Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G177600 Theobroma cacao HOM05D000368 ORTHO05D009348 4.6e-130 468.4 331 100.0
Gohir.D12G258500 Gossypium hirsutum HOM05D000368 ORTHO05D009348 3.1e-62 243.0 274 75.9
Gorai.008G276900 Gossypium raimondii HOM05D000368 ORTHO05D009348 4.1e-62 242.7 273 75.8
Gohir.A12G257200 Gossypium hirsutum HOM05D000368 ORTHO05D009348 2.5e-59 233.4 274 75.5
Duzib205G0377 Durio zibethinus HOM05D000368 ORTHO05D000289 2.7e-53 213.4 260 75.4
Manes.14G025600 Manihot esculenta HOM05D000368 ORTHO05D009348 2.6e-48 196.8 278 69.8
Dinv35216 Davidia involucrata HOM05D000368 ORTHO05D000289 7.0e-46 188.7 283 66.4
Potri.012G141700 Populus trichocarpa HOM05D000368 ORTHO05D009348 4.6e-45 186.0 285 65.6
Potri.015G144600 Populus trichocarpa HOM05D000368 ORTHO05D009348 7.8e-45 185.3 285 65.6
Sabra15G0154200 Salix brachista HOM05D000368 ORTHO05D009348 1.5e-43 181.0 285 66.0
Cfa008323 Carpinus fangiana HOM05D000368 ORTHO05D009348 2.5e-43 180.3 286 66.4
TAR629G3168 Trochodendron aralioides HOM05D000368 ORTHO05D009348 1.2e-42 177.9 327 57.8
Rhsim09G0197900 Rhododendron simsii HOM05D000368 ORTHO05D009348 5.2e-41 172.6 281 63.3
Ciclev10005579m.g Citrus clementina HOM05D000368 ORTHO05D009348 6.8e-41 172.2 286 65.0
GSVIVG01028962001 Vitis vinifera HOM05D000368 ORTHO05D009348 2.2e-39 167.2 286 63.3
Cc02_g02880 Coffea canephora HOM05D000368 ORTHO05D009348 1.1e-38 164.9 284 58.8
CiPaw.04G071400 Carya illinoinensis HOM05D000368 ORTHO05D009348 2.4e-38 163.7 286 62.9
Eucgr.K00263 Eucalyptus grandis HOM05D000368 ORTHO05D009348 2.0e-37 160.6 297 58.9
Aa31LG3G8750 Aethionema arabicum HOM05D000368 ORTHO05D009348 2.7e-37 160.2 285 61.8
Prupe.2G295100 Prunus persica HOM05D000368 ORTHO05D009348 4.6e-37 159.5 284 55.6
Hund11743 Selenicereus undatus HOM05D000368 ORTHO05D009348 4.6e-37 159.5 290 61.7
MD07G1269700 Malus domestica HOM05D000368 ORTHO05D009348 1.7e-36 157.5 287 57.1
Sopen03g004560 Solanum pennellii HOM05D000368 ORTHO05D009348 1.7e-36 157.5 277 65.7
FAN06G0492 Fragaria x ananassa HOM05D000368 ORTHO05D009348 3.0e-36 156.8 287 56.8
FAN06G1486 Fragaria x ananassa HOM05D000368 ORTHO05D009348 3.0e-36 156.8 287 56.8
Solyc03g025740.4 Solanum lycopersicum HOM05D000368 ORTHO05D009348 3.9e-36 156.4 277 65.3
ClCG05G008070 Citrullus lanatus HOM05D000368 ORTHO05D009348 5.0e-36 156.0 276 68.5
RcHm_v2.0_Chr1g0377401 Rosa chinensis HOM05D000368 ORTHO05D009348 5.0e-36 156.0 287 55.7
Haze_13700 Corylus avellana HOM05D000368 ORTHO05D009348 6.6e-36 155.6 267 66.7
arahy.Tifrunner.gnm1.ann1.C4Z81U Arachis hypogaea HOM05D000368 ORTHO05D009348 1.1e-35 154.8 283 64.0
Lalb_Chr21g0305051 Lupinus albus HOM05D000368 ORTHO05D009348 1.1e-35 154.8 279 62.4
ECA238G2658 Erigeron canadensis HOM05D000368 ORTHO05D000289 1.9e-35 154.1 283 64.0
PGSC0003DMG402014344 Solanum tuberosum HOM05D000368 ORTHO05D009348 5.6e-35 152.5 277 64.3
CsaV3_3G017130 Cucumis sativus L. HOM05D000368 ORTHO05D009348 7.3e-35 152.1 276 68.8
PGR142G2510 Punica granatum HOM05D000368 ORTHO05D009348 7.3e-35 152.1 285 64.6
VMungo0720G3173 Vigna mungo HOM05D000368 ORTHO05D009348 7.3e-35 152.1 280 60.7
