Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G196700 Theobroma cacao HOM05D001081 ORTHO05D004708 3.7e-271 937.6 461 100.0
Thecc.03G199500 Theobroma cacao HOM05D001081 ORTHO05D004708 4.0e-140 502.3 504 59.1
COL.COLO4_16768 Corchorus olitorius HOM05D001081 ORTHO05D004708 1.4e-108 397.5 502 49.2
Gohir.D11G015300 Gossypium hirsutum HOM05D001081 ORTHO05D004708 5.3e-100 369.0 504 46.2
Cfa016233 Carpinus fangiana HOM05D001081 ORTHO05D004708 2.6e-99 366.7 486 45.7
Gorai.007G015700 Gossypium raimondii HOM05D001081 ORTHO05D004708 4.5e-99 365.9 504 45.8
Gohir.A11G015200 Gossypium hirsutum HOM05D001081 ORTHO05D004708 2.5e-97 360.1 502 45.4
QL09p008772 Quercus lobata HOM05D001081 ORTHO05D004708 1.1e-94 351.3 510 44.9
CiPaw.06G046000 Carya illinoinensis HOM05D001081 ORTHO05D004708 4.1e-92 342.8 498 43.6
Dinv35339 Davidia involucrata HOM05D001081 ORTHO05D004708 1.3e-90 337.8 494 43.5
Cpa.g.sc3.89 Carica papaya HOM05D001081 ORTHO05D004708 1.1e-89 334.7 517 42.2
Atru.chr12.2203 Acer truncatum HOM05D001081 ORTHO05D004708 4.2e-89 332.8 493 42.8
TAR375G0280 Trochodendron aralioides HOM05D001081 ORTHO05D004708 4.5e-83 312.8 492 41.5
Manes.01G183500 Manihot esculenta HOM05D001081 ORTHO05D004708 3.8e-82 309.7 502 40.4
Potri.012G016100 Populus trichocarpa HOM05D001081 ORTHO05D004708 3.6e-80 303.1 485 41.0
GSVIVG01038555001 Vitis vinifera HOM05D001081 ORTHO05D004708 3.9e-79 299.7 509 40.3
Sabra12G0016000 Salix brachista HOM05D001081 ORTHO05D004708 2.6e-78 297.0 486 40.3
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 5.7e-78 295.8 456 41.2
CSS0032097 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D004708 9.7e-78 295.0 470 40.2
Nn1g00260 Nelumbo nucifera HOM05D001081 ORTHO05D004708 1.5e-75 287.7 487 38.6
vmacro06386 Vaccinium macrocarpon HOM05D001081 ORTHO05D004708 2.6e-75 287.0 465 39.6
TWI39G0445 Tripterygium wilfordii HOM05D001081 ORTHO05D004708 7.7e-75 285.4 514 39.5
Rhsim03G0209100 Rhododendron simsii HOM05D001081 ORTHO05D004708 2.2e-74 283.9 488 40.0
Peaxi162Scf00740g00138 Petunia axillaris HOM05D001081 ORTHO05D004708 8.5e-74 282.0 491 40.1
Ciclev10018477m.g Citrus clementina HOM05D001081 ORTHO05D004708 1.4e-73 281.2 498 38.4
MBI06_g13415_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D004708 2.5e-73 280.4 507 39.1
MD07G1288100 Malus domestica HOM05D001081 ORTHO05D004708 2.7e-72 276.9 354 46.0
Sopen03g022900 Solanum pennellii HOM05D001081 ORTHO05D004708 6.1e-72 275.8 484 38.2
Nitab4.5_0000548g0110 Nicotiana tabacum HOM05D001081 ORTHO05D004708 7.9e-72 275.4 478 38.7
Solyc03g083130.3 Solanum lycopersicum HOM05D001081 ORTHO05D004708 6.7e-71 272.3 484 38.2
