Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 2.3e-305 1051.6 591 100.0
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 4.7e-194 681.8 607 66.7
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 4.6e-149 532.3 597 57.6
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 6.0e-149 531.9 606 56.1
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 2.8e-146 523.1 600 57.7
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 1.3e-114 417.9 509 53.2
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.0e-108 398.3 618 45.6
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 3.8e-95 353.2 629 49.0
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 2.8e-85 320.5 617 41.8
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 9.2e-81 305.4 655 38.9
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 1.5e-78 298.1 638 44.8
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 6.6e-71 272.7 531 39.7
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 8.1e-69 265.8 509 40.3
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 3.4e-67 260.4 641 38.8
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 4.4e-67 260.0 614 37.6
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 3.3e-62 243.8 600 35.0
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 1.9e-57 228.0 620 34.8
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 3.6e-53 213.8 603 33.7
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 5.3e-52 209.9 597 33.8
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 2.0e-51 208.0 688 32.0
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 2.0e-51 208.0 634 37.7
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 2.6e-51 207.6 675 31.7
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.6e-51 207.6 666 33.0
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 4.5e-51 206.8 604 34.3
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 4.5e-51 206.8 339 43.1
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 7.6e-51 206.1 324 43.2
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 1.1e-49 202.2 705 31.8
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 2.1e-48 198.0 354 40.4
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 2.7e-48 197.6 630 32.1
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 4.6e-48 196.8 335 42.4
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 6.0e-48 196.4 334 42.5
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 7.9e-48 196.1 718 31.1
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 7.9e-48 196.1 652 33.0
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.0e-47 195.7 609 35.3
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.9e-47 193.7 338 39.1
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 6.7e-47 193.0 677 32.8
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 5.6e-46 189.9 647 33.2
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 6.2e-45 186.4 351 40.5
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 8.1e-45 186.0 678 32.7
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.5e-43 181.8 342 39.5
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 2.0e-43 181.4 686 30.8
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 3.4e-43 180.6 372 39.8
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.9e-43 179.1 773 29.9
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 4.9e-42 176.8 640 31.4
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 6.4e-42 176.4 661 30.9
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 3.2e-41 174.1 638 31.0
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.2e-41 173.7 767 30.2
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.1e-40 171.4 602 31.7
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 2.7e-40 171.0 638 31.2
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 2.7e-40 171.0 638 31.2
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.7e-40 171.0 320 40.0
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.3e-39 168.7 322 39.8
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 2.3e-39 167.9 478 34.7
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.1e-39 166.8 687 30.4
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 4.3e-38 163.7 363 38.0
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 5.6e-38 163.3 404 33.9
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 5.6e-38 163.3 348 37.6
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 2.8e-37 161.0 625 30.6
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 3.7e-37 160.6 425 33.2
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.7e-37 160.6 692 30.9
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 6.2e-37 159.8 585 30.1
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 8.1e-37 159.5 464 33.6
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 1.5e-35 155.2 424 33.7
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 3.4e-35 154.1 361 35.7
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 3.4e-35 154.1 386 35.5
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.0e-34 152.5 376 34.8
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.3e-34 152.1 407 36.9
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.9e-34 151.0 669 30.5
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 4.9e-34 150.2 591 29.9
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 6.5e-34 149.8 624 30.4
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 1.1e-33 149.1 286 40.6
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 5.5e-33 146.7 286 40.9
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 2.1e-32 144.8 577 30.3
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 2.7e-32 144.4 291 40.9
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 2.7e-32 144.4 380 34.5
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 6.0e-32 143.3 258 41.9
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 6.0e-32 143.3 321 36.8
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 7.9e-32 142.9 609 32.3
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.0e-31 142.5 565 30.3
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 1.3e-31 142.1 258 36.0
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.8e-31 141.7 256 38.3
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 2.3e-31 141.4 612 33.0
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 2.3e-31 141.4 621 28.5
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 3.0e-31 141.0 516 32.2
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 3.9e-31 140.6 738 28.2
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 3.9e-31 140.6 477 31.9
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 8.7e-31 139.4 564 30.1
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.5e-30 138.7 821 27.5
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 1.9e-30 138.3 352 41.2
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.5e-30 137.9 632 30.4
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 3.3e-30 137.5 523 29.4