Sc19g0001470 Simmondsia chinensis HOM05D000368 ORTHO05D009348 1.2e-34 151.4 285 65.3
QL09p014019 Quercus lobata HOM05D000368 ORTHO05D009348 1.6e-34 151.0 320 57.8
Cpa.g.sc107.59 Carica papaya HOM05D000368 ORTHO05D009348 2.1e-34 150.6 286 64.0
arahy.Tifrunner.gnm1.ann1.HM7G91 Arachis hypogaea HOM05D000368 ORTHO05D009348 3.6e-34 149.8 281 61.6
TWI39G0209 Tripterygium wilfordii HOM05D000368 ORTHO05D009348 3.6e-34 149.8 290 61.7
MELO3C006911.2 Cucumis melo HOM05D000368 ORTHO05D009348 6.2e-34 149.1 242 69.0
THA.LOC104811975 Tarenaya hassleriana HOM05D000368 ORTHO05D009348 6.2e-34 149.1 285 59.6
HanXRQChr07g0207001 Helianthus annuus HOM05D000368 ORTHO05D009348 2.3e-33 147.1 289 60.2
MD01G1201700 Malus domestica HOM05D000368 ORTHO05D009348 2.3e-33 147.1 288 59.7
FAN10G1532 Fragaria x ananassa HOM05D000368 ORTHO05D009348 3.1e-33 146.7 288 60.8
Ah.13g068650 Amaranthus hybridus HOM05D000368 ORTHO05D009348 4.0e-33 146.4 283 56.2
Carub.0008s1248 Capsella rubella HOM05D000368 ORTHO05D009348 1.2e-32 144.8 278 64.4
MSTRG.8734 Avicennia marina HOM05D000368 ORTHO05D009348 2.0e-32 144.1 275 65.1
FAN10G1519 Fragaria x ananassa HOM05D000368 ORTHO05D009348 4.4e-32 142.9 284 59.9
Glyma.20G159100 Glycine max HOM05D000368 ORTHO05D009348 4.4e-32 142.9 276 60.5
Hma1.2p1_0270F.1_g107970 Hydrangea macrophylla HOM05D000368 ORTHO05D009348 9.8e-32 141.7 290 62.1
Lj5g0009535 Lotus japonicus HOM05D000368 ORTHO05D009348 1.7e-31 141.0 275 62.2
AL8G26780 Arabidopsis lyrata HOM05D000368 ORTHO05D009348 3.7e-31 139.8 281 60.9
Nn1g01474 Nelumbo nucifera HOM05D000368 ORTHO05D009348 6.4e-31 139.0 293 60.4
EL10Ac3g05631 Beta vulgaris HOM05D000368 ORTHO05D009348 8.3e-31 138.7 279 57.3
Glyma.10G235200 Glycine max HOM05D000368 ORTHO05D009348 1.1e-30 138.3 277 60.3
CANSAT21G1838 Cannabis sativa HOM05D000368 ORTHO05D009348 1.4e-30 137.9 247 70.4
CARHR265330 Cardamine hirsuta HOM05D000368 ORTHO05D009348 5.4e-30 136.0 283 61.1
FAN01G1188 Fragaria x ananassa HOM05D000368 ORTHO05D009348 9.2e-30 135.2 257 56.8
AT5G52380 Arabidopsis thaliana HOM05D000368 ORTHO05D009348 1.2e-29 134.8 280 58.2
Ca_10757_v3 Cicer arietinum L. HOM05D000368 ORTHO05D009348 1.2e-29 134.8 275 38.9
Sed0010584 Sechium edule HOM05D000368 ORTHO05D009348 1.6e-29 134.4 276 64.5
TPR.G27005 Trifolium pratense HOM05D000368 ORTHO05D009348 1.6e-29 134.4 276 44.2
Psat0s3135g0040 Pisum sativum HOM05D000368 ORTHO05D009348 2.7e-29 133.7 274 59.1
Lsat_1_v5_gn_2_132381 Lactuca sativa HOM05D000368 ORTHO05D009348 3.5e-29 133.3 280 61.1
Aqoxy5G04003 Aquilegia oxysepala HOM05D000368 ORTHO05D009348 3.0e-28 130.2 283 62.5
Phvul.007G070700 Phaseolus vulgaris HOM05D000368 ORTHO05D009348 3.9e-28 129.8 275 55.6
SGA_v2.0_scaffold44G16725 Striga asiatica HOM05D000368 ORTHO05D009348 5.1e-28 129.4 282 59.6
PSO782G2079 Papaver somniferum HOM05D000368 ORTHO05D009348 1.9e-27 127.5 291 58.4
PSO063G1784 Papaver somniferum HOM05D000368 ORTHO05D009348 9.5e-27 125.2 299 55.5
DCAR_020244 Daucus carota HOM05D000368 ORTHO05D009348 1.6e-26 124.4 247 61.1
FvH4_7g29542 Fragaria vesca HOM05D000368 ORTHO05D009348 2.1e-26 124.0 159 51.6
