Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 4755.7 2433 100.0
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 3940.2 2437 82.3
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 3936.0 2437 82.2
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 3897.4 2447 81.2
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 3515.7 2433 76.6
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 3347.8 2430 73.4
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 3226.0 2440 67.1
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 3144.0 2465 65.3
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 3139.7 2410 66.3
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 3134.7 2429 65.4
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 3129.3 2433 66.0
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 3124.7 2432 65.1
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 3122.0 2443 64.5
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 3097.8 2448 64.1
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 3069.6 2434 64.3
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 3063.1 2432 64.0
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 3057.3 2430 63.8
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 3050.8 2434 63.4
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 3044.2 2434 63.8
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 3043.1 2438 63.6
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 3025.7 2443 62.8
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2980.7 2432 61.5
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2958.3 2434 61.2
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 2935.2 2433 60.7
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2929.4 2479 61.0
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2927.5 2467 59.9
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2921.7 2467 59.8
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2920.2 2430 61.4
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2905.2 2467 59.5
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2904.0 2467 59.5
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2877.0 2105 68.5
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2869.7 2426 60.4
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2837.0 2376 60.4
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2785.7 2430 58.7
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2775.7 2423 58.9
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2760.7 2431 58.2
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2760.7 2400 58.1
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2758.4 2434 58.3
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2757.6 2445 57.8
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2756.1 2429 58.1
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2750.7 2435 57.6
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2745.7 2434 57.8
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2744.1 2440 57.0
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2737.2 2467 56.9
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2735.3 2423 57.6
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2732.2 2464 56.8
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2729.9 2471 56.9
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2728.4 2427 57.3
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2718.7 2435 58.8
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2694.1 2465 57.7
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2693.7 2440 56.7
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2688.7 2441 56.7
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2682.1 2438 57.3
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2674.0 2437 57.2
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2662.5 2437 56.1
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2647.5 2439 56.7
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2646.3 2451 56.5
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2636.7 2451 56.0
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2634.8 2439 56.4
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2627.4 2474 55.9
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2623.6 2393 56.4
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2618.6 2478 55.4
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2603.9 2436 55.9
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2596.6 2428 55.1
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2595.8 2444 56.7
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2594.3 2456 54.6
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2594.3 2446 55.4
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2589.3 2439 55.1
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2585.1 2438 54.5
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2578.5 2440 54.9
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2563.5 2442 53.8
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2562.7 2398 55.3
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2554.6 2439 54.1
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2553.1 2506 54.5
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2548.9 2435 54.3
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2544.6 2443 54.5
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2505.7 2438 52.9
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2491.8 2447 53.0
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2482.6 2439 52.6
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2475.3 2460 52.6
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2468.7 2447 52.7
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2459.5 2456 52.9
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2458.3 2448 51.9
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2409.0 2442 51.2
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2396.7 2441 51.6
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2390.5 2072 59.5
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2390.1 2072 59.5
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2305.4 1461 79.4
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2293.5 1461 79.0
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 2162.9 2260 50.4
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 2127.8 1841 58.5
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 2063.5 2410 46.3
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 2017.7 2413 46.5
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1873.6 2511 42.7
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1809.3 1379 66.4
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1784.2 1517 60.1
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1770.4 1656 56.5
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1748.4 2434 41.0
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1744.2 1098 79.9
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1480.7 1458 53.8
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1375.9 1382 52.7
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1321.6 1560 46.3
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1296.6 1422 50.3
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1208.0 1131 56.4
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 1149.8 1042 55.9
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1139.0 1048 55.7
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 1.7e-311 1073.9 1021 54.7
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 1.2e-288 998.0 1400 41.4
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 2.9e-266 923.7 2536 28.7
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 6.1e-264 916.0 926 51.1
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 1.6e-251 874.8 770 55.1
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 2.0e-246 857.8 2107 30.6
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 1.3e-234 818.5 854 51.2
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 2.3e-231 807.7 2160 29.2
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 2.0e-230 804.7 1495 35.3
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 1.5e-222 778.5 799 52.1
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 3.2e-188 664.5 2355 25.5
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 1.5e-182 645.6 578 54.0
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 1.0e-162 579.7 811 40.3
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 4.1e-127 461.5 324 67.0
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 2.3e-125 455.7 409 56.7
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.9e-124 452.6 476 51.5
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 3.4e-121 441.8 474 49.4
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 2.6e-97 362.5 222 79.7
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 6.4e-96 357.8 330 53.9
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 4.6e-94 351.7 337 55.5
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 5.1e-93 348.2 370 49.5
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 7.1e-79 301.2 337 47.5
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 5.1e-77 295.0 334 47.6
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 9.3e-71 274.2 482 35.9
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 2.7e-70 272.7 237 55.3
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 2.0e-65 256.5 442 37.6
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 4.1e-58 232.3 150 76.7
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.7e-54 219.5 349 41.3
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.6e-49 203.0 186 54.8
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 3.2e-47 196.1 122 77.9
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 1.6e-46 193.7 319 38.2
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 5.2e-45 188.7 147 62.6
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 4.1e-42 179.1 237 46.8
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 2.7e-41 176.4 193 53.4
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 2.7e-41 176.4 123 69.1
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 1.3e-40 174.1 248 40.3
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.9e-39 170.2 235 43.4
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 3.8e-32 146.0 325 33.8
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 5.5e-31 142.1 98 75.5
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.6e-28 133.3 291 32.3
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 8.3e-27 128.3 127 47.2
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 1.3e-24 120.9 75 78.7
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 3.8e-24 119.4 163 40.5
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 3.3e-23 116.3 77 70.1
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.6e-22 112.8 200 37.5
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 8.0e-22 111.7 373 25.2
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 8.0e-22 111.7 106 49.1
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 1.0e-21 111.3 140 41.4
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 1.6e-17 97.4 119 43.7
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 7.8e-17 95.1 76 56.6
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.0e-16 94.7 58 77.6
A02p40370 Brassica napus HOM05D004333 ORTHO05D005363 2.5e-15 90.1 97 44.3
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 9.5e-15 88.2 228 26.8
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 6.8e-13 82.0 108 42.6
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 2.0e-12 80.5 78 47.4
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 1.7e-11 77.4 128 37.5
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 8.3e-11 75.1 100 40.0
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 2.3e-08 67.0 56 55.4
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.6e-08 65.5 72 43.1
BcaC03g17980 Brassica carinata HOM05D004333 ORTHO05D005363 1.2e-06 61.2 120 39.2
Psat0ss3938g0040 Pisum sativum HOM05D001673 ORTHO05D000895 3.6e-06 59.7 42 66.7


User provided reference genes

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