vmacro22638 Vaccinium macrocarpon HOM05D001081 ORTHO05D004708 3.3e-70 270.0 493 39.4
RcHm_v2.0_Chr1g0380531 Rosa chinensis HOM05D001081 ORTHO05D004708 5.7e-70 269.2 484 38.0
Prupe.2G309600 Prunus persica HOM05D001081 ORTHO05D004708 1.3e-69 268.1 351 46.2
THA.LOC104798901 Tarenaya hassleriana HOM05D001081 ORTHO05D004708 2.2e-69 267.3 489 37.6
CAN.G481.14 Capsicum annuum HOM05D001081 ORTHO05D004708 4.8e-69 266.2 485 36.7
Lalb_Chr10g0091361 Lupinus albus HOM05D001081 ORTHO05D004708 6.3e-69 265.8 484 37.0
Actinidia08651 Actinidia chinensis HOM05D001081 ORTHO05D004708 4.1e-68 263.1 465 39.1
Carub.0006s2205 Capsella rubella HOM05D001081 ORTHO05D004708 4.5e-67 259.6 500 35.6
Nitab4.5_0006933g0030 Nicotiana tabacum HOM05D001081 ORTHO05D004708 4.5e-67 259.6 532 35.0
FAN06G1778 Fragaria x ananassa HOM05D001081 ORTHO05D004708 1.7e-66 257.7 489 37.6
FAN06G3553 Fragaria x ananassa HOM05D001081 ORTHO05D004708 1.7e-66 257.7 489 37.6
Eucgr.G00110 Eucalyptus grandis HOM05D001081 ORTHO05D004708 2.2e-66 257.3 423 38.3
FAN01G0187 Fragaria x ananassa HOM05D001081 ORTHO05D004708 3.8e-66 256.5 489 37.2
FvH4_7g31550 Fragaria vesca HOM05D001081 ORTHO05D004708 5.0e-66 256.1 489 36.8
Eucgr.G00091 Eucalyptus grandis HOM05D001081 ORTHO05D004708 1.9e-65 254.2 416 39.7
BcaNung01806 Brassica carinata HOM05D001081 ORTHO05D004708 5.5e-65 252.7 488 36.3
Oeu041052.4 Olea europaea HOM05D001081 ORTHO05D004708 9.4e-65 251.9 498 35.3
Cc02_g01510 Coffea canephora HOM05D001081 ORTHO05D004708 1.0e-63 248.4 358 42.2
Thhalv10003512m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 1.0e-63 248.4 498 35.7
AT5G24280 Arabidopsis thaliana HOM05D001081 ORTHO05D004708 1.4e-63 248.1 491 36.3
BraA06t26425Z Brassica rapa HOM05D001081 ORTHO05D004708 1.8e-63 247.7 482 37.3
CARHR189220 Cardamine hirsuta HOM05D001081 ORTHO05D004708 4.0e-63 246.5 484 36.2
Lj1C1018T17 Lonicera japonica HOM05D001081 ORTHO05D004708 6.7e-63 245.7 310 47.4
Aqoxy3G00072 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 1.2e-62 245.0 489 35.8
Aa31LG11G3510 Aethionema arabicum HOM05D001081 ORTHO05D004708 1.5e-62 244.6 525 34.5
AL6G35710 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 1.5e-62 244.6 493 36.1
A06p35020 Brassica napus HOM05D001081 ORTHO05D004708 2.0e-62 244.2 482 36.7
Thhalv10003513m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 4.4e-62 243.0 487 35.3
BcaNung01219 Brassica carinata HOM05D001081 ORTHO05D004708 5.7e-62 242.7 487 34.3
C07p43490 Brassica napus HOM05D001081 ORTHO05D004708 5.7e-62 242.7 489 34.6
PSO063G4550 Papaver somniferum HOM05D001081 ORTHO05D004708 5.7e-62 242.7 486 37.7
