Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G204500 Theobroma cacao HOM05D008044 ORTHO05D010106 3.8e-93 344.7 166 100.0
Duzib205G1586 Durio zibethinus HOM05D008044 ORTHO05D010106 6.0e-70 267.7 166 80.7
Gorai.003G122500 Gossypium raimondii HOM05D008044 ORTHO05D010106 2.5e-68 262.3 164 75.6
Gohir.D03G116200 Gossypium hirsutum HOM05D008044 ORTHO05D010106 3.3e-68 261.9 164 75.6
Gohir.A03G051500 Gossypium hirsutum HOM05D008044 ORTHO05D010106 9.5e-68 260.4 164 75.0
Sabra15G0006200 Salix brachista HOM05D002361 ORTHO05D002843 2.4e-63 245.7 163 70.6
GSVIVG01038604001 Vitis vinifera HOM05D008044 ORTHO05D010106 1.6e-62 243.0 165 71.5
Manes.01G037300 Manihot esculenta HOM05D008044 ORTHO05D010106 4.6e-62 241.5 164 71.3
Dinv29244 Davidia involucrata HOM05D008044 ORTHO05D010106 5.6e-60 234.6 164 66.5
Dinv35361 Davidia involucrata HOM05D008044 ORTHO05D010106 9.6e-60 233.8 165 68.5
Medtr3g092020 Medicago truncatula HOM05D008044 ORTHO05D010106 9.6e-60 233.8 164 65.9
Psat5g074880 Pisum sativum HOM05D008044 ORTHO05D010106 2.8e-59 232.3 164 66.5
CSS0007407 Camellia sinensis var. sinensis HOM05D008044 ORTHO05D010106 3.6e-59 231.9 163 69.9
CiPaw.06G043900 Carya illinoinensis HOM05D008044 ORTHO05D010106 6.2e-59 231.1 164 68.9
DCAR_020347 Daucus carota HOM05D008044 ORTHO05D010106 2.4e-58 229.2 164 66.5
MELO3C019381.2 Cucumis melo HOM05D008044 ORTHO05D010106 5.2e-58 228.0 165 66.7
CsaV3_3G019660 Cucumis sativus L. HOM05D008044 ORTHO05D010106 1.2e-57 226.9 165 66.1
TPR.G33642 Trifolium pratense HOM05D008044 ORTHO05D010106 1.5e-57 226.5 167 65.3
arahy.Tifrunner.gnm1.ann1.QU8WMY Arachis hypogaea HOM05D008044 ORTHO05D010106 3.4e-57 225.3 168 67.9
TAR636G0016 Trochodendron aralioides HOM05D008044 ORTHO05D010106 9.9e-57 223.8 164 67.7
PSO063G1947 Papaver somniferum HOM05D008044 ORTHO05D010106 2.2e-56 222.6 164 64.0
Glyma.04G232600 Glycine max HOM05D008044 ORTHO05D010106 3.8e-56 221.9 167 63.5
arahy.Tifrunner.gnm1.ann1.4AVA7A Arachis hypogaea HOM05D008044 ORTHO05D010106 4.9e-56 221.5 168 66.7
Ciclev10022664m.g Citrus clementina HOM05D008044 ORTHO05D010106 1.4e-55 219.9 164 67.7
Eucgr.A01433 Eucalyptus grandis HOM05D008044 ORTHO05D010106 1.4e-55 219.9 166 66.9
Atru.chr12.2313 Acer truncatum HOM05D008044 ORTHO05D010106 1.9e-55 219.5 167 65.9
Glyma.06G132400 Glycine max HOM05D008044 ORTHO05D010106 1.9e-55 219.5 167 62.9
Sed0010771 Sechium edule HOM05D008044 ORTHO05D010106 2.4e-55 219.2 165 63.0
AUR62035573 Chenopodium quinoa HOM05D008044 ORTHO05D010106 3.2e-55 218.8 164 62.8
Lsat_1_v5_gn_2_135221 Lactuca sativa HOM05D008044 ORTHO05D010106 3.2e-55 218.8 164 62.2
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 5.4e-55 218.0 165 66.1
Lalb_Chr23g0271711 Lupinus albus HOM05D008044 ORTHO05D010106 5.4e-55 218.0 164 64.6
QL09p007646 Quercus lobata HOM05D008044 ORTHO05D010106 5.4e-55 218.0 196 59.2
Nitab4.5_0008197g0010 Nicotiana tabacum HOM05D008044 ORTHO05D010106 1.2e-54 216.9 165 63.0
Aqoxy5G02418 Aquilegia oxysepala HOM05D008044 ORTHO05D010106 1.6e-54 216.5 164 67.1
MSTRG.8632 Avicennia marina HOM05D008044 ORTHO05D010106 1.6e-54 216.5 164 64.0
Phvul.009G048200 Phaseolus vulgaris HOM05D008044 ORTHO05D010106 2.7e-54 215.7 162 63.6
AUR62006056 Chenopodium quinoa HOM05D008044 ORTHO05D010106 4.6e-54 214.9 164 61.6
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 2.3e-53 212.6 150 73.3
Lj1g0025539 Lotus japonicus HOM05D008044 ORTHO05D010106 3.0e-53 212.2 168 61.3
Migut.F00176 Erythranthe guttata HOM05D008044 ORTHO05D010106 3.3e-52 208.8 164 61.6