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 4.3e-30 137.1 570 28.6
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 5.7e-30 136.7 628 30.6
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 7.4e-30 136.3 606 27.9
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 1.6e-29 135.2 630 29.0
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 1.1e-28 132.5 381 33.9
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.8e-28 131.7 323 35.9
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 4.1e-28 130.6 722 27.6
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 5.3e-28 130.2 675 29.2
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 5.3e-28 130.2 583 28.8
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 3.4e-27 127.5 250 40.8
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 3.4e-27 127.5 938 25.3
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 4.5e-27 127.1 203 43.3
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 5.9e-27 126.7 323 36.2
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 7.6e-27 126.3 298 39.9
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 7.6e-27 126.3 273 39.6
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 1.3e-26 125.6 616 31.2
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.2e-26 124.8 619 28.3
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 2.9e-26 124.4 686 26.4
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 1.1e-25 122.5 631 31.1
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 1.4e-25 122.1 716 27.0
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 7.2e-25 119.8 710 27.6
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.1e-24 118.2 272 37.9
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 2.7e-24 117.9 405 32.6
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 7.9e-24 116.3 316 34.5
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.0e-23 115.9 405 31.9
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 1.9e-22 111.7 709 26.8
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 4.3e-22 110.5 546 26.6
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 5.7e-22 110.2 223 40.4
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 1.6e-21 108.6 327 34.9
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 1.6e-21 108.6 179 43.0
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 6.3e-21 106.7 572 28.1
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 1.2e-19 102.4 242 37.6
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 1.5e-19 102.1 189 41.8
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 3.4e-19 100.9 238 40.3
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.0e-18 99.4 626 27.5
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 1.3e-18 99.0 690 26.4
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 5.0e-18 97.1 275 35.3
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 6.5e-18 96.7 753 24.8
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 6.5e-18 96.7 277 35.0
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 6.5e-18 96.7 330 29.1
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 1.4e-17 95.5 163 43.6
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 1.4e-17 95.5 235 33.6
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 4.2e-17 94.0 703 27.0
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 4.2e-17 94.0 164 43.3
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 7.2e-17 93.2 520 25.0
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 3.6e-16 90.9 164 42.7
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 7.9e-16 89.7 306 30.1
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 1.0e-15 89.4 164 42.1
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 3.0e-15 87.8 589 27.2
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 3.9e-15 87.4 217 38.2
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 8.8e-15 86.3 292 35.3
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 2.0e-14 85.1 191 39.3
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 4.4e-14 84.0 124 43.5
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.7e-13 82.0 114 43.0
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 2.8e-13 81.3 232 36.6
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.7e-13 80.9 247 34.0
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 8.2e-13 79.7 674 27.7
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 3.1e-12 77.8 675 24.7
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.0e-11 75.1 117 42.7
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.6e-11 74.7 356 28.9
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 7.7e-11 73.2 116 44.8
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 1.7e-10 72.0 92 45.7
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 5.0e-10 70.5 248 28.6
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 8.5e-10 69.7 92 44.6
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 8.5e-10 69.7 92 44.6
Zm00001eb220700 Zea mays HOM05D036983 ORTHO05D037006 1.1e-09 69.3 166 35.5
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 1.4e-09 68.9 92 44.6
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 3.2e-09 67.8 92 43.5
MBI18_g09027_MAGBIO Magnolia biondii HOM05D001888 ORTHO05D001842 4.2e-09 67.4 337 28.2
Zm00001eb044080 Zea mays HOM05D036983 ORTHO05D037006 7.2e-09 66.6 120 40.0
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 9.4e-09 66.2 275 29.1
Carub.0008s1241 Capsella rubella HOM05D004189 ORTHO05D004092 1.2e-08 65.9 230 34.8
Peaxi162Scf00234g00811 Petunia axillaris HOM05D004189 ORTHO05D004092 1.2e-08 65.9 100 42.0
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 1.6e-08 65.5 227 33.9
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 2.1e-08 65.1 507 25.8
Os10g0505900 Oryza sativa ssp. japonica HOM05D036983 ORTHO05D037006 2.1e-08 65.1 188 33.0
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 1.8e-07 62.0 100 40.0
CAN.G166.11 Capsicum annuum HOM05D004189 ORTHO05D004092 2.3e-07 61.6 133 38.3
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.3e-07 61.6 505 25.7
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 2.3e-07 61.6 111 33.3
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 2.3e-07 61.6 184 31.0
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 3.9e-07 60.8 184 31.0
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 3.9e-07 60.8 252 27.4
SalBow2G2574 Salvia bowleyana HOM05D004189 ORTHO05D004092 5.2e-07 60.5 134 37.3
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 2.0e-06 58.5 147 32.7
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 2.0e-06 58.5 154 32.5
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 2.6e-06 58.2 110 35.5
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 3.3e-06 57.8 287 30.7
Sopen01g005170 Solanum pennellii HOM05D000155 ORTHO05D000022 3.3e-06 57.8 185 29.2
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 4.4e-06 57.4 131 33.6
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 9.7e-06 56.2 65 44.6


User provided reference genes

Program Settings