Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 1.5e-121 439.9 288 100.0
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 5.3e-98 361.7 290 86.6
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 8.4e-96 354.4 291 81.4
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 4.6e-94 348.6 291 83.2
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 8.7e-77 291.2 288 73.6
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 1.1e-71 274.2 290 72.1
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 1.9e-71 273.5 289 70.9
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 1.4e-69 267.3 289 72.3
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 6.7e-69 265.0 288 70.1
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 5.7e-68 261.9 325 52.9
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 9.7e-68 261.2 290 70.7
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 2.2e-67 260.0 292 66.8
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 2.2e-67 260.0 215 80.9
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 8.2e-67 258.1 288 70.1
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 9.1e-66 254.6 288 68.8
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 9.1e-66 254.6 288 68.8
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 3.4e-65 252.7 193 90.2
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 6.5e-64 248.4 288 68.4
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 1.1e-63 247.7 294 68.0
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 1.4e-63 247.3 297 69.4
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 2.5e-63 246.5 294 68.0
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 2.5e-63 246.5 291 67.4
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 3.2e-63 246.1 289 69.6
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 4.2e-63 245.7 292 66.8
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 7.2e-63 245.0 288 65.6
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 9.4e-63 244.6 372 50.0
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 9.4e-63 244.6 288 69.8
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.6e-62 243.8 294 68.0
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.6e-62 243.8 294 68.0
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 1.6e-62 243.8 215 79.1
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 1.0e-61 241.1 287 67.2
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 1.0e-61 241.1 288 64.9
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 1.4e-61 240.7 288 66.3
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 1.4e-61 240.7 288 67.4
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 2.3e-61 240.0 289 66.8
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 3.0e-61 239.6 217 81.6
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 3.0e-61 239.6 217 81.6
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 3.0e-61 239.6 290 68.3
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 3.9e-61 239.2 292 65.8
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 5.2e-61 238.8 288 65.6
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 1.5e-60 237.3 288 64.6
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 2.6e-60 236.5 289 67.1
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 4.4e-60 235.7 292 67.1
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 7.4e-60 235.0 291 68.4
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 7.4e-60 235.0 291 65.6
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 1.7e-59 233.8 292 68.5
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 2.2e-59 233.4 282 55.0
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 8.2e-59 231.5 288 68.4
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 1.1e-58 231.1 290 67.2
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 1.8e-58 230.3 291 67.7
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 2.4e-58 229.9 293 64.2
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 2.4e-58 229.9 215 79.5
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 2.4e-58 229.9 291 65.6
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 3.1e-58 229.6 290 66.9
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 4.1e-58 229.2 292 65.1
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 5.3e-58 228.8 215 81.9
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 9.1e-58 228.0 229 68.6
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 9.1e-58 228.0 290 65.2
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 1.2e-57 227.6 300 54.3
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 2.0e-57 226.9 292 67.5
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 2.0e-57 226.9 292 64.0
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 3.5e-57 226.1 296 61.8
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 4.5e-57 225.7 291 64.6
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 7.7e-57 224.9 290 64.1
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 1.0e-56 224.6 217 78.8
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 1.0e-56 224.6 219 79.0
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 1.7e-56 223.8 290 63.1
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 3.8e-56 222.6 291 64.6
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 3.8e-56 222.6 217 79.3
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 3.8e-56 222.6 292 64.7
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 6.5e-56 221.9 279 67.7
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 6.5e-56 221.9 291 64.6
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 6.5e-56 221.9 196 84.2
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 8.5e-56 221.5 245 69.8
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 1.1e-55 221.1 291 64.6
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 1.1e-55 221.1 291 63.6
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 9.4e-55 218.0 292 63.0
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 9.4e-55 218.0 231 68.8
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 1.6e-54 217.2 321 61.7
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 3.6e-54 216.1 271 54.2
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 3.0e-53 213.0 218 76.6
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 3.0e-53 213.0 301 59.1
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 6.7e-53 211.8 215 70.7
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 1.5e-52 210.7 232 73.3
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 3.3e-52 209.5 196 80.6
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 7.0e-50 201.8 182 80.2
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 5.9e-49 198.7 219 64.4
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 3.8e-48 196.1 234 54.3
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 6.8e-45 185.3 256 48.8
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 4.4e-44 182.6 279 58.4
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 6.5e-40 168.7 84 96.4
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.1e-39 167.9 156 81.4
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 1.4e-37 161.0 132 87.1
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 6.8e-37 158.7 134 78.4
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 6.8e-37 158.7 134 78.4
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 1.3e-35 154.5 82 85.4
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 2.2e-35 153.7 191 58.6
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 2.8e-35 153.3 134 85.1
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 4.9e-35 152.5 84 86.9
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 1.1e-31 141.4 193 66.8
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 1.8e-29 134.0 224 63.8
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 5.2e-29 132.5 143 64.3
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 5.2e-29 132.5 165 52.1
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 2.4e-26 123.6 165 57.6
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 3.5e-25 119.8 74 86.5
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 2.5e-23 113.6 166 75.3
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 8.0e-22 108.6 87 63.2
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 9.8e-20 101.7 185 53.5
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.9e-18 97.4 70 68.6
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 1.2e-17 94.7 94 58.5
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 1.1e-10 71.6 44 75.0
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 4.3e-07 59.7 54 57.4
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 1.2e-06 58.2 84 46.4


User provided reference genes

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