HanXRQChr04g0100441 Helianthus annuus HOM05D008044 ORTHO05D010106 4.3e-52 208.4 167 62.3
PGSC0003DMG400018537 Solanum tuberosum HOM05D008044 ORTHO05D010106 9.6e-52 207.2 164 61.6
Cfa016194 Carpinus fangiana HOM05D008044 ORTHO05D010106 1.3e-51 206.8 164 64.0
SGA_v2.0_scaffold44G16829 Striga asiatica HOM05D008044 ORTHO05D010106 4.8e-51 204.9 164 61.6
Solyc03g082670.3 Solanum lycopersicum HOM05D008044 ORTHO05D010106 8.1e-51 204.1 164 61.6
Hund11636 Selenicereus undatus HOM05D008044 ORTHO05D010106 5.3e-50 201.4 168 56.5
CAN.G481.61 Capsicum annuum HOM05D008044 ORTHO05D010106 1.5e-49 199.9 164 59.1
CANSAT21G1192 Cannabis sativa HOM05D008044 ORTHO05D010106 1.3e-48 196.8 164 61.0
Sc25g0000980 Simmondsia chinensis HOM05D008044 ORTHO05D010106 4.9e-48 194.9 167 56.9
ATR0620G028 Amborella trichopoda HOM05D008044 ORTHO05D010106 8.4e-48 194.1 165 61.2
PGR042G2636 Punica granatum HOM05D008044 ORTHO05D010106 1.9e-47 193.0 167 60.5
CiPaw.05G200900 Carya illinoinensis HOM05D008044 ORTHO05D010106 2.4e-47 192.6 164 61.0
Actinidia08675 Actinidia chinensis HOM05D008044 ORTHO05D010106 7.8e-46 187.6 134 68.7
SGA_v2.0_scaffold18G08440 Striga asiatica HOM05D008044 ORTHO05D010106 7.8e-46 187.6 165 54.5
MBI04_g11918_MAGBIO Magnolia biondii HOM05D008044 ORTHO05D010106 3.9e-45 185.3 188 52.1
PSO782G0454 Papaver somniferum HOM05D008044 ORTHO05D010106 3.9e-45 185.3 116 73.3
Haze_00261 Corylus avellana HOM05D008044 ORTHO05D010106 1.5e-44 183.3 136 66.9
ClCG05G009120 Citrullus lanatus HOM05D008044 ORTHO05D010106 1.9e-44 183.0 137 63.5
SalBow4G0010 Salvia bowleyana HOM05D008044 ORTHO05D010106 1.9e-44 183.0 168 56.0
EL10Ac3g05235 Beta vulgaris HOM05D008044 ORTHO05D010106 1.6e-43 179.9 139 61.9
Zm00001eb187590 Zea mays HOM05D008044 ORTHO05D010106 2.1e-43 179.5 160 55.6
SEGI_00721 Sequoiadendron giganteum HOM05D008044 ORTHO05D010106 5.3e-42 174.9 177 50.3
Oeu037043.1 Olea europaea HOM05D001626 ORTHO05D010106 9.0e-42 174.1 158 55.1
Nitab4.5_0010367g0020 Nicotiana tabacum HOM05D008044 ORTHO05D010106 1.2e-41 173.7 140 59.3
Ca_16735_v3 Cicer arietinum L. HOM05D008044 ORTHO05D010106 3.8e-40 168.7 134 64.2
Hma1.2p1_0512F.1_g169310 Hydrangea macrophylla HOM05D008044 ORTHO05D010106 9.3e-39 164.1 131 60.3
Ah.07g205140 Amaranthus hybridus HOM05D008044 ORTHO05D010106 4.6e-38 161.8 164 50.0
Sopen03g022430 Solanum pennellii HOM05D008044 ORTHO05D010106 2.5e-36 156.0 132 60.6
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 3.3e-36 155.6 134 62.7
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 1.2e-33 147.1 164 47.6
CDE02G3408 Ceratophyllum demersum HOM05D008044 ORTHO05D010106 5.1e-29 131.7 116 52.6
Zm00001eb421680 Zea mays HOM05D001260 ORTHO05D010106 5.1e-29 131.7 96 58.3
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 8.2e-27 124.4 82 65.9
AagrBONN_evm.TU.Sc2ySwM_117.1515 Anthoceros agrestis HOM05D008044 ORTHO05D010106 1.0e-24 117.5 188 33.0
Os02g0686500 Oryza sativa ssp. japonica HOM05D008044 ORTHO05D010106 6.5e-24 114.8 82 61.0
Mapoly0007s0051 Marchantia polymorpha HOM05D008044 ORTHO05D010106 8.4e-24 114.4 162 38.3
Lsat_1_v5_gn_9_14140 Lactuca sativa HOM05D008044 ORTHO05D010106 1.6e-22 110.2 150 45.3
Nn1g00365 Nelumbo nucifera HOM05D008044 ORTHO05D010106 1.6e-19 100.1 82 64.6
ECA238G1983 Erigeron canadensis HOM05D008044 ORTHO05D010106 3.7e-19 99.0 82 62.2
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 9.4e-07 57.8 141 27.7
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.6e-06 57.0 104 34.6
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.6e-06 57.0 104 33.7


User provided reference genes

Program Settings