Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 0.0e+00 1111.3 572 100.0
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 7.1e-272 940.3 572 85.1
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 1.0e-257 893.3 577 82.5
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.9e-256 889.0 574 82.8
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 3.9e-254 881.3 578 79.8
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 1.4e-203 713.4 577 66.4
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 2.0e-189 666.4 605 59.7
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 4.9e-188 661.8 584 61.8
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 4.9e-188 661.8 603 61.7
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 6.0e-186 654.8 631 58.5
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 3.0e-185 652.5 596 60.1
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 1.7e-180 636.7 619 59.8
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 3.6e-175 619.0 617 58.2
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.7e-172 610.1 530 62.8
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 1.7e-169 600.1 575 58.1
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 8.4e-164 581.3 584 56.8
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 5.4e-163 578.6 634 51.9
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 9.3e-163 577.8 544 61.2
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 1.5e-160 570.5 611 54.0
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 1.6e-159 567.0 600 53.8
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 2.1e-159 566.6 544 56.4
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 2.1e-159 566.6 544 56.4
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 3.7e-159 565.8 609 53.0
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 2.6e-157 559.7 587 54.9
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 9.9e-157 557.8 552 56.0
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 9.9e-157 557.8 534 56.2
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 4.9e-156 555.4 622 52.1
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 7.1e-155 551.6 585 54.0
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 9.3e-155 551.2 660 50.3
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 4.6e-154 548.9 661 50.4
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 1.0e-153 547.7 675 47.9
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 5.1e-153 545.4 668 49.9
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 9.6e-152 541.2 661 49.9
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 9.6e-152 541.2 657 47.9
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 2.8e-151 539.7 674 48.2
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 6.2e-151 538.5 623 50.4
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 2.6e-149 533.1 582 55.2
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 4.5e-149 532.3 728 45.2
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 1.3e-148 530.8 633 51.0
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.1e-147 527.7 667 48.6
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 1.9e-147 526.9 632 48.6
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 4.2e-147 525.8 548 54.2
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 1.3e-145 520.8 573 49.7
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 1.8e-145 520.4 629 48.8
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 2.3e-145 520.0 583 51.3
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 5.1e-145 518.8 693 45.5
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 1.1e-144 517.7 649 47.5
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 2.5e-144 516.5 646 47.7
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 9.7e-144 514.6 607 50.4
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 1.3e-143 514.2 704 44.3
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 1.3e-143 514.2 751 43.9
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 2.2e-143 513.5 703 46.4
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 3.7e-143 512.7 612 50.2
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 6.3e-143 511.9 611 49.9
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.1e-142 511.1 660 48.3
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 1.4e-142 510.8 593 50.9
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 9.0e-142 508.1 610 49.7
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 1.2e-141 507.7 615 48.8
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 1.2e-141 507.7 649 47.1
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 2.0e-141 506.9 637 48.8
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 3.4e-141 506.1 566 50.5
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 7.7e-141 505.0 600 49.5
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 7.7e-141 505.0 614 49.7
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 2.9e-140 503.1 621 48.5
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 6.5e-140 501.9 615 48.3
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 7.2e-139 498.4 622 48.4
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 7.2e-139 498.4 772 41.6
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 1.6e-138 497.3 538 50.9
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 3.6e-138 496.1 638 47.3
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 3.0e-137 493.0 543 52.1
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 1.5e-136 490.7 626 46.2
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 4.3e-136 489.2 632 46.2
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 7.4e-136 488.4 533 50.7
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 1.7e-135 487.3 644 45.5
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 1.4e-134 484.2 735 41.8
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 5.3e-134 482.3 579 49.2
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 2.0e-133 480.3 565 48.8
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 7.7e-133 478.4 656 45.3
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 2.9e-132 476.5 608 47.7
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 1.1e-131 474.6 439 59.9
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 1.9e-131 473.8 660 45.3
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.5e-131 473.4 579 49.4
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 2.1e-130 470.3 673 44.6
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 1.4e-129 467.6 685 43.4
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 3.3e-128 463.0 745 40.4
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 5.7e-128 462.2 747 40.7
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 9.7e-128 461.5 729 41.3
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 1.3e-127 461.1 524 50.4
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 2.4e-126 456.8 707 41.4
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 1.9e-123 447.2 745 38.7
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 3.9e-121 439.5 426 58.0
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 9.1e-118 428.3 625 44.8
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 4.5e-117 426.0 903 33.6
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 1.7e-111 407.5 687 39.2
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 4.1e-110 402.9 515 45.8
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 4.0e-105 386.3 736 36.0
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 6.3e-103 379.0 530 43.0
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.4e-102 377.9 202 91.6
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.3e-100 371.3 284 69.0
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 7.2e-99 365.5 453 48.1
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 2.6e-96 357.1 453 48.3
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.1e-91 341.7 234 73.1
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.5e-91 341.3 210 84.3
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 4.0e-81 306.6 307 53.1
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 5.1e-76 289.7 472 38.6
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.7e-74 283.1 472 37.7
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 2.9e-71 273.9 623 33.9
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 3.2e-70 270.4 465 37.8
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 7.1e-70 269.2 714 30.4
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 3.0e-68 263.8 199 67.8
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 6.6e-68 262.7 250 56.8
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 1.6e-66 258.1 553 33.6
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 6.8e-65 252.7 208 63.5
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 1.2e-56 225.3 189 63.5
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.1e-49 202.2 175 58.9
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 5.4e-46 189.9 139 70.5
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 3.0e-44 184.1 242 48.8
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 1.5e-40 171.8 195 42.6
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 1.7e-31 141.7 155 49.7
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 2.5e-30 137.9 192 43.2
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 4.2e-30 137.1 205 38.5
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 4.2e-30 137.1 311 33.8
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 7.2e-30 136.3 235 37.9
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 2.3e-28 131.3 201 40.3
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 2.3e-28 131.3 201 40.3
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.3e-26 125.6 100 65.0
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 3.6e-21 107.5 127 44.9
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 3.9e-20 104.0 80 61.2
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 2.0e-19 101.7 140 42.1
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 2.2e-18 98.2 59 76.3
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 2.2e-15 88.2 107 46.7
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 3.8e-15 87.4 134 41.0
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 1.8e-12 78.6 49 75.5
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 7.4e-11 73.2 48 70.8
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 7.4e-11 73.2 115 37.4
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 7.4e-11 73.2 61 57.4
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.1e-09 69.3 116 39.7
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.1e-09 69.3 116 39.7
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 1.8e-09 68.6 76 50.0
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 1.6e-08 65.5 168 29.2
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.6e-08 65.5 82 35.4
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 4.5e-08 63.9 159 29.6
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 4.5e-08 63.9 137 33.6
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.3e-07 62.4 133 33.8
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 1.7e-07 62.0 49 65.3
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 2.2e-07 61.6 158 29.1
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 2.9e-07 61.2 159 30.8
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 2.9e-07 61.2 61 49.2
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 8.5e-07 59.7 177 26.6
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 1.5e-06 58.9 134 31.3
SMO173G0064 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.5e-06 58.9 112 39.3
SMO173G0067 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.5e-06 58.9 112 39.3
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 2.5e-06 58.2 122 33.6
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.5e-06 58.2 156 29.5
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 2.5e-06 58.2 122 31.1
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 4.2e-06 57.4 156 29.5
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 5.5e-06 57.0 156 29.5
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 5.5e-06 57.0 153 29.4
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 7.2e-06 56.6 135 31.9
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 9.4e-06 56.2 122 33.6


User provided reference genes

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