Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 2.9e-94 349.0 239 100.0
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 1.7e-78 296.6 239 90.0
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.1e-76 288.1 240 89.2
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.7e-73 278.9 240 87.5
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.0e-70 270.8 259 61.0
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 4.3e-69 265.4 239 83.3
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.5e-66 256.9 239 83.7
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 9.8e-66 254.2 199 94.0
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.2e-65 253.1 200 94.5
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.9e-65 252.7 199 95.0
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.9e-64 250.0 258 58.1
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.4e-64 249.6 239 80.8
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 1.2e-63 247.3 250 68.4
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 3.5e-63 245.7 239 81.2
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 1.0e-62 244.2 241 79.3
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 3.9e-62 242.3 241 80.1
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 1.1e-61 240.7 239 78.7
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 1.1e-61 240.7 239 78.7
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.5e-61 240.4 200 76.5
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 1.5e-61 240.4 239 79.1
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 1.9e-61 240.0 239 78.2
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 1.9e-61 240.0 254 75.6
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 3.3e-61 239.2 239 79.5
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 3.3e-61 239.2 238 77.7
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 4.3e-61 238.8 239 78.2
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 9.5e-61 237.7 241 77.6
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 1.2e-60 237.3 239 78.2
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.2e-60 237.3 239 79.5
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 2.1e-60 236.5 239 79.5
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 6.2e-60 235.0 240 77.5
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 1.8e-59 233.4 239 78.2
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 1.8e-59 233.4 238 76.9
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 1.8e-59 233.4 239 76.2
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 4.0e-59 232.3 242 78.1
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 4.0e-59 232.3 241 78.8
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 8.9e-59 231.1 239 76.6
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 1.2e-58 230.7 240 78.8
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 1.5e-58 230.3 233 76.8
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 3.4e-58 229.2 263 61.2
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 4.4e-58 228.8 242 76.9
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 4.4e-58 228.8 239 76.2
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 5.8e-58 228.4 239 75.3
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 7.5e-58 228.0 242 76.4
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 9.9e-58 227.6 239 75.7
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 2.9e-57 226.1 236 77.1
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 6.4e-57 224.9 239 75.7
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 8.3e-57 224.6 229 78.2
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 2.4e-56 223.0 228 77.2
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 1.2e-55 220.7 191 88.5
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 2.1e-55 219.9 240 74.6
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 3.5e-55 219.2 244 75.4
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 3.5e-55 219.2 245 74.7
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 4.6e-55 218.8 244 72.5
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 1.3e-54 217.2 239 74.1
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 1.7e-54 216.9 239 74.1
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 2.3e-54 216.5 243 73.7
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 6.6e-54 214.9 187 86.1
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 8.6e-54 214.5 160 73.8
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.1e-53 214.2 130 86.9
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.1e-53 214.2 130 86.9
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.5e-53 213.8 129 87.6
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.9e-53 213.4 239 58.6
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 1.9e-53 213.4 238 74.4
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 4.3e-53 212.2 244 73.0
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 5.6e-53 211.8 217 77.4
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.3e-53 211.5 130 85.4
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 9.5e-53 211.1 242 71.1
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 1.6e-52 210.3 218 79.4
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.1e-52 209.9 130 85.4
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 2.1e-52 209.9 240 73.8
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.8e-52 209.5 239 59.0
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 2.8e-52 209.5 185 89.2
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 2.8e-52 209.5 238 73.5
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 3.6e-52 209.1 238 73.1
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.6e-52 209.1 238 73.1
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 3.6e-52 209.1 192 83.9
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 4.7e-52 208.8 242 70.7
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 6.2e-52 208.4 238 73.1
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.2e-52 208.4 132 82.6
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 8.1e-52 208.0 240 72.9
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 1.1e-51 207.6 240 64.6
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 1.4e-51 207.2 234 73.5
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 1.4e-51 207.2 233 74.2
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 1.4e-51 207.2 241 75.1
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 1.4e-51 207.2 242 70.7
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.4e-51 206.5 131 84.0
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 3.1e-51 206.1 241 72.6
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 3.1e-51 206.1 202 79.7
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 3.1e-51 206.1 180 91.1
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 4.0e-51 205.7 238 73.9
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 5.2e-51 205.3 243 71.6
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 5.2e-51 205.3 207 79.2
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 1.5e-50 203.8 160 70.6
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 2.0e-50 203.4 241 72.2
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 2.6e-50 203.0 242 71.9
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 3.4e-50 202.6 185 88.1
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 2.2e-49 199.9 194 82.5
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 4.9e-49 198.7 186 85.5
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 6.4e-49 198.4 241 70.5
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.1e-48 197.6 211 57.8
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.1e-48 197.6 211 57.8
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 4.1e-48 195.7 193 80.8
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 6.0e-47 191.8 207 77.3
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 1.7e-46 190.3 241 68.0
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 5.1e-46 188.7 191 79.1
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 6.6e-46 188.3 241 66.4
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 6.6e-46 188.3 243 67.5
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 2.5e-45 186.4 243 68.3
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 5.6e-45 185.3 191 79.1
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 1.4e-43 180.6 240 66.7
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 1.8e-43 180.3 124 75.0
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 1.8e-43 180.3 243 67.5
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 2.4e-43 179.9 241 66.4
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 3.1e-43 179.5 242 66.1
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 3.1e-43 179.5 242 66.1
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 3.1e-43 179.5 242 66.1
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 9.0e-43 177.9 186 79.6
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 1.6e-39 167.2 214 69.6
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 1.0e-38 164.5 166 84.3
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.0e-38 164.5 157 87.9
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.7e-38 163.7 158 86.1
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 2.5e-37 159.8 206 67.5
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.3e-37 159.5 160 58.8
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 1.5e-34 150.6 136 56.6
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 4.9e-33 145.6 106 70.8
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 7.1e-32 141.7 204 61.8
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 2.7e-31 139.8 156 80.1
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 9.6e-21 104.8 64 75.0
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 2.2e-12 77.0 116 78.4
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 3.7e-12 76.3 180 40.6
COL.COLO4_06666 Corchorus olitorius HOM05D005832 ORTHO05D007117 1.4e-08 64.3 56 62.5
Cpa.g.sc3.109 Carica papaya HOM05D005832 ORTHO05D007117 5.5e-08 62.4 82 47.6


User provided reference genes

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