CSS0028945 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D009348 3.6e-26 123.2 153 65.4
CSS0042203 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D009348 4.7e-26 122.9 153 61.4
Nitab4.5_0002117g0050 Nicotiana tabacum HOM05D000368 ORTHO05D009348 8.1e-26 122.1 309 47.2
vmacro09836 Vaccinium macrocarpon HOM05D000368 ORTHO05D000289 1.1e-25 121.7 266 44.4
Thhalv10014379m.g Eutrema salsugineum HOM05D000368 ORTHO05D009348 2.3e-25 120.6 285 60.4
Atru.BG.181.p Acer truncatum HOM05D000368 ORTHO05D009348 6.8e-25 119.0 104 60.6
Atru.chr1.452 Acer truncatum HOM05D000368 ORTHO05D009348 6.8e-25 119.0 104 60.6
Dinv24555 Davidia involucrata HOM05D000368 ORTHO05D009348 1.5e-24 117.9 108 63.0
MBI17_g19093_MAGBIO Magnolia biondii HOM05D000368 ORTHO05D009348 1.5e-24 117.9 308 49.7
Sp6g14600 Schrenkiella parvula HOM05D000368 ORTHO05D000289 1.7e-23 114.4 278 58.6
Dinv28433 Davidia involucrata HOM05D000368 ORTHO05D009348 4.9e-23 112.8 106 62.3
Actinidia31822 Actinidia chinensis HOM05D000368 ORTHO05D009348 8.4e-23 112.1 157 68.2
AUR62015971 Chenopodium quinoa HOM05D000368 ORTHO05D009348 1.1e-22 111.7 236 63.6
A03p15700 Brassica napus HOM05D000368 ORTHO05D000289 5.4e-22 109.4 279 62.0
C03p18350 Brassica napus HOM05D000368 ORTHO05D000289 5.4e-22 109.4 279 61.3
BolC3t14232H Brassica oleracea HOM05D000368 ORTHO05D000289 7.1e-22 109.0 279 61.3
Migut.F00336 Erythranthe guttata HOM05D000368 ORTHO05D009348 9.2e-22 108.6 283 61.1
BraA03t10861Z Brassica rapa HOM05D000368 ORTHO05D000289 1.9e-19 100.9 295 51.2
C09p41730 Brassica napus HOM05D000368 ORTHO05D000289 9.6e-19 98.6 105 56.2
BolC9t57061H Brassica oleracea HOM05D000368 ORTHO05D009348 9.6e-19 98.6 105 56.2
Zm00001eb074410 Zea mays HOM05D000368 ORTHO05D009348 1.2e-18 98.2 297 52.2
HPP92_018588 Vanilla planifolia HOM05D000368 ORTHO05D009348 2.4e-17 94.0 277 53.1
ATR0680G368 Amborella trichopoda HOM05D000368 ORTHO05D009348 3.1e-17 93.6 292 55.1
HPP92_006518 Vanilla planifolia HOM05D000368 ORTHO05D009348 1.2e-16 91.7 277 52.3
Dinv24556 Davidia involucrata HOM05D000368 ORTHO05D009348 7.6e-16 89.0 160 68.1
Os04g0555800 Oryza sativa ssp. japonica HOM05D000368 ORTHO05D009348 8.4e-15 85.5 106 48.1
AagrBONN_evm.TU.Sc2ySwM_117.528 Anthoceros agrestis HOM05D000368 ORTHO05D009348 1.0e-12 78.6 199 58.8
SEGI_15321 Sequoiadendron giganteum HOM05D000368 ORTHO05D009348 6.6e-12 75.9 107 46.7
Actinidia03122 Actinidia chinensis HOM05D000368 ORTHO05D009348 7.3e-11 72.4 85 52.9
Nitab4.5_0001842g0090 Nicotiana tabacum HOM05D000368 ORTHO05D009348 2.1e-10 70.9 273 37.4
Pp3c16_20170 Physcomitrium patens HOM05D000368 ORTHO05D009348 6.2e-10 69.3 41 65.9
arahy.Tifrunner.gnm1.ann1.4PMG8D Arachis hypogaea HOM05D000368 ORTHO05D009348 3.4e-08 63.5 77 50.6
Mapoly0006s0064 Marchantia polymorpha HOM05D000368 ORTHO05D009348 4.5e-08 63.2 208 50.0
BraA10t43080Z Brassica rapa HOM05D000368 ORTHO05D009348 1.7e-07 61.2 34 67.6
A10p09970 Brassica napus HOM05D000368 ORTHO05D009348 8.4e-07 58.9 28 78.6
CSS0015725 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D009348 2.4e-06 57.4 61 52.5


User provided reference genes

Program Settings