72.9
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 1.4e-19 101.7 138 41.3
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 1.7e-17 94.7 66 65.2
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 1.0e-14 85.5 177 32.2
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 2.6e-13 80.9 73 56.2
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 9.8e-13 79.0 61 63.9
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 9.1e-11 72.4 74 51.4


User provided reference genes

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