C07p43530 Brassica napus HOM05D001081 ORTHO05D004708 9.7e-62 241.9 483 35.4
BolC7t44880H Brassica oleracea HOM05D001081 ORTHO05D004708 9.7e-62 241.9 483 35.4
AUR62006087 Chenopodium quinoa HOM05D001081 ORTHO05D004708 1.3e-61 241.5 348 42.2
Lsat_1_v5_gn_8_5261 Lactuca sativa HOM05D001081 ORTHO05D004708 1.7e-61 241.1 492 35.6
BraA06t26428Z Brassica rapa HOM05D001081 ORTHO05D004708 4.8e-61 239.6 489 34.8
CANSAT21G0069 Cannabis sativa HOM05D001081 ORTHO05D004708 4.8e-61 239.6 489 35.0
CANSAT21G2573 Cannabis sativa HOM05D001081 ORTHO05D004708 8.2e-61 238.8 493 34.7
Sp2g23080 Schrenkiella parvula HOM05D001081 ORTHO05D004708 8.2e-61 238.8 505 34.7
Sabra11G0071800 Salix brachista HOM05D001060 ORTHO05D004708 1.6e-59 234.6 465 38.3
ATR0602G075 Amborella trichopoda HOM05D001081 ORTHO05D004708 1.3e-58 231.5 499 34.5
Migut.F00209 Erythranthe guttata HOM05D001081 ORTHO05D004708 2.9e-58 230.3 488 34.2
BolC7t44875H Brassica oleracea HOM05D001081 ORTHO05D004708 3.8e-58 229.9 513 33.5
CARHR189250 Cardamine hirsuta HOM05D001081 ORTHO05D004708 3.8e-58 229.9 489 33.9
Lj1C1020T7 Lonicera japonica HOM05D001081 ORTHO05D004708 3.8e-58 229.9 281 47.7
A06p35070 Brassica napus HOM05D001081 ORTHO05D004708 5.0e-58 229.6 509 33.4
CARHR189240 Cardamine hirsuta HOM05D001081 ORTHO05D004708 6.5e-58 229.2 350 41.4
AUR62019407 Chenopodium quinoa HOM05D001081 ORTHO05D004708 6.5e-58 229.2 363 39.1
Hund21007 Selenicereus undatus HOM05D001081 ORTHO05D004708 1.6e-56 224.6 467 32.8
EL10Ac3g05278 Beta vulgaris HOM05D001081 ORTHO05D004708 1.2e-54 218.4 495 34.3
Eucgr.H05019 Eucalyptus grandis HOM05D001081 ORTHO05D004708 2.8e-53 213.8 403 37.0
Carub.0006s2203 Capsella rubella HOM05D001081 ORTHO05D004708 6.3e-53 212.6 516 31.4
Ah.07g205570 Amaranthus hybridus HOM05D001081 ORTHO05D004708 1.1e-52 211.8 350 37.4
SalBow4G1120 Salvia bowleyana HOM05D001081 ORTHO05D004708 8.6e-50 202.2 513 32.9
Hma1.2p1_0404F.1_g145360 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 1.5e-38 164.9 282 40.1
RcHm_v2.0_Chr1g0381531 Rosa chinensis HOM05D001081 ORTHO05D004708 5.7e-38 162.9 254 40.6
Glyma.17G128700 Glycine max HOM05D001081 ORTHO05D004708 4.9e-37 159.8 247 40.9
Lj4g0008522 Lotus japonicus HOM05D001081 ORTHO05D004708 7.0e-36 156.0 245 39.6
HanXRQChr08g0225291 Helianthus annuus HOM05D001081 ORTHO05D004708 1.2e-35 155.2 179 48.6
Sabra15G0067900 Salix brachista HOM05D001081 ORTHO05D004708 1.2e-35 155.2 246 44.3
Ca_12793_v3 Cicer arietinum L. HOM05D001081 ORTHO05D004708 7.8e-35 152.5 247 39.7
Medtr1g008050 Medicago truncatula HOM05D001081 ORTHO05D004708 6.6e-34 149.4 158 51.9
CANSAT21G1825 Cannabis sativa HOM05D001081 ORTHO05D004708 3.1e-31 140.6 257 35.0
HanXRQChr08g0225341 Helianthus annuus HOM05D001081 ORTHO05D004708 4.0e-31 140.2 162 49.4
Psat6g034720 Pisum sativum HOM05D001081 ORTHO05D004708 6.8e-31 139.4 165 50.3
TPR.G12082 Trifolium pratense HOM05D001081 ORTHO05D004708 6.8e-31 139.4 166 48.2
Medtr1g007990 Medicago truncatula HOM05D001081 ORTHO05D004708 7.5e-30 136.0 237 38.0
Hma1.2p1_0404F.1_g145390 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 1.9e-28 131.3 147 50.3
SGA_v2.0_scaffold192G40538 Striga asiatica HOM05D001081 ORTHO05D004708 5.4e-28 129.8 434 28.1
PSO781G0289 Papaver somniferum HOM05D001081 ORTHO05D004708 1.6e-27 128.3 247 34.8
HanXRQChr08g0225281 Helianthus annuus HOM05D001081 ORTHO05D004708 1.4e-23 115.2 143 42.0
DCAR_008928 Daucus carota HOM05D001081 ORTHO05D004708 1.8e-23 114.8 343 29.4
DCAR_008935 Daucus carota HOM05D001081 ORTHO05D004708 1.5e-22 111.7 275 32.0
ECA233G5228 Erigeron canadensis HOM05D001081 ORTHO05D004708 3.4e-22 110.5 271 31.0
HanXRQChr08g0225331 Helianthus annuus HOM05D001081 ORTHO05D004708 1.9e-17 94.7 228 30.7
Hma1.2p1_0404F.1_g145350 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 3.3e-17 94.0 103 51.5
HanXRQChr08g0225301 Helianthus annuus HOM05D001081 ORTHO05D004708 7.3e-17 92.8 313 26.8
Sopen03g022930 Solanum pennellii HOM05D001081 ORTHO05D004708 1.5e-14 85.1 108 49.1
Aqoxy4G01594 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 3.8e-13 80.5 138 38.4
SEGI_17438 Sequoiadendron giganteum HOM05D001081 ORTHO05D004708 4.9e-13 80.1 160 37.5
Eucgr.K00385 Eucalyptus grandis HOM05D001081 ORTHO05D004708 6.4e-13 79.7 196 32.1
AagrBONN_evm.TU.Sc2ySwM_117.3719 Anthoceros agrestis HOM05D001081 ORTHO05D004708 3.5e-11 73.9 361 25.2
AagrBONN_evm.TU.Sc2ySwM_228.1615 Anthoceros agrestis HOM05D001081 ORTHO05D004708 1.0e-10 72.4 365 25.2
Mapoly0076s0015 Marchantia polymorpha HOM05D001081 ORTHO05D004708 1.0e-10 72.4 287 27.2
BcaNung01800 Brassica carinata HOM05D001081 ORTHO05D004708 3.0e-10 70.9 205 29.8
Mapoly0111s0028 Marchantia polymorpha HOM05D001081 ORTHO05D004708 3.0e-10 70.9 364 23.9
SEGI_22535 Sequoiadendron giganteum HOM05D001081 ORTHO05D004708 3.3e-09 67.4 103 38.8
Lsat_1_v5_gn_8_60400 Lactuca sativa HOM05D001081 ORTHO05D001168 2.1e-08 64.7 36 75.0
AL6G35700 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 2.8e-08 64.3 191 30.4
Lsat_1_v5_gn_0_23101 Lactuca sativa HOM05D001081 ORTHO05D013496 3.6e-08 63.9 36 72.2
Sopen03g022630 Solanum pennellii HOM05D001081 ORTHO05D003320 2.6e-06 57.8 61 49.2


User provided reference